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All interfaces > All interologs > Interface groups > group88 > 4Y4O_1s_1a vs 6S0X_s_a

Interface analysis


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Licorice
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RNA

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Licorice
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Common contacts -

4Y4O_1s
4Y4O_1a
6S0X_s
6S0X_a
Conserved?
1s:82 [GLY] 1a:956 [U] s:82 [GLY] a:965 [U] ✔
1s:79 [THR] 1a:956 [U] s:79 [THR] a:965 [U] ✔
1s:79 [THR] 1a:957 [U] s:79 [THR] a:966 [U] ✔
1s:80 [TYR] 1a:956 [U] s:80 [PHE] a:965 [U] ✔
1s:80 [TYR] 1a:1225 [A] s:80 [PHE] a:1235 [A] ✔
1s:80 [TYR] 1a:1226 [C] s:80 [PHE] a:1236 [C] ✔
1s:53 [ASN] 1a:958 [A] s:55 [ARG] a:967 [A] ✔
1s:53 [ASN] 1a:1220 [G] s:55 [ARG] a:1230 [G] ✔
1s:3 [ARG] 1a:1316 [G] s:4 [SER] a:1326 [G] ✔
1s:3 [ARG] 1a:1317 [C] s:4 [SER] a:1327 [C] ✔
1s:3 [ARG] 1a:1318 [A] s:4 [SER] a:1328 [A] ✔
1s:3 [ARG] 1a:1319 [A] s:4 [SER] a:1329 [A] ✔
1s:7 [LYS] 1a:1318 [A] s:10 [PHE] a:1328 [A] ✔
1s:4 [SER] 1a:1315 [U] s:5 [ILE] a:1325 [U] ✔
1s:4 [SER] 1a:1316 [G] s:5 [ILE] a:1326 [G] ✔
1s:5 [LEU] 1a:1312 [G] s:6 [LYS] a:1322 [G] ✔
1s:5 [LEU] 1a:1313 [U] s:6 [LYS] a:1323 [U] ✔
1s:5 [LEU] 1a:1314 [C] s:6 [LYS] a:1324 [C] ✔
1s:52 [TYR] 1a:986 [A] s:54 [GLY] a:995 [A] ✔
1s:52 [TYR] 1a:1220 [G] s:54 [GLY] a:1230 [G] ✔
1s:83 [HIS] 1a:955 [U] s:83 [HIS] a:964 [U] ✔
1s:83 [HIS] 1a:956 [U] s:83 [HIS] a:965 [U] ✔
1s:83 [HIS] 1a:1226 [C] s:83 [HIS] a:1236 [C] ✔
1s:83 [HIS] 1a:1227 [A] s:83 [HIS] a:1237 [A] ✔
1s:70 [LYS] 1a:1320 [C] s:73 [GLU] a:1330 [C] ✔
1s:79 [THR] 1a:958 [A] s:79 [THR] a:967 [A] ❌ 6S0X_s_a
1s:79 [THR] 1a:959 [A] s:79 [THR] a:968 [A] ❌ 6S0X_s_a
1s:79 [THR] 1a:960 [U] s:79 [THR] a:969 [U] ❌ 6S0X_s_a
1s:80 [TYR] 1a:1227 [A] s:80 [PHE] a:1237 [A] ❌ 6S0X_s_a
1s:53 [ASN] 1a:1221 [G] s:55 [ARG] a:1231 [G] ❌ 6S0X_s_a
1s:3 [ARG] 1a:1313 [U] s:4 [SER] a:1323 [U] ❌ 6S0X_s_a
1s:3 [ARG] 1a:1314 [C] s:4 [SER] a:1324 [C] ❌ 6S0X_s_a
1s:3 [ARG] 1a:1315 [U] s:4 [SER] a:1325 [U] ❌ 6S0X_s_a
1s:7 [LYS] 1a:1316 [G] s:10 [PHE] a:1326 [G] ❌ 6S0X_s_a
1s:7 [LYS] 1a:1317 [C] s:10 [PHE] a:1327 [C] ❌ 6S0X_s_a
1s:81 [ARG] 1a:957 [U] s:81 [LYS] a:966 [U] ❌ 6S0X_s_a
1s:4 [SER] 1a:1313 [U] s:5 [ILE] a:1323 [U] ❌ 6S0X_s_a
1s:4 [SER] 1a:1314 [C] s:5 [ILE] a:1324 [C] ❌ 6S0X_s_a
1s:52 [TYR] 1a:987 [G] s:54 [GLY] a:996 [A] ❌ 6S0X_s_a
1s:70 [LYS] 1a:1318 [A] s:73 [GLU] a:1328 [A] ❌ 6S0X_s_a
1s:70 [LYS] 1a:1319 [A] s:73 [GLU] a:1329 [A] ❌ 6S0X_s_a
1s:7 [LYS] 1a:1319 [A] s:10 [PHE] a:1329 [A] ❌ 4Y4O_1s_1a
1s:4 [SER] 1a:1318 [A] s:5 [ILE] a:1328 [A] ❌ 4Y4O_1s_1a
1s:52 [TYR] 1a:985 [C] s:54 [GLY] a:994 [C] ❌ 4Y4O_1s_1a
1s:52 [TYR] 1a:1221 [G] s:54 [GLY] a:1231 [G] ❌ 4Y4O_1s_1a
1s:52 [TYR] 1a:958 [A] s:54 [GLY] a:967 [A] ❌ 4Y4O_1s_1a
1s:53 [ASN] 1a:986 [A] s:55 [ARG] a:995 [A] ❌ 4Y4O_1s_1a
1s:53 [ASN] 1a:957 [U] s:55 [ARG] a:966 [U] ❌ 4Y4O_1s_1a
1s:5 [LEU] 1a:1316 [G] s:6 [LYS] a:1326 [G] ❌ 4Y4O_1s_1a
1s:80 [TYR] 1a:960 [U] s:80 [PHE] a:969 [U] ❌ 4Y4O_1s_1a
1s:81 [ARG] 1a:956 [U] s:81 [LYS] a:965 [U] ❌ 4Y4O_1s_1a
1s:82 [GLY] 1a:955 [U] s:82 [GLY] a:964 [U] ❌ 4Y4O_1s_1a
1s:6 [LYS] 1a:1271 [G] s:8 [GLY] a:1281 [G] ❌ 6S0X_s:8, 6S0X_a:1281 no longer at interface
1s:6 [LYS] 1a:1272 [G] s:8 [GLY] a:1282 [U] ❌ 6S0X_s:8, 6S0X_a:1282 no longer at interface
1s:83 [HIS] 1a:954 [G] s:83 [HIS] a:963 [G] ❌ 6S0X_a:963 no longer at interface
1s:11 [VAL] 1a:1013 [G] s:14 [HIS] a:1022 [G] ❌ 4Y4O_1s:11, 4Y4O_1a:1013 no longer at interface
1s:16 [LEU] 1a:1013 [G] s:18 [LYS] a:1022 [G] ❌ 4Y4O_1s:16, 4Y4O_1a:1013 no longer at interface
1s:20 [LEU] 1a:1012 [U] s:21 [ALA] a:1021 [A] ❌ 4Y4O_1s:20, 4Y4O_1a:1012 no longer at interface
1s:20 [LEU] 1a:1013 [G] s:21 [ALA] a:1022 [G] ❌ 4Y4O_1s:20, 4Y4O_1a:1013 no longer at interface
1s:21 [GLU] 1a:1013 [G] s:22 [GLN] a:1022 [G] ❌ 4Y4O_1s:21, 4Y4O_1a:1013 no longer at interface
1s:33 [THR] 1a:1013 [G] s:32 [LYS] a:1022 [G] ❌ 4Y4O_1s:33, 4Y4O_1a:1013 no longer at interface
1s:3 [ARG] 1a:978 [A] s:4 [SER] a:987 [A] ❌ 4Y4O_1a:978 no longer at interface
1s:6 [LYS] 1a:1313 [U] s:8 [GLY] a:1323 [U] ❌ 6S0X_s:8 no longer at interface
1s:6 [LYS] 1a:1314 [C] s:8 [GLY] a:1324 [C] ❌ 6S0X_s:8 no longer at interface
1s:6 [LYS] 1a:1315 [U] s:8 [GLY] a:1325 [U] ❌ 6S0X_s:8 no longer at interface
1s:73 [GLU] 1a:1320 [C] s:75 [ALA] a:1330 [C] ❌ 6S0X_s:75 no longer at interface
1s:10 [PHE] 1a:1317 [C] s:13 [GLU] a:1327 [C] ❌ 6S0X_s:13 no longer at interface
1s:10 [PHE] 1a:1318 [A] s:13 [GLU] a:1328 [A] ❌ 6S0X_s:13 no longer at interface
1s:10 [PHE] 1a:1319 [A] s:13 [GLU] a:1329 [A] ❌ 6S0X_s:13 no longer at interface
1s:9 [VAL] 1a:1318 [A] s:12 [ASP] a:1328 [A] ❌ 4Y4O_1s:9 no longer at interface
1s:11 [VAL] 1a:1015 [A] s:14 [HIS] a:1024 [G] ❌ 4Y4O_1s:11 no longer at interface
1s:16 [LEU] 1a:1014 [A] s:18 [LYS] a:1023 [A] ❌ 4Y4O_1s:16 no longer at interface
1s:31 [ILE] 1a:1014 [A] s:31 [ILE] a:1023 [A] ❌ 4Y4O_1s:31 no longer at interface
1s:33 [THR] 1a:1014 [A] s:32 [LYS] a:1023 [A] ❌ 4Y4O_1s:33 no longer at interface
1s:33 [THR] 1a:987 [G] s:32 [LYS] a:996 [A] ❌ 4Y4O_1s:33 no longer at interface
1s:35 [SER] 1a:1014 [A] s:33 [THR] a:1023 [A] ❌ 4Y4O_1s:35 no longer at interface
1s:38 [SER] 1a:1014 [A] s:34 [TRP] a:1023 [A] ❌ 4Y4O_1s:38 no longer at interface
1s:38 [SER] 1a:1015 [A] s:34 [TRP] a:1024 [G] ❌ 4Y4O_1s:38 no longer at interface
1s:38 [SER] 1a:1220 [G] s:34 [TRP] a:1230 [G] ❌ 4Y4O_1s:38 no longer at interface
1s:40 [ILE] 1a:1221 [G] s:36 [ARG] a:1231 [G] ❌ 4Y4O_1s:40 no longer at interface
1s:40 [ILE] 1a:1320 [C] s:36 [ARG] a:1330 [C] ❌ 4Y4O_1s:40 no longer at interface
1s:40 [ILE] 1a:1220 [G] s:36 [ARG] a:1230 [G] ❌ 4Y4O_1s:40 no longer at interface
1s:40 [ILE] 1a:1321 [C] s:36 [ARG] a:1331 [U] ❌ 4Y4O_1s:40 no longer at interface
1s:50 [ALA] 1a:1220 [G] s:52 [TYR] a:1230 [G] ❌ 4Y4O_1s:50 no longer at interface
1s:50 [ALA] 1a:987 [G] s:52 [TYR] a:996 [A] ❌ 4Y4O_1s:50 no longer at interface
1s:50 [ALA] 1a:986 [A] s:52 [TYR] a:995 [A] ❌ 4Y4O_1s:50 no longer at interface
1s:50 [ALA] 1a:1014 [A] s:52 [TYR] a:1023 [A] ❌ 4Y4O_1s:50 no longer at interface
1s:50 [ALA] 1a:1221 [G] s:52 [TYR] a:1231 [G] ❌ 4Y4O_1s:50 no longer at interface
1s:51 [VAL] 1a:959 [A] s:53 [ASP] a:968 [A] ❌ 4Y4O_1s:51 no longer at interface
1s:51 [VAL] 1a:1221 [G] s:53 [ASP] a:1231 [G] ❌ 4Y4O_1s:51 no longer at interface
1s:51 [VAL] 1a:958 [A] s:53 [ASP] a:967 [A] ❌ 4Y4O_1s:51 no longer at interface
1s:51 [VAL] 1a:1220 [G] s:53 [ASP] a:1230 [G] ❌ 4Y4O_1s:51 no longer at interface
1s:58 [VAL] 1a:986 [A] s:56 [LYS] a:995 [A] ❌ 4Y4O_1s:58 no longer at interface
1s:58 [VAL] 1a:987 [G] s:56 [LYS] a:996 [A] ❌ 4Y4O_1s:58 no longer at interface
1s:67 [VAL] 1a:1319 [A] s:70 [LYS] a:1329 [A] ❌ 4Y4O_1s:67 no longer at interface
1s:67 [VAL] 1a:1320 [C] s:70 [LYS] a:1330 [C] ❌ 4Y4O_1s:67 no longer at interface
1s:69 [HIS] 1a:1321 [C] s:72 [GLY] a:1331 [U] ❌ 4Y4O_1s:69 no longer at interface
1s:69 [HIS] 1a:1320 [C] s:72 [GLY] a:1330 [C] ❌ 4Y4O_1s:69 no longer at interface
1s:75 [ALA] 1a:959 [A] s:77 [THR] a:968 [A] ❌ 4Y4O_1s:75 no longer at interface
1s:75 [ALA] 1a:1221 [G] s:77 [THR] a:1231 [G] ❌ 4Y4O_1s:75 no longer at interface
1s:75 [ALA] 1a:958 [A] s:77 [THR] a:967 [A] ❌ 4Y4O_1s:75 no longer at interface
1s:75 [ALA] 1a:1222 [G] s:77 [THR] a:1232 [G] ❌ 4Y4O_1s:75 no longer at interface
1s:76 [PRO] 1a:959 [A] s:78 [ARG] a:968 [A] ❌ 4Y4O_1s:76 no longer at interface
1s:76 [PRO] 1a:956 [U] s:78 [ARG] a:965 [U] ❌ 4Y4O_1s:76 no longer at interface
1s:76 [PRO] 1a:960 [U] s:78 [ARG] a:969 [U] ❌ 4Y4O_1s:76 no longer at interface
1s:76 [PRO] 1a:957 [U] s:78 [ARG] a:966 [U] ❌ 4Y4O_1s:76 no longer at interface
1s:76 [PRO] 1a:958 [A] s:78 [ARG] a:967 [A] ❌ 4Y4O_1s:76 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S19 Bacterial small subunit ribosomal RNA 0.94 6.37 0.11 0.75 0.95 0.43 0.87 0.33 0.30 0.09 0.67


Other pairs involving 4Y4O_1s_1a or 6S0X_s_a

Total number of entries: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1s_1a 6S0X_s_a 0.33 0.94 6.37 0.11 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
4Y4O_1s_1a 7K00_S_A 0.97 0.98 0.75 0.81 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
6S0X_s_a 7K00_S_A 0.32 0.94 5.84 0.17 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
4Y4O_1s_1a 7O7Y_Ao_A2 0.62 0.93 2.94 0.43 Ribosomal protein S19 compare
6S0X_s_a 7O7Y_Ao_A2 0.21 0.89 4.66 0.06 Ribosomal protein S19 compare
6S0X_s_a 7RYG_s_a 0.50 0.96 5.57 0.35 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare