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All interfaces > All interologs > Interface groups > group88 > 6S0X_s_a

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_s
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
s:4 [SER] a:987 [A] 3.71 84.59
s:4 [SER] a:1326 [G] 3.01 84.59
s:4 [SER] a:1327 [C] 3.25 84.59
s:4 [SER] a:1328 [A] 3.23 84.59
s:4 [SER] a:1329 [A] 2.25 a:1371 [G] 84.59
s:5 [ILE] a:1325 [U] 3.32 33.28
s:5 [ILE] a:1326 [G] 3.35 33.28
s:5 [ILE] a:1328 [A] 4.62 33.28
s:6 [LYS] a:1322 [G] 3.36 16.05
s:6 [LYS] a:1323 [U] 3.26 a:1334 [A] 16.05
s:6 [LYS] a:1324 [C] 4.62 a:1333 [G] 16.05
s:6 [LYS] a:1326 [G] 4.47 16.05
s:7 [LYS] a:1325 [U] 3.99 91.15
s:10 [PHE] a:1328 [A] 3.52 58.94
s:10 [PHE] a:1329 [A] 3.27 a:1371 [G] 58.94
s:12 [ASP] a:1328 [A] 4.68 52.52
s:14 [HIS] a:1022 [G] 4.02 a:1025 [A] 45.03
s:14 [HIS] a:1024 [G] 3.42 45.03
s:17 [LYS] a:1021 [A] 4.5 a:1026 [U] 54.9
s:18 [LYS] a:1022 [G] 4.35 a:1025 [A] 57.69
s:18 [LYS] a:1023 [A] 3.12 57.69
s:21 [ALA] a:1021 [A] 4.65 a:1026 [U] 35.44
s:21 [ALA] a:1022 [G] 4.93 a:1025 [A] 35.44
s:22 [GLN] a:1022 [G] 4.38 a:1025 [A] 0.0
s:31 [ILE] a:1023 [A] 3.36 68.73
s:32 [LYS] a:996 [A] 3.09 a:1228 [U] sugar:SC, sugar:SC 64.12
s:32 [LYS] a:1022 [G] 4.32 a:1025 [A] 64.12
s:32 [LYS] a:1023 [A] 2.86 64.12
s:33 [THR] a:1023 [A] 3.84 82.79
s:34 [TRP] a:1023 [A] 3.16 47.94
s:34 [TRP] a:1024 [G] 3.62 47.94
s:34 [TRP] a:1229 [U] 4.64 a:995 [A] 47.94
s:34 [TRP] a:1230 [G] 3.05 a:994 [C] 47.94
s:36 [ARG] a:1230 [G] 3.26 a:994 [C] 98.31
s:36 [ARG] a:1231 [G] 3.4 a:993 [C] 98.31
s:36 [ARG] a:1330 [C] 3.04 base:SC 98.31
s:36 [ARG] a:1331 [U] 3.68 base:SC 98.31
s:37 [ARG] a:1230 [G] 3.08 a:994 [C] 71.05
s:37 [ARG] a:1327 [C] 4.09 71.05
s:37 [ARG] a:1328 [A] 2.72 base:SC 71.05
s:37 [ARG] a:1330 [C] 4.05 71.05
s:52 [TYR] a:995 [A] 2.38 a:1229 [U] base:SC, sugar:SC 82.03
s:52 [TYR] a:996 [A] 4.37 a:1228 [U] 82.03
s:52 [TYR] a:1023 [A] 3.74 82.03
s:52 [TYR] a:1230 [G] 2.41 a:994 [C] sugar:BB 82.03
s:52 [TYR] a:1231 [G] 4.52 a:993 [C] 82.03
s:53 [ASP] a:967 [A] 3.12 91.98
s:53 [ASP] a:968 [A] 4.85 91.98
s:53 [ASP] a:1230 [G] 3.82 a:994 [C] 91.98
s:53 [ASP] a:1231 [G] 3.21 a:993 [C] 91.98
s:54 [GLY] a:967 [A] 3.08 99.0
s:54 [GLY] a:994 [C] 4.57 a:1230 [G] 99.0
s:54 [GLY] a:995 [A] 3.27 a:1229 [U] 99.0
s:54 [GLY] a:1230 [G] 2.93 a:994 [C] base:BB 99.0
s:54 [GLY] a:1231 [G] 4.27 a:993 [C] 99.0
s:55 [ARG] a:966 [U] 3.71 81.49
s:55 [ARG] a:967 [A] 2.87 base:SC base/AA stacks 81.49
s:55 [ARG] a:995 [A] 2.34 a:1229 [U] sugar:BB 81.49
s:55 [ARG] a:1230 [G] 4.66 a:994 [C] 81.49
s:56 [LYS] a:995 [A] 4.16 a:1229 [U] 9.86
s:56 [LYS] a:996 [A] 3.14 a:1228 [U] 9.86
s:69 [HIS] a:1330 [C] 3.37 sugar:SC 76.4
s:70 [LYS] a:1329 [A] 4.03 a:1371 [G] 85.64
s:70 [LYS] a:1330 [C] 2.52 85.64
s:72 [GLY] a:1330 [C] 2.97 93.14
s:72 [GLY] a:1331 [U] 5.0 93.14
s:73 [GLU] a:1330 [C] 3.44 90.57
s:77 [THR] a:967 [A] 2.34 base:BB 95.1
s:77 [THR] a:968 [A] 3.37 base:SC 95.1
s:77 [THR] a:1231 [G] 3.27 a:993 [C] 95.1
s:77 [THR] a:1232 [G] 3.91 95.1
s:78 [ARG] a:965 [U] 5.0 a:969 [U] 87.48
s:78 [ARG] a:966 [U] 3.17 sugar:BB 87.48
s:78 [ARG] a:967 [A] 4.38 87.48
s:78 [ARG] a:968 [A] 3.44 87.48
s:78 [ARG] a:969 [U] 3.25 a:965 [U] 87.48
s:79 [THR] a:965 [U] 3.37 a:969 [U] sugar:BB 71.92
s:79 [THR] a:966 [U] 3.36 71.92
s:80 [PHE] a:965 [U] 2.79 a:969 [U] sugar:BB 16.27
s:80 [PHE] a:969 [U] 4.22 a:965 [U] 16.27
s:80 [PHE] a:1235 [A] 4.64 a:964 [U] 16.27
s:80 [PHE] a:1236 [C] 4.26 a:963 [G] 16.27
s:81 [LYS] a:965 [U] 4.26 a:969 [U] 39.23
s:82 [GLY] a:964 [U] 3.61 a:1235 [A] 3.37
s:82 [GLY] a:965 [U] 3.72 a:969 [U] 3.37
s:83 [HIS] a:964 [U] 2.75 a:1235 [A] sugar:SC 78.25
s:83 [HIS] a:965 [U] 4.91 a:969 [U] 78.25
s:83 [HIS] a:1236 [C] 4.02 a:963 [G] 78.25
s:83 [HIS] a:1237 [A] 3.47 78.25

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group88 6S0X_s_a s: 30s ribosomal protein s19, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) A0A133PYC3 Ribosomal protein S19 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1s_1a 6S0X_s_a 0.33 0.94 6.37 0.11 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
6S0X_s_a 7O7Y_Ao_A2 0.21 0.89 4.66 0.06 Ribosomal protein S19 compare
6S0X_s_a 7RYG_s_a 0.50 0.96 5.57 0.35 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
6S0X_s_a 7K00_S_A 0.32 0.94 5.84 0.17 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare