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All interfaces > All interologs > Interface groups > group88 > 7K00_S_A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_S
7K00_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
S:2 [PRO] A:1312 [G] 3.54 A:1325 [C] 49.86
S:2 [PRO] A:1313 [U] 3.05 A:1324 [A] base:BB 49.86
S:2 [PRO] A:1314 [C] 2.79 A:1323 [G] base:BB 49.86
S:2 [PRO] A:1319 [A] 4.96 A:1315 [U] 49.86
S:2 [PRO] A:1320 [C] 4.95 49.86
S:2 [PRO] A:1323 [G] 3.8 A:1314 [C] base:BB 49.86
S:2 [PRO] A:1324 [A] 4.31 A:1313 [U] 49.86
S:3 [ARG] A:1313 [U] 4.38 A:1324 [A] 92.55
S:3 [ARG] A:1314 [C] 4.48 A:1323 [G] 92.55
S:3 [ARG] A:1316 [G] 3.63 92.55
S:3 [ARG] A:1317 [C] 4.79 A:979 [C] 92.55
S:3 [ARG] A:1318 [A] 2.61 92.55
S:3 [ARG] A:1319 [A] 3.07 A:1315 [U] 92.55
S:4 [SER] A:1313 [U] 3.61 A:1324 [A] 78.36
S:4 [SER] A:1314 [C] 2.22 A:1323 [G] 78.36
S:4 [SER] A:1316 [G] 4.96 78.36
S:5 [LEU] A:1312 [G] 3.65 A:1325 [C] 37.19
S:5 [LEU] A:1313 [U] 2.84 A:1324 [A] 37.19
S:6 [LYS] A:1271 [A] 4.19 A:1264 [U] 37.38
S:6 [LYS] A:1313 [U] 4.63 A:1324 [A] 37.38
S:6 [LYS] A:1314 [C] 2.43 A:1323 [G] 37.38
S:6 [LYS] A:1315 [U] 4.97 A:1319 [A] 37.38
S:7 [LYS] A:1315 [U] 4.94 A:1319 [A] 91.07
S:7 [LYS] A:1316 [G] 2.9 base:SC, base:SC 91.07
S:7 [LYS] A:1318 [A] 3.15 91.07
S:10 [PHE] A:1317 [C] 4.44 A:979 [C] 46.81
S:10 [PHE] A:1318 [A] 3.37 46.81
S:10 [PHE] A:1319 [A] 3.8 A:1315 [U] 46.81
S:14 [HIS] A:1014 [A] 3.51 38.04
S:14 [HIS] A:1015 [G] 3.6 38.04
S:17 [LYS] A:1012 [A] 3.27 A:1017 [U] 53.89
S:17 [LYS] A:1013 [G] 4.84 A:1016 [A] 53.89
S:18 [LYS] A:1013 [G] 4.42 A:1016 [A] 46.82
S:18 [LYS] A:1014 [A] 3.18 46.82
S:21 [LYS] A:1012 [A] 4.63 A:1017 [U] 29.13
S:32 [ARG] A:987 [G] 4.47 A:1218 [C] 66.74
S:32 [ARG] A:1014 [A] 4.57 66.74
S:34 [TRP] A:1014 [A] 3.4 base/AA stacks 47.13
S:34 [TRP] A:1219 [A] 3.53 A:986 [U] 47.13
S:34 [TRP] A:1220 [G] 3.2 A:985 [C] 47.13
S:36 [ARG] A:1220 [G] 3.14 A:985 [C] 98.57
S:36 [ARG] A:1221 [G] 3.13 A:984 [C] 98.57
S:36 [ARG] A:1320 [C] 2.46 base:SC, base:SC 98.57
S:36 [ARG] A:1321 [U] 3.33 98.57
S:37 [ARG] A:1220 [G] 4.42 A:985 [C] 62.65
S:37 [ARG] A:1317 [C] 2.66 A:979 [C] base:SC, base:SC 62.65
S:37 [ARG] A:1318 [A] 3.42 62.65
S:37 [ARG] A:1319 [A] 4.98 A:1315 [U] 62.65
S:37 [ARG] A:1320 [C] 3.81 62.65
S:52 [HIS] A:986 [U] 4.13 A:1219 [A] 76.49
S:52 [HIS] A:1220 [G] 2.87 A:985 [C] 76.49
S:53 [ASN] A:958 [A] 2.98 base:BB 91.84
S:53 [ASN] A:1220 [G] 4.31 A:985 [C] 91.84
S:53 [ASN] A:1221 [G] 3.64 A:984 [C] sugar:BB 91.84
S:54 [GLY] A:958 [A] 3.05 99.0
S:54 [GLY] A:985 [C] 4.58 A:1220 [G] 99.0
S:54 [GLY] A:986 [U] 3.4 A:1219 [A] 99.0
S:54 [GLY] A:1220 [G] 2.84 A:985 [C] base:BB 99.0
S:54 [GLY] A:1221 [G] 3.26 A:984 [C] 99.0
S:55 [ARG] A:957 [U] 4.27 A:959 [A] 72.4
S:55 [ARG] A:958 [A] 2.94 base/AA stacks 72.4
S:55 [ARG] A:986 [U] 3.32 A:1219 [A] sugar:BB 72.4
S:55 [ARG] A:1220 [G] 4.99 A:985 [C] 72.4
S:70 [LYS] A:1318 [A] 4.14 80.26
S:70 [LYS] A:1319 [A] 3.03 A:1315 [U] 80.26
S:70 [LYS] A:1320 [C] 3.07 80.26
S:72 [GLY] A:1320 [C] 3.25 90.27
S:73 [GLU] A:1320 [C] 3.5 92.44
S:77 [THR] A:958 [A] 3.02 base:BB 97.97
S:77 [THR] A:959 [A] 2.73 A:957 [U] base:BB 97.97
S:77 [THR] A:1221 [G] 3.1 A:984 [C] 97.97
S:77 [THR] A:1222 [G] 2.61 A:983 [A] 97.97
S:77 [THR] A:1321 [U] 3.22 sugar:SC 97.97
S:78 [ARG] A:959 [A] 3.95 A:957 [U] 85.53
S:78 [ARG] A:960 [U] 4.13 A:956 [U] 85.53
S:78 [ARG] A:1222 [G] 3.47 A:983 [A] 85.53
S:78 [ARG] A:1223 [C] 2.91 85.53
S:78 [ARG] A:1224 [U] 3.15 85.53
S:78 [ARG] A:1225 [A] 3.17 A:955 [U] 85.53
S:78 [ARG] A:1321 [U] 2.91 sugar:SC 85.53
S:78 [ARG] A:1322 [C] 2.75 85.53
S:79 [THR] A:956 [U] 3.97 A:960 [U] sugar:BB 70.24
S:79 [THR] A:957 [U] 3.29 A:959 [A] 70.24
S:79 [THR] A:958 [A] 4.21 70.24
S:79 [THR] A:959 [A] 4.87 A:957 [U] 70.24
S:79 [THR] A:960 [U] 4.25 A:956 [U] 70.24
S:80 [TYR] A:956 [U] 3.71 A:960 [U] 26.37
S:80 [TYR] A:1225 [A] 4.69 A:955 [U] 26.37
S:80 [TYR] A:1226 [C] 3.42 A:954 [G] 26.37
S:80 [TYR] A:1227 [A] 2.93 26.37
S:81 [ARG] A:957 [U] 3.56 A:959 [A] 32.77
S:81 [ARG] A:958 [A] 4.77 32.77
S:82 [GLY] A:956 [U] 4.41 A:960 [U] 3.28
S:83 [HIS] A:954 [G] 4.26 A:1226 [C] 82.02
S:83 [HIS] A:955 [U] 2.91 A:1225 [A] base:SC 82.02
S:83 [HIS] A:956 [U] 3.58 A:960 [U] 82.02
S:83 [HIS] A:1225 [A] 4.75 A:955 [U] 82.02
S:83 [HIS] A:1226 [C] 2.96 A:954 [G] 82.02
S:83 [HIS] A:1227 [A] 3.46 base/AA stacks 82.02
S:84 [ALA] A:955 [U] 4.83 A:1225 [A] 47.41
S:84 [ALA] A:1227 [A] 3.58 47.41

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group88 7K00_S_A S: 30s ribosomal protein s19, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) P0A7U3 Ribosomal protein S19 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1s_1a 7K00_S_A 0.97 0.98 0.75 0.81 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
6S0X_s_a 7K00_S_A 0.32 0.94 5.84 0.17 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
7K00_S_A 7O7Y_Ao_A2 0.55 0.92 2.87 0.27 Ribosomal protein S19 compare