Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 1G59_A
|
1G59_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:43 [THR] | B:576 [A] | 4.92 | 98.33 | |||
| A:44 [ASP] | B:575 [C] | 3.08 | 98.78 | |||
| A:44 [ASP] | B:576 [A] | 2.61 | 98.78 | |||
| A:45 [ARG] | B:576 [A] | 2.95 | 54.26 | |||
| A:46 [ALA] | B:575 [C] | 3.27 | 57.54 | |||
| A:46 [ALA] | B:576 [A] | 2.9 | 57.54 | |||
| A:47 [ARG] | B:573 [A] | 2.9 | base:SC | 98.89 | ||
| A:47 [ARG] | B:575 [C] | 2.9 | base/AA stacks | 98.89 | ||
| A:47 [ARG] | B:576 [A] | 4.55 | 98.89 | |||
| A:106 [PHE] | B:574 [C] | 4.74 | 73.74 | |||
| A:107 [GLU] | B:574 [C] | 2.96 | base:BB | 70.19 | ||
| A:108 [THR] | B:574 [C] | 3.98 | 80.83 | |||
| A:109 [PRO] | B:574 [C] | 3.61 | 35.25 | |||
| A:109 [PRO] | B:576 [A] | 3.56 | 35.25 | |||
| A:112 [LEU] | B:574 [C] | 3.51 | 84.44 | |||
| A:116 [ARG] | B:573 [A] | 3.34 | 89.41 | |||
| A:121 [GLY] | B:573 [A] | 4.7 | 56.49 | |||
| A:145 [VAL] | B:574 [C] | 3.47 | 80.27 | |||
| A:147 [ARG] | B:574 [C] | 3.34 | 96.25 | |||
| A:163 [ARG] | B:505 [C] | 2.89 | B:568 [G] | sugar:SC | 77.27 | |
| A:163 [ARG] | B:506 [C] | 3.17 | B:567 [G] | 77.27 | ||
| A:166 [VAL] | B:504 [C] | 3.28 | B:569 [G] | 80.62 | ||
| A:166 [VAL] | B:505 [C] | 3.58 | B:568 [G] | 80.62 | ||
| A:168 [TYR] | B:503 [C] | 4.43 | B:570 [G] | 52.52 | ||
| A:168 [TYR] | B:504 [C] | 4.23 | B:569 [G] | 52.52 | ||
| A:172 [GLU] | B:503 [C] | 2.85 | B:570 [G] | sugar:SC | 36.58 | |
| A:172 [GLU] | B:504 [C] | 4.72 | B:569 [G] | 36.58 | ||
| A:176 [VAL] | B:574 [C] | 4.51 | 63.21 | |||
| A:177 [VAL] | B:573 [A] | 4.93 | 85.21 | |||
| A:177 [VAL] | B:574 [C] | 2.69 | 85.21 | |||
| A:180 [LYS] | B:574 [C] | 3.3 | 92.37 | |||
| A:180 [LYS] | B:575 [C] | 3.44 | 92.37 | |||
| A:180 [LYS] | B:576 [A] | 3.23 | 92.37 | |||
| A:181 [SER] | B:574 [C] | 2.68 | base:BB, base:SC, base:SC | 88.42 | ||
| A:181 [SER] | B:576 [A] | 2.76 | 88.42 | |||
| A:182 [ASP] | B:574 [C] | 4.59 | 88.98 | |||
| A:182 [ASP] | B:576 [A] | 2.66 | 88.98 | |||
| A:186 [THR] | B:575 [C] | 4.38 | 89.04 | |||
| A:207 [GLU] | B:505 [C] | 3.22 | B:568 [G] | 78.44 | ||
| A:207 [GLU] | B:569 [G] | 4.41 | B:504 [C] | 78.44 | ||
| A:208 [GLU] | B:570 [G] | 3.85 | B:503 [C] | sugar:BB | 91.16 | |
| A:208 [GLU] | B:571 [U] | 3.52 | B:502 [G] | 91.16 | ||
| A:210 [LEU] | B:504 [C] | 4.86 | B:569 [G] | 79.53 | ||
| A:210 [LEU] | B:505 [C] | 4.32 | B:568 [G] | 79.53 | ||
| A:211 [VAL] | B:503 [C] | 4.69 | B:570 [G] | 76.33 | ||
| A:211 [VAL] | B:504 [C] | 4.23 | B:569 [G] | 76.33 | ||
| A:211 [VAL] | B:570 [G] | 3.97 | B:503 [C] | 76.33 | ||
| A:211 [VAL] | B:571 [U] | 3.86 | B:502 [G] | 76.33 | ||
| A:235 [LEU] | B:570 [G] | 3.92 | B:503 [C] | 74.07 | ||
| A:237 [ARG] | B:568 [G] | 4.54 | B:505 [C] | 70.46 | ||
| A:237 [ARG] | B:569 [G] | 3.31 | B:504 [C] | sugar:SC | 70.46 | |
| A:240 [ASP] | B:569 [G] | 4.52 | B:504 [C] | 78.72 | ||
| A:241 [LYS] | B:511 [U] | 3.97 | B:524 [A] | 64.97 | ||
| A:241 [LYS] | B:512 [C] | 3.74 | B:523 [G] | 64.97 | ||
| A:241 [LYS] | B:568 [G] | 4.42 | B:505 [C] | 64.97 | ||
| A:241 [LYS] | B:569 [G] | 3.39 | B:504 [C] | 64.97 | ||
| A:242 [THR] | B:569 [G] | 3.61 | B:504 [C] | 50.97 | ||
| A:242 [THR] | B:570 [G] | 4.31 | B:503 [C] | 50.97 | ||
| A:243 [LYS] | B:569 [G] | 3.9 | B:504 [C] | 88.5 | ||
| A:243 [LYS] | B:570 [G] | 3.35 | B:503 [C] | 88.5 | ||
| A:243 [LYS] | B:571 [U] | 3.36 | B:502 [G] | 88.5 | ||
| A:269 [TYR] | B:512 [C] | 4.86 | B:523 [G] | 71.36 | ||
| A:272 [LEU] | B:512 [C] | 2.91 | B:523 [G] | sugar:BB | 70.64 | |
| A:272 [LEU] | B:513 [U] | 3.9 | B:522 [G] | 70.64 | ||
| A:273 [MET] | B:512 [C] | 3.69 | B:523 [G] | 84.1 | ||
| A:273 [MET] | B:513 [U] | 3.72 | B:522 [G] | 84.1 | ||
| A:274 [GLY] | B:512 [C] | 4.33 | B:523 [G] | 95.07 | ||
| A:274 [GLY] | B:513 [U] | 3.04 | B:522 [G] | 95.07 | ||
| A:274 [GLY] | B:514 [A] | 4.89 | B:508 [U] | 95.07 | ||
| A:276 [SER] | B:513 [U] | 4.23 | B:522 [G] | 84.23 | ||
| A:276 [SER] | B:514 [A] | 3.16 | B:508 [U] | 84.23 | ||
| A:280 [GLY] | B:523 [G] | 4.83 | B:512 [C] | 63.59 | ||
| A:282 [GLU] | B:512 [C] | 4.21 | B:523 [G] | 88.52 | ||
| A:282 [GLU] | B:523 [G] | 3.45 | B:512 [C] | base:SC | 88.52 | |
| A:282 [GLU] | B:524 [A] | 3.06 | B:511 [U] | sugar:SC | 88.52 | |
| A:296 [GLU] | B:516 [C] | 4.85 | 44.74 | |||
| A:297 [ARG] | B:514 [A] | 3.49 | B:508 [U] | 58.47 | ||
| A:297 [ARG] | B:515 [G] | 3.7 | B:548 [C] | 58.47 | ||
| A:299 [SER] | B:513 [U] | 3.27 | B:522 [G] | 60.5 | ||
| A:299 [SER] | B:514 [A] | 4.26 | B:508 [U] | 60.5 | ||
| A:300 [LEU] | B:505 [C] | 4.84 | B:568 [G] | 61.95 | ||
| A:300 [LEU] | B:506 [C] | 3.67 | B:567 [G] | 61.95 | ||
| A:300 [LEU] | B:507 [A] | 4.55 | B:566 [U] | 61.95 | ||
| A:301 [GLY] | B:506 [C] | 4.03 | B:567 [G] | 80.65 | ||
| A:301 [GLY] | B:507 [A] | 4.6 | B:566 [U] | 80.65 | ||
| A:301 [GLY] | B:513 [U] | 4.38 | B:522 [G] | 80.65 | ||
| A:302 [GLY] | B:512 [C] | 3.28 | B:523 [G] | 55.08 | ||
| A:303 [PRO] | B:512 [C] | 3.4 | B:523 [G] | 85.63 | ||
| A:303 [PRO] | B:513 [U] | 3.27 | B:522 [G] | 85.63 | ||
| A:304 [VAL] | B:511 [U] | 3.23 | B:524 [A] | sugar:BB | 59.91 | |
| A:304 [VAL] | B:512 [C] | 2.86 | B:523 [G] | 59.91 | ||
| A:306 [ASP] | B:510 [G] | 4.9 | B:525 [C] | 88.71 | ||
| A:306 [ASP] | B:511 [U] | 4.48 | B:524 [A] | 88.71 | ||
| A:306 [ASP] | B:525 [C] | 4.4 | B:510 [G] | 88.71 | ||
| A:308 [GLU] | B:525 [C] | 4.18 | B:510 [G] | 37.42 | ||
| A:308 [GLU] | B:526 [G] | 4.4 | B:544 [A] | 37.42 | ||
| A:309 [LYS] | B:512 [C] | 3.76 | B:523 [G] | 87.5 | ||
| A:309 [LYS] | B:523 [G] | 4.55 | B:512 [C] | 87.5 | ||
| A:309 [LYS] | B:524 [A] | 3.45 | B:511 [U] | sugar:SC | 87.5 | |
| A:309 [LYS] | B:525 [C] | 3.31 | B:510 [G] | 87.5 | ||
| A:312 [TRP] | B:524 [A] | 3.61 | B:511 [U] | 43.37 | ||
| A:312 [TRP] | B:525 [C] | 3.18 | B:510 [G] | 43.37 | ||
| A:312 [TRP] | B:526 [G] | 4.2 | B:544 [A] | 43.37 | ||
| A:316 [LYS] | B:539 [G] | 4.08 | B:531 [C] | 60.19 | ||
| A:319 [ARG] | B:538 [A] | 3.24 | B:532 [C] | 71.08 | ||
| A:319 [ARG] | B:539 [G] | 3.22 | B:531 [C] | 71.08 | ||
| A:320 [GLU] | B:539 [G] | 3.52 | B:531 [C] | 57.49 | ||
| A:357 [PRO] | B:537 [A] | 2.39 | sugar:BB | 43.07 | ||
| A:357 [PRO] | B:538 [A] | 3.45 | B:532 [C] | 43.07 | ||
| A:358 [ARG] | B:535 [U] | 4.17 | 82.97 | |||
| A:358 [ARG] | B:536 [C] | 2.74 | base:SC, base:SC | 82.97 | ||
| A:358 [ARG] | B:537 [A] | 3.4 | base/AA stacks | 82.97 | ||
| A:417 [ARG] | B:534 [C] | 2.76 | 57.84 | |||
| A:426 [LYS] | B:534 [C] | 3.19 | 75.04 | |||
| A:427 [LEU] | B:534 [C] | 3.13 | 31.7 | |||
| A:428 [GLY] | B:534 [C] | 3.84 | 51.99 | |||
| A:431 [ALA] | B:534 [C] | 3.87 | 59.31 | |||
| A:432 [GLN] | B:534 [C] | 3.98 | 51.54 | |||
| A:432 [GLN] | B:535 [U] | 2.49 | sugar:SC | 51.54 | ||
| A:435 [ARG] | B:534 [C] | 2.81 | base:SC | 98.57 | ||
| A:435 [ARG] | B:535 [U] | 2.83 | sugar:SC | base/AA stacks | 98.57 | |
| A:442 [LEU] | B:535 [U] | 2.72 | sugar:BB | 36.71 | ||
| A:442 [LEU] | B:536 [C] | 4.25 | 36.71 | |||
| A:443 [GLU] | B:535 [U] | 3.75 | 46.55 | |||
| A:443 [GLU] | B:536 [C] | 3.36 | 46.55 | |||
| A:444 [THR] | B:535 [U] | 2.49 | base:BB, base:BB | 86.99 | ||
| A:444 [THR] | B:536 [C] | 3.6 | 86.99 | |||
| A:445 [PRO] | B:535 [U] | 3.43 | 87.31 | |||
| A:445 [PRO] | B:536 [C] | 4.96 | 87.31 | |||
| A:446 [GLY] | B:534 [C] | 3.92 | 56.32 | |||
| A:446 [GLY] | B:535 [U] | 3.55 | 56.32 | |||
| A:447 [LEU] | B:534 [C] | 3.09 | base:BB | 75.5 | ||
| A:447 [LEU] | B:535 [U] | 4.84 | 75.5 | |||
| A:448 [PHE] | B:534 [C] | 3.14 | base/AA stacks | 48.44 | ||
| A:449 [GLU] | B:534 [C] | 3.89 | base:SC | 56.85 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group89 | 1G59_A_B | A: Glutamyl-tRNA synthetase, Thermus thermophilus (genetically engineered) B: tRNA(glu) | P27000 | tRNA | ✘ |
|
Interologs
Total number of interologs for this interface: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1G59_A_B | 4JYZ_A_B | 0.44 | 0.66 | 3.78 | 0.1 | tRNA | compare | |
| 1G59_A_B | 4JXZ_A_B | 0.45 | 0.65 | 3.81 | 0.11 | tRNA | compare | |
| 1G59_A_B | 1ZJW_A_B | 0.43 | 0.65 | 3.86 | 0.1 | tRNA | compare | |
| 1G59_A_B | 1QTQ_A_B | 0.44 | 0.65 | 4.08 | 0.11 | tRNA | compare | |
| 1G59_A_B | 1N78_A_C | 0.95 | 0.99 | 0.35 | 0.9 | tRNA | compare |