RNAprotDB

All interfaces > All interologs > Interface groups > group89 > 1N78_A_C

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1N78_A
1N78_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:9 [SER] C:576 [A] 2.79 96.58
A:41 [GLU] C:576 [A] 3.55 91.51
A:43 [THR] C:576 [A] 3.17 96.69
A:44 [ASP] C:575 [C] 2.7 sugar:SC 98.04
A:44 [ASP] C:576 [A] 3.69 98.04
A:47 [ARG] C:575 [C] 3.31 sugar:SC 97.94
A:47 [ARG] C:576 [A] 4.68 97.94
A:107 [GLU] C:574 [C] 3.0 base:BB 74.0
A:108 [THR] C:574 [C] 4.4 80.24
A:109 [PRO] C:574 [C] 3.9 40.08
A:112 [LEU] C:574 [C] 3.41 85.4
A:116 [ARG] C:573 [A] 3.32 89.09
A:116 [ARG] C:574 [C] 3.86 89.09
A:121 [GLY] C:573 [A] 3.85 61.13
A:145 [VAL] C:574 [C] 3.04 76.71
A:147 [ARG] C:574 [C] 3.83 96.48
A:163 [ARG] C:505 [C] 2.38 C:568 [G] sugar:SC 73.8
A:163 [ARG] C:506 [C] 3.59 C:567 [G] 73.8
A:165 [VAL] C:505 [C] 4.94 C:568 [G] 38.6
A:166 [VAL] C:504 [C] 3.65 C:569 [G] 78.6
A:166 [VAL] C:505 [C] 3.0 C:568 [G] 78.6
A:167 [VAL] C:504 [C] 4.85 C:569 [G] 3.75
A:168 [TYR] C:503 [C] 4.08 C:570 [G] 56.27
A:168 [TYR] C:504 [C] 3.22 C:569 [G] sugar:SC 56.27
A:172 [GLU] C:503 [C] 2.57 C:570 [G] 31.49
A:172 [GLU] C:504 [C] 4.74 C:569 [G] 31.49
A:177 [VAL] C:573 [A] 4.72 84.55
A:177 [VAL] C:574 [C] 3.27 84.55
A:180 [LYS] C:574 [C] 3.29 92.62
A:180 [LYS] C:575 [C] 2.82 92.62
A:180 [LYS] C:576 [A] 2.72 92.62
A:181 [SER] C:574 [C] 2.75 base:BB, base:SC, base:SC 88.48
A:182 [ASP] C:574 [C] 4.61 89.19
A:185 [PRO] C:576 [A] 3.83 91.66
A:186 [THR] C:574 [C] 4.38 88.0
A:186 [THR] C:575 [C] 4.24 88.0
A:186 [THR] C:576 [A] 3.94 88.0
A:187 [TYR] C:576 [A] 3.5 base/AA stacks 90.47
A:188 [HIS] C:576 [A] 4.2 88.5
A:207 [GLU] C:505 [C] 2.47 C:568 [G] sugar:SC 77.19
A:207 [GLU] C:506 [C] 4.64 C:567 [G] 77.19
A:207 [GLU] C:569 [G] 4.75 C:504 [C] 77.19
A:207 [GLU] C:570 [G] 4.04 C:503 [C] 77.19
A:208 [GLU] C:570 [G] 3.28 C:503 [C] sugar:BB 92.06
A:208 [GLU] C:571 [U] 3.36 C:502 [G] 92.06
A:208 [GLU] C:576 [A] 4.7 92.06
A:209 [TRP] C:570 [G] 4.91 C:503 [C] 95.89
A:209 [TRP] C:576 [A] 2.92 base/AA stacks 95.89
A:210 [LEU] C:504 [C] 3.56 C:569 [G] 78.14
A:210 [LEU] C:505 [C] 3.59 C:568 [G] 78.14
A:211 [VAL] C:503 [C] 4.77 C:570 [G] 75.78
A:211 [VAL] C:504 [C] 4.06 C:569 [G] 75.78
A:211 [VAL] C:570 [G] 3.34 C:503 [C] 75.78
A:211 [VAL] C:571 [U] 3.34 C:502 [G] 75.78
A:212 [SER] C:576 [A] 4.66 96.9
A:235 [LEU] C:570 [G] 4.88 C:503 [C] 75.4
A:237 [ARG] C:568 [G] 4.07 C:505 [C] 68.93
A:237 [ARG] C:569 [G] 3.22 C:504 [C] 68.93
A:240 [ASP] C:569 [G] 4.84 C:504 [C] 76.63
A:241 [LYS] C:511 [U] 4.38 C:524 [A] 65.05
A:241 [LYS] C:512 [C] 2.98 C:523 [G] 65.05
A:241 [LYS] C:568 [G] 3.95 C:505 [C] 65.05
A:241 [LYS] C:569 [G] 3.09 C:504 [C] 65.05
A:242 [THR] C:569 [G] 3.55 C:504 [C] 46.29
A:242 [THR] C:570 [G] 4.54 C:503 [C] 46.29
A:243 [LYS] C:569 [G] 3.85 C:504 [C] 87.7
A:243 [LYS] C:570 [G] 3.63 C:503 [C] 87.7
A:243 [LYS] C:571 [U] 3.83 C:502 [G] 87.7
A:272 [LEU] C:512 [C] 2.88 C:523 [G] sugar:BB 69.32
A:272 [LEU] C:513 [U] 3.91 C:522 [G] 69.32
A:273 [MET] C:512 [C] 3.64 C:523 [G] 81.49
A:273 [MET] C:513 [U] 3.73 C:522 [G] 81.49
A:274 [GLY] C:512 [C] 4.28 C:523 [G] 93.6
A:274 [GLY] C:513 [U] 2.77 C:522 [G] 93.6
A:275 [PHE] C:513 [U] 4.94 C:522 [G] 69.83
A:276 [SER] C:513 [U] 4.09 C:522 [G] 81.88
A:276 [SER] C:514 [A] 3.33 C:508 [U] 81.88
A:280 [GLY] C:523 [G] 5.0 C:512 [C] 62.69
A:282 [GLU] C:512 [C] 4.54 C:523 [G] 86.93
A:282 [GLU] C:523 [G] 3.71 C:512 [C] 86.93
A:282 [GLU] C:524 [A] 2.45 C:511 [U] sugar:SC 86.93
A:297 [ARG] C:514 [A] 3.32 C:508 [U] 57.9
A:297 [ARG] C:515 [G] 3.15 C:548 [C] 57.9
A:299 [SER] C:513 [U] 3.56 C:522 [G] 60.85
A:299 [SER] C:514 [A] 4.16 C:508 [U] 60.85
A:300 [LEU] C:506 [C] 3.89 C:567 [G] 62.07
A:301 [GLY] C:506 [C] 3.55 C:567 [G] 82.05
A:301 [GLY] C:507 [A] 4.56 C:566 [U] 82.05
A:301 [GLY] C:513 [U] 4.35 C:522 [G] 82.05
A:302 [GLY] C:506 [C] 4.83 C:567 [G] 50.3
A:302 [GLY] C:512 [C] 3.57 C:523 [G] 50.3
A:303 [PRO] C:512 [C] 3.35 C:523 [G] 83.96
A:303 [PRO] C:513 [U] 3.5 C:522 [G] 83.96
A:304 [VAL] C:511 [U] 3.46 C:524 [A] 60.35
A:304 [VAL] C:512 [C] 2.94 C:523 [G] 60.35
A:306 [ASP] C:510 [G] 4.5 C:525 [C] 86.33
A:306 [ASP] C:511 [U] 3.89 C:524 [A] 86.33
A:306 [ASP] C:525 [C] 4.34 C:510 [G] 86.33
A:308 [GLU] C:525 [C] 3.91 C:510 [G] 38.44
A:308 [GLU] C:526 [G] 4.43 C:544 [A] 38.44
A:309 [LYS] C:512 [C] 4.13 C:523 [G] 87.84
A:309 [LYS] C:523 [G] 4.6 C:512 [C] 87.84
A:309 [LYS] C:524 [A] 2.99 C:511 [U] base:SC, sugar:SC 87.84
A:309 [LYS] C:525 [C] 3.37 C:510 [G] 87.84
A:312 [TRP] C:524 [A] 3.77 C:511 [U] 37.82
A:312 [TRP] C:525 [C] 3.24 C:510 [G] 37.82
A:312 [TRP] C:526 [G] 4.12 C:544 [A] 37.82
A:316 [LYS] C:539 [G] 3.82 C:531 [C] 58.08
A:319 [ARG] C:538 [A] 3.3 C:532 [C] 73.07
A:319 [ARG] C:539 [G] 3.26 C:531 [C] 73.07
A:320 [GLU] C:539 [G] 3.98 C:531 [C] 48.66
A:357 [PRO] C:537 [A] 2.4 sugar:BB 41.04
A:357 [PRO] C:538 [A] 3.37 C:532 [C] 41.04
A:358 [ARG] C:535 [U] 4.03 82.72
A:358 [ARG] C:536 [C] 2.72 base:SC, base:SC 82.72
A:358 [ARG] C:537 [A] 3.54 base/AA stacks 82.72
A:417 [ARG] C:533 [U] 4.87 54.61
A:417 [ARG] C:534 [C] 2.9 54.61
A:427 [LEU] C:534 [C] 3.6 41.35
A:428 [GLY] C:534 [C] 3.87 52.61
A:431 [ALA] C:534 [C] 3.7 63.04
A:432 [GLN] C:534 [C] 4.11 54.1
A:432 [GLN] C:535 [U] 3.08 sugar:SC, sugar:SC 54.1
A:435 [ARG] C:534 [C] 2.31 base:SC 97.27
A:435 [ARG] C:535 [U] 3.16 base/AA stacks 97.27
A:442 [LEU] C:535 [U] 2.42 sugar:BB 32.45
A:442 [LEU] C:536 [C] 4.11 32.45
A:443 [GLU] C:535 [U] 3.57 50.9
A:443 [GLU] C:536 [C] 3.22 50.9
A:444 [THR] C:535 [U] 2.75 base:BB, base:BB 88.61
A:444 [THR] C:536 [C] 3.25 88.61
A:445 [PRO] C:535 [U] 3.39 88.48
A:446 [GLY] C:534 [C] 3.69 53.57
A:446 [GLY] C:535 [U] 3.02 53.57
A:447 [LEU] C:534 [C] 3.2 base:BB 78.75
A:447 [LEU] C:535 [U] 4.78 78.75
A:448 [PHE] C:534 [C] 3.54 base/AA stacks 42.81
A:449 [GLU] C:534 [C] 3.6 base:SC 60.1

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group89 1N78_A_C A: Glutamyl-tRNA synthetase, Thermus thermophilus (genetically engineered) C: tRNA(glu) P27000 tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1G59_A_B 1N78_A_C 0.95 0.99 0.35 0.9 tRNA compare
1N78_A_C 1QTQ_A_B 0.55 0.65 3.78 0.13 tRNA compare
1N78_A_C 4JYZ_A_B 0.52 0.66 3.55 0.12 tRNA compare
1N78_A_C 4JXZ_A_B 0.53 0.65 3.61 0.13 tRNA compare
1N78_A_C 1ZJW_A_B 0.54 0.65 3.61 0.12 tRNA compare