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All interfaces > All interologs > Interface groups > group89 > 1ZJW_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1ZJW_A
1ZJW_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:8 [THR] B:914 [A] 4.64 B:908 [U] 39.36
A:8 [THR] B:915 [G] 4.9 B:948 [C] 39.36
A:9 [ASN] B:914 [A] 4.42 B:908 [U] 75.39
A:10 [PHE] B:914 [A] 4.96 B:908 [U] 73.85
A:13 [GLN] B:915 [G] 3.83 B:948 [C] 18.74
A:13 [GLN] B:916 [C] 3.24 base:SC 18.74
A:34 [GLU] B:975 [C] 4.58 93.17
A:34 [GLU] B:976 [A] 3.04 93.17
A:66 [ASP] B:976 [A] 3.55 93.79
A:68 [THR] B:975 [C] 4.94 98.89
A:68 [THR] B:976 [A] 2.51 98.89
A:69 [ASN] B:975 [C] 3.21 sugar:SC 98.89
A:69 [ASN] B:976 [A] 3.71 98.89
A:72 [LYS] B:975 [C] 4.15 59.01
A:124 [LEU] B:974 [C] 2.98 base:BB 82.43
A:125 [THR] B:974 [C] 3.79 50.71
A:126 [PRO] B:974 [C] 3.62 2.21
A:129 [ILE] B:974 [C] 3.63 73.15
A:130 [ARG] B:972 [A] 3.98 60.63
A:130 [ARG] B:973 [G] 3.03 60.63
A:133 [ARG] B:972 [A] 2.9 sugar:SC 95.06
A:133 [ARG] B:973 [G] 3.1 95.06
A:133 [ARG] B:974 [C] 2.78 95.06
A:134 [GLY] B:972 [A] 3.8 sugar:BB 62.08
A:135 [THR] B:972 [A] 3.6 25.95
A:136 [LEU] B:902 [G] 2.94 B:971 [C] 41.63
A:136 [LEU] B:971 [C] 3.67 B:902 [G] 41.63
A:136 [LEU] B:972 [A] 3.76 41.63
A:137 [THR] B:902 [G] 3.66 B:971 [C] 53.05
A:168 [GLY] B:974 [C] 2.59 base:BB 86.52
A:169 [LYS] B:974 [C] 4.45 40.96
A:170 [ALA] B:974 [C] 4.12 63.98
A:171 [CYS] B:974 [C] 3.94 72.32
A:181 [PRO] B:902 [G] 3.03 B:971 [C] base:BB 37.54
A:181 [PRO] B:903 [G] 3.55 B:970 [C] 37.54
A:182 [PHE] B:903 [G] 3.48 B:970 [C] 95.84
A:182 [PHE] B:904 [G] 3.46 B:969 [C] 95.84
A:183 [ILE] B:902 [G] 4.46 B:971 [C] 69.22
A:183 [ILE] B:971 [C] 3.85 B:902 [G] 69.22
A:183 [ILE] B:972 [A] 3.23 69.22
A:184 [VAL] B:971 [C] 4.99 B:902 [G] 72.86
A:189 [VAL] B:974 [C] 3.72 79.34
A:192 [ARG] B:974 [C] 3.44 98.95
A:192 [ARG] B:975 [C] 2.59 98.95
A:192 [ARG] B:976 [A] 2.88 98.95
A:193 [ILE] B:974 [C] 4.41 87.23
A:194 [LYS] B:974 [C] 4.25 44.24
A:194 [LYS] B:975 [C] 2.86 44.24
A:209 [PRO] B:976 [A] 4.18 98.84
A:210 [MET] B:973 [G] 4.57 79.51
A:210 [MET] B:974 [C] 3.52 79.51
A:210 [MET] B:975 [C] 3.68 79.51
A:210 [MET] B:976 [A] 3.76 79.51
A:211 [TYR] B:976 [A] 2.9 base/AA stacks 97.43
A:212 [ASP] B:976 [A] 4.95 96.43
A:231 [LEU] B:905 [G] 4.44 B:968 [C] 68.24
A:232 [GLU] B:970 [C] 3.9 B:903 [G] sugar:BB 97.89
A:232 [GLU] B:976 [A] 4.68 97.89
A:233 [PHE] B:976 [A] 3.35 base/AA stacks 89.06
A:234 [GLN] B:904 [G] 3.67 B:969 [C] 55.25
A:234 [GLN] B:905 [G] 3.43 B:968 [C] sugar:SC 55.25
A:235 [ASP] B:903 [G] 3.04 B:970 [C] base:SC 60.66
A:235 [ASP] B:904 [G] 3.46 B:969 [C] 60.66
A:235 [ASP] B:970 [C] 3.8 B:903 [G] 60.66
A:235 [ASP] B:971 [C] 4.09 B:902 [G] 60.66
A:236 [ASN] B:976 [A] 3.83 base:SC 92.65
A:237 [ARG] B:904 [G] 4.8 B:969 [C] 73.63
A:237 [ARG] B:905 [G] 3.62 B:968 [C] 73.63
A:238 [ARG] B:904 [G] 3.0 B:969 [C] 59.05
A:238 [ARG] B:905 [G] 3.45 B:968 [C] 59.05
A:259 [SER] B:913 [A] 4.65 B:922 [A] 86.03
A:312 [ARG] B:912 [C] 4.36 B:923 [G] 2.0
A:312 [ARG] B:923 [G] 4.86 B:912 [C] 2.0
A:312 [ARG] B:924 [G] 3.67 B:911 [C] 2.0
A:312 [ARG] B:925 [C] 3.75 B:910 [G] 2.0
A:313 [ILE] B:912 [C] 2.89 B:923 [G] sugar:BB 58.01
A:313 [ILE] B:913 [A] 3.23 B:922 [A] 58.01
A:314 [GLY] B:912 [C] 4.75 B:923 [G] 91.01
A:314 [GLY] B:913 [A] 4.28 B:922 [A] 91.01
A:315 [VAL] B:914 [A] 4.04 B:908 [U] 61.73
A:316 [THR] B:913 [A] 2.57 B:922 [A] 83.78
A:316 [THR] B:914 [A] 3.83 B:908 [U] 83.78
A:317 [LYS] B:905 [G] 3.98 B:968 [C] 68.87
A:317 [LYS] B:906 [U] 3.51 B:967 [A] 68.87
A:318 [GLN] B:906 [U] 3.54 B:967 [A] 54.52
A:318 [GLN] B:907 [A] 2.67 B:966 [U] 54.52
A:318 [GLN] B:908 [U] 3.02 B:914 [A] 54.52
A:318 [GLN] B:913 [A] 4.09 B:922 [A] 54.52
A:319 [ASP] B:905 [G] 4.46 B:968 [C] 53.38
A:319 [ASP] B:906 [U] 4.81 B:967 [A] 53.38
A:319 [ASP] B:912 [C] 4.16 B:923 [G] 53.38
A:319 [ASP] B:969 [C] 3.38 B:904 [G] 53.38
A:320 [ASN] B:912 [C] 3.38 B:923 [G] 65.91
A:320 [ASN] B:913 [A] 4.06 B:922 [A] 65.91
A:321 [THR] B:911 [C] 3.07 B:924 [G] sugar:BB 9.48
A:321 [THR] B:912 [C] 3.04 B:923 [G] 9.48
A:322 [ILE] B:911 [C] 3.79 B:924 [G] 63.37
A:322 [ILE] B:912 [C] 4.16 B:923 [G] 63.37
A:323 [GLU] B:910 [G] 2.75 B:925 [C] base:SC 62.2
A:323 [GLU] B:911 [C] 3.16 B:924 [G] base/AA stacks 62.2
A:323 [GLU] B:925 [C] 4.24 B:910 [G] 62.2
A:323 [GLU] B:926 [A] 4.64 B:944 [C] 62.2
A:325 [ALA] B:925 [C] 3.77 B:910 [G] 47.53
A:325 [ALA] B:926 [A] 3.91 B:944 [C] 47.53
A:326 [SER] B:925 [C] 3.43 B:910 [G] 42.13
A:329 [SER] B:925 [C] 3.63 B:910 [G] 65.47
A:329 [SER] B:926 [A] 4.45 B:944 [C] 65.47
A:332 [ARG] B:926 [A] 4.74 B:944 [C] 90.57
A:336 [ASN] B:937 [A] 4.68 B:933 [U] 83.91
A:336 [ASN] B:938 [U] 3.13 B:932 [U] sugar:SC 83.91
A:336 [ASN] B:939 [U] 4.8 B:931 [A] 83.91
A:341 [ARG] B:935 [U] 2.3 base:SC 94.73
A:368 [HIS] B:935 [U] 4.41 75.5
A:369 [PRO] B:935 [U] 3.49 80.84
A:370 [ASN] B:935 [U] 4.39 39.59
A:370 [ASN] B:937 [A] 3.36 B:933 [U] base:SC 39.59
A:370 [ASN] B:938 [U] 3.01 B:932 [U] base:SC 39.59
A:370 [ASN] B:939 [U] 4.99 B:931 [A] 39.59
A:399 [GLN] B:936 [G] 2.9 base:BB 39.39
A:400 [TYR] B:936 [G] 4.01 64.03
A:401 [LYS] B:935 [U] 4.76 42.74
A:401 [LYS] B:936 [G] 2.47 42.74
A:402 [ARG] B:936 [G] 3.03 base:SC 64.24
A:410 [ARG] B:934 [C] 3.86 base/AA stacks 87.95
A:411 [LEU] B:934 [C] 4.37 94.46
A:412 [ARG] B:934 [C] 2.91 base:SC, sugar:SC 67.8
A:412 [ARG] B:935 [U] 3.04 67.8
A:413 [ASN] B:934 [C] 3.17 base:BB, base:BB 57.32
A:414 [ALA] B:934 [C] 4.13 62.18
A:442 [LEU] B:934 [C] 4.41 3.67
A:455 [VAL] B:934 [C] 2.82 71.77
A:455 [VAL] B:935 [U] 4.12 71.77
A:455 [VAL] B:936 [G] 3.81 71.77
A:517 [GLN] B:935 [U] 2.93 base:SC 98.84
A:517 [GLN] B:937 [A] 4.83 B:933 [U] 98.84
A:519 [GLU] B:935 [U] 3.23 base/AA stacks 73.05
A:520 [ARG] B:935 [U] 2.79 base:BB 98.84
A:520 [ARG] B:936 [G] 3.01 98.84
A:523 [TYR] B:937 [A] 4.86 B:933 [U] 76.79
A:544 [LEU] B:935 [U] 4.0 93.76
A:544 [LEU] B:937 [A] 3.78 B:933 [U] 93.76
A:545 [ARG] B:926 [A] 4.67 B:944 [C] 74.29
A:545 [ARG] B:927 [C] 2.81 B:943 [G] 74.29
A:545 [ARG] B:928 [C] 4.8 B:942 [G] 74.29
A:545 [ARG] B:937 [A] 2.94 B:933 [U] 74.29
A:545 [ARG] B:938 [U] 3.52 B:932 [U] 74.29
A:546 [ASP] B:936 [G] 4.79 60.35
A:547 [THR] B:936 [G] 4.95 62.43
A:547 [THR] B:937 [A] 2.94 B:933 [U] 62.43
A:996 [GLN] B:976 [A] 3.14 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group89 1ZJW_A_B A: Glutaminyl-tRNA synthetase, Escherichia coli (genetically engineered) B: Glutaminyl-tRNA P00962 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1G59_A_B 1ZJW_A_B 0.43 0.65 3.86 0.1 tRNA compare
1N78_A_C 1ZJW_A_B 0.54 0.65 3.61 0.12 tRNA compare
1QTQ_A_B 1ZJW_A_B 0.98 1.0 0.27 0.96 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare
1ZJW_A_B 4JXZ_A_B 0.98 0.99 0.35 0.94 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare
1ZJW_A_B 4JYZ_A_B 0.98 0.99 0.42 0.85 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare