Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 1ZJW_A
|
1ZJW_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:8 [THR] | B:914 [A] | 4.64 | B:908 [U] | 39.36 | ||
| A:8 [THR] | B:915 [G] | 4.9 | B:948 [C] | 39.36 | ||
| A:9 [ASN] | B:914 [A] | 4.42 | B:908 [U] | 75.39 | ||
| A:10 [PHE] | B:914 [A] | 4.96 | B:908 [U] | 73.85 | ||
| A:13 [GLN] | B:915 [G] | 3.83 | B:948 [C] | 18.74 | ||
| A:13 [GLN] | B:916 [C] | 3.24 | base:SC | 18.74 | ||
| A:34 [GLU] | B:975 [C] | 4.58 | 93.17 | |||
| A:34 [GLU] | B:976 [A] | 3.04 | 93.17 | |||
| A:66 [ASP] | B:976 [A] | 3.55 | 93.79 | |||
| A:68 [THR] | B:975 [C] | 4.94 | 98.89 | |||
| A:68 [THR] | B:976 [A] | 2.51 | 98.89 | |||
| A:69 [ASN] | B:975 [C] | 3.21 | sugar:SC | 98.89 | ||
| A:69 [ASN] | B:976 [A] | 3.71 | 98.89 | |||
| A:72 [LYS] | B:975 [C] | 4.15 | 59.01 | |||
| A:124 [LEU] | B:974 [C] | 2.98 | base:BB | 82.43 | ||
| A:125 [THR] | B:974 [C] | 3.79 | 50.71 | |||
| A:126 [PRO] | B:974 [C] | 3.62 | 2.21 | |||
| A:129 [ILE] | B:974 [C] | 3.63 | 73.15 | |||
| A:130 [ARG] | B:972 [A] | 3.98 | 60.63 | |||
| A:130 [ARG] | B:973 [G] | 3.03 | 60.63 | |||
| A:133 [ARG] | B:972 [A] | 2.9 | sugar:SC | 95.06 | ||
| A:133 [ARG] | B:973 [G] | 3.1 | 95.06 | |||
| A:133 [ARG] | B:974 [C] | 2.78 | 95.06 | |||
| A:134 [GLY] | B:972 [A] | 3.8 | sugar:BB | 62.08 | ||
| A:135 [THR] | B:972 [A] | 3.6 | 25.95 | |||
| A:136 [LEU] | B:902 [G] | 2.94 | B:971 [C] | 41.63 | ||
| A:136 [LEU] | B:971 [C] | 3.67 | B:902 [G] | 41.63 | ||
| A:136 [LEU] | B:972 [A] | 3.76 | 41.63 | |||
| A:137 [THR] | B:902 [G] | 3.66 | B:971 [C] | 53.05 | ||
| A:168 [GLY] | B:974 [C] | 2.59 | base:BB | 86.52 | ||
| A:169 [LYS] | B:974 [C] | 4.45 | 40.96 | |||
| A:170 [ALA] | B:974 [C] | 4.12 | 63.98 | |||
| A:171 [CYS] | B:974 [C] | 3.94 | 72.32 | |||
| A:181 [PRO] | B:902 [G] | 3.03 | B:971 [C] | base:BB | 37.54 | |
| A:181 [PRO] | B:903 [G] | 3.55 | B:970 [C] | 37.54 | ||
| A:182 [PHE] | B:903 [G] | 3.48 | B:970 [C] | 95.84 | ||
| A:182 [PHE] | B:904 [G] | 3.46 | B:969 [C] | 95.84 | ||
| A:183 [ILE] | B:902 [G] | 4.46 | B:971 [C] | 69.22 | ||
| A:183 [ILE] | B:971 [C] | 3.85 | B:902 [G] | 69.22 | ||
| A:183 [ILE] | B:972 [A] | 3.23 | 69.22 | |||
| A:184 [VAL] | B:971 [C] | 4.99 | B:902 [G] | 72.86 | ||
| A:189 [VAL] | B:974 [C] | 3.72 | 79.34 | |||
| A:192 [ARG] | B:974 [C] | 3.44 | 98.95 | |||
| A:192 [ARG] | B:975 [C] | 2.59 | 98.95 | |||
| A:192 [ARG] | B:976 [A] | 2.88 | 98.95 | |||
| A:193 [ILE] | B:974 [C] | 4.41 | 87.23 | |||
| A:194 [LYS] | B:974 [C] | 4.25 | 44.24 | |||
| A:194 [LYS] | B:975 [C] | 2.86 | 44.24 | |||
| A:209 [PRO] | B:976 [A] | 4.18 | 98.84 | |||
| A:210 [MET] | B:973 [G] | 4.57 | 79.51 | |||
| A:210 [MET] | B:974 [C] | 3.52 | 79.51 | |||
| A:210 [MET] | B:975 [C] | 3.68 | 79.51 | |||
| A:210 [MET] | B:976 [A] | 3.76 | 79.51 | |||
| A:211 [TYR] | B:976 [A] | 2.9 | base/AA stacks | 97.43 | ||
| A:212 [ASP] | B:976 [A] | 4.95 | 96.43 | |||
| A:231 [LEU] | B:905 [G] | 4.44 | B:968 [C] | 68.24 | ||
| A:232 [GLU] | B:970 [C] | 3.9 | B:903 [G] | sugar:BB | 97.89 | |
| A:232 [GLU] | B:976 [A] | 4.68 | 97.89 | |||
| A:233 [PHE] | B:976 [A] | 3.35 | base/AA stacks | 89.06 | ||
| A:234 [GLN] | B:904 [G] | 3.67 | B:969 [C] | 55.25 | ||
| A:234 [GLN] | B:905 [G] | 3.43 | B:968 [C] | sugar:SC | 55.25 | |
| A:235 [ASP] | B:903 [G] | 3.04 | B:970 [C] | base:SC | 60.66 | |
| A:235 [ASP] | B:904 [G] | 3.46 | B:969 [C] | 60.66 | ||
| A:235 [ASP] | B:970 [C] | 3.8 | B:903 [G] | 60.66 | ||
| A:235 [ASP] | B:971 [C] | 4.09 | B:902 [G] | 60.66 | ||
| A:236 [ASN] | B:976 [A] | 3.83 | base:SC | 92.65 | ||
| A:237 [ARG] | B:904 [G] | 4.8 | B:969 [C] | 73.63 | ||
| A:237 [ARG] | B:905 [G] | 3.62 | B:968 [C] | 73.63 | ||
| A:238 [ARG] | B:904 [G] | 3.0 | B:969 [C] | 59.05 | ||
| A:238 [ARG] | B:905 [G] | 3.45 | B:968 [C] | 59.05 | ||
| A:259 [SER] | B:913 [A] | 4.65 | B:922 [A] | 86.03 | ||
| A:312 [ARG] | B:912 [C] | 4.36 | B:923 [G] | 2.0 | ||
| A:312 [ARG] | B:923 [G] | 4.86 | B:912 [C] | 2.0 | ||
| A:312 [ARG] | B:924 [G] | 3.67 | B:911 [C] | 2.0 | ||
| A:312 [ARG] | B:925 [C] | 3.75 | B:910 [G] | 2.0 | ||
| A:313 [ILE] | B:912 [C] | 2.89 | B:923 [G] | sugar:BB | 58.01 | |
| A:313 [ILE] | B:913 [A] | 3.23 | B:922 [A] | 58.01 | ||
| A:314 [GLY] | B:912 [C] | 4.75 | B:923 [G] | 91.01 | ||
| A:314 [GLY] | B:913 [A] | 4.28 | B:922 [A] | 91.01 | ||
| A:315 [VAL] | B:914 [A] | 4.04 | B:908 [U] | 61.73 | ||
| A:316 [THR] | B:913 [A] | 2.57 | B:922 [A] | 83.78 | ||
| A:316 [THR] | B:914 [A] | 3.83 | B:908 [U] | 83.78 | ||
| A:317 [LYS] | B:905 [G] | 3.98 | B:968 [C] | 68.87 | ||
| A:317 [LYS] | B:906 [U] | 3.51 | B:967 [A] | 68.87 | ||
| A:318 [GLN] | B:906 [U] | 3.54 | B:967 [A] | 54.52 | ||
| A:318 [GLN] | B:907 [A] | 2.67 | B:966 [U] | 54.52 | ||
| A:318 [GLN] | B:908 [U] | 3.02 | B:914 [A] | 54.52 | ||
| A:318 [GLN] | B:913 [A] | 4.09 | B:922 [A] | 54.52 | ||
| A:319 [ASP] | B:905 [G] | 4.46 | B:968 [C] | 53.38 | ||
| A:319 [ASP] | B:906 [U] | 4.81 | B:967 [A] | 53.38 | ||
| A:319 [ASP] | B:912 [C] | 4.16 | B:923 [G] | 53.38 | ||
| A:319 [ASP] | B:969 [C] | 3.38 | B:904 [G] | 53.38 | ||
| A:320 [ASN] | B:912 [C] | 3.38 | B:923 [G] | 65.91 | ||
| A:320 [ASN] | B:913 [A] | 4.06 | B:922 [A] | 65.91 | ||
| A:321 [THR] | B:911 [C] | 3.07 | B:924 [G] | sugar:BB | 9.48 | |
| A:321 [THR] | B:912 [C] | 3.04 | B:923 [G] | 9.48 | ||
| A:322 [ILE] | B:911 [C] | 3.79 | B:924 [G] | 63.37 | ||
| A:322 [ILE] | B:912 [C] | 4.16 | B:923 [G] | 63.37 | ||
| A:323 [GLU] | B:910 [G] | 2.75 | B:925 [C] | base:SC | 62.2 | |
| A:323 [GLU] | B:911 [C] | 3.16 | B:924 [G] | base/AA stacks | 62.2 | |
| A:323 [GLU] | B:925 [C] | 4.24 | B:910 [G] | 62.2 | ||
| A:323 [GLU] | B:926 [A] | 4.64 | B:944 [C] | 62.2 | ||
| A:325 [ALA] | B:925 [C] | 3.77 | B:910 [G] | 47.53 | ||
| A:325 [ALA] | B:926 [A] | 3.91 | B:944 [C] | 47.53 | ||
| A:326 [SER] | B:925 [C] | 3.43 | B:910 [G] | 42.13 | ||
| A:329 [SER] | B:925 [C] | 3.63 | B:910 [G] | 65.47 | ||
| A:329 [SER] | B:926 [A] | 4.45 | B:944 [C] | 65.47 | ||
| A:332 [ARG] | B:926 [A] | 4.74 | B:944 [C] | 90.57 | ||
| A:336 [ASN] | B:937 [A] | 4.68 | B:933 [U] | 83.91 | ||
| A:336 [ASN] | B:938 [U] | 3.13 | B:932 [U] | sugar:SC | 83.91 | |
| A:336 [ASN] | B:939 [U] | 4.8 | B:931 [A] | 83.91 | ||
| A:341 [ARG] | B:935 [U] | 2.3 | base:SC | 94.73 | ||
| A:368 [HIS] | B:935 [U] | 4.41 | 75.5 | |||
| A:369 [PRO] | B:935 [U] | 3.49 | 80.84 | |||
| A:370 [ASN] | B:935 [U] | 4.39 | 39.59 | |||
| A:370 [ASN] | B:937 [A] | 3.36 | B:933 [U] | base:SC | 39.59 | |
| A:370 [ASN] | B:938 [U] | 3.01 | B:932 [U] | base:SC | 39.59 | |
| A:370 [ASN] | B:939 [U] | 4.99 | B:931 [A] | 39.59 | ||
| A:399 [GLN] | B:936 [G] | 2.9 | base:BB | 39.39 | ||
| A:400 [TYR] | B:936 [G] | 4.01 | 64.03 | |||
| A:401 [LYS] | B:935 [U] | 4.76 | 42.74 | |||
| A:401 [LYS] | B:936 [G] | 2.47 | 42.74 | |||
| A:402 [ARG] | B:936 [G] | 3.03 | base:SC | 64.24 | ||
| A:410 [ARG] | B:934 [C] | 3.86 | base/AA stacks | 87.95 | ||
| A:411 [LEU] | B:934 [C] | 4.37 | 94.46 | |||
| A:412 [ARG] | B:934 [C] | 2.91 | base:SC, sugar:SC | 67.8 | ||
| A:412 [ARG] | B:935 [U] | 3.04 | 67.8 | |||
| A:413 [ASN] | B:934 [C] | 3.17 | base:BB, base:BB | 57.32 | ||
| A:414 [ALA] | B:934 [C] | 4.13 | 62.18 | |||
| A:442 [LEU] | B:934 [C] | 4.41 | 3.67 | |||
| A:455 [VAL] | B:934 [C] | 2.82 | 71.77 | |||
| A:455 [VAL] | B:935 [U] | 4.12 | 71.77 | |||
| A:455 [VAL] | B:936 [G] | 3.81 | 71.77 | |||
| A:517 [GLN] | B:935 [U] | 2.93 | base:SC | 98.84 | ||
| A:517 [GLN] | B:937 [A] | 4.83 | B:933 [U] | 98.84 | ||
| A:519 [GLU] | B:935 [U] | 3.23 | base/AA stacks | 73.05 | ||
| A:520 [ARG] | B:935 [U] | 2.79 | base:BB | 98.84 | ||
| A:520 [ARG] | B:936 [G] | 3.01 | 98.84 | |||
| A:523 [TYR] | B:937 [A] | 4.86 | B:933 [U] | 76.79 | ||
| A:544 [LEU] | B:935 [U] | 4.0 | 93.76 | |||
| A:544 [LEU] | B:937 [A] | 3.78 | B:933 [U] | 93.76 | ||
| A:545 [ARG] | B:926 [A] | 4.67 | B:944 [C] | 74.29 | ||
| A:545 [ARG] | B:927 [C] | 2.81 | B:943 [G] | 74.29 | ||
| A:545 [ARG] | B:928 [C] | 4.8 | B:942 [G] | 74.29 | ||
| A:545 [ARG] | B:937 [A] | 2.94 | B:933 [U] | 74.29 | ||
| A:545 [ARG] | B:938 [U] | 3.52 | B:932 [U] | 74.29 | ||
| A:546 [ASP] | B:936 [G] | 4.79 | 60.35 | |||
| A:547 [THR] | B:936 [G] | 4.95 | 62.43 | |||
| A:547 [THR] | B:937 [A] | 2.94 | B:933 [U] | 62.43 | ||
| A:996 [GLN] | B:976 [A] | 3.14 | 0.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group89 | 1ZJW_A_B | A: Glutaminyl-tRNA synthetase, Escherichia coli (genetically engineered) B: Glutaminyl-tRNA | P00962 | HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase | tRNA | ✘ |
|
Interologs
Total number of interologs for this interface: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1G59_A_B | 1ZJW_A_B | 0.43 | 0.65 | 3.86 | 0.1 | tRNA | compare | |
| 1N78_A_C | 1ZJW_A_B | 0.54 | 0.65 | 3.61 | 0.12 | tRNA | compare | |
| 1ZJW_A_B | 4JXZ_A_B | 0.98 | 0.99 | 0.35 | 0.94 | HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase | tRNA | compare |
| 1ZJW_A_B | 4JYZ_A_B | 0.98 | 0.99 | 0.42 | 0.85 | HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase | tRNA | compare |
| 1QTQ_A_B | 1ZJW_A_B | 0.98 | 1.0 | 0.27 | 0.96 | HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase | tRNA | compare |