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All interfaces > All interologs > Interface groups > group89 > 4JXZ_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4JXZ_A
4JXZ_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:8 [THR] B:914 [A] 4.22 B:908 [U] 41.55
A:8 [THR] B:915 [G] 4.81 B:948 [C] 41.55
A:9 [ASN] B:914 [A] 4.29 B:908 [U] 75.21
A:10 [PHE] B:914 [A] 4.9 B:908 [U] 75.68
A:13 [GLN] B:915 [G] 3.39 B:948 [C] 21.41
A:13 [GLN] B:916 [C] 2.82 base:SC 21.41
A:34 [GLU] B:975 [C] 4.51 93.62
A:34 [GLU] B:976 [A] 3.22 93.62
A:66 [ASP] B:976 [A] 3.97 94.07
A:68 [THR] B:975 [C] 4.76 98.69
A:68 [THR] B:976 [A] 2.48 98.69
A:69 [ASN] B:975 [C] 3.0 sugar:SC 98.77
A:69 [ASN] B:976 [A] 3.57 98.77
A:72 [LYS] B:975 [C] 3.62 66.93
A:124 [LEU] B:974 [C] 2.9 base:BB 79.22
A:125 [THR] B:974 [C] 3.74 52.17
A:126 [PRO] B:974 [C] 3.59 1.54
A:129 [ILE] B:974 [C] 3.81 73.77
A:130 [ARG] B:972 [A] 4.32 58.24
A:130 [ARG] B:973 [G] 2.98 58.24
A:130 [ARG] B:974 [C] 4.42 58.24
A:133 [ARG] B:972 [A] 3.23 95.7
A:133 [ARG] B:973 [G] 2.88 95.7
A:133 [ARG] B:974 [C] 2.9 95.7
A:134 [GLY] B:972 [A] 3.83 49.88
A:135 [THR] B:972 [A] 3.71 21.38
A:136 [LEU] B:902 [G] 2.99 B:971 [C] 46.3
A:136 [LEU] B:971 [C] 3.66 B:902 [G] 46.3
A:136 [LEU] B:972 [A] 3.69 46.3
A:137 [THR] B:902 [G] 4.1 B:971 [C] 52.78
A:168 [GLY] B:974 [C] 3.08 base:BB, base:BB 83.46
A:169 [LYS] B:974 [C] 4.8 37.71
A:170 [ALA] B:974 [C] 4.16 62.38
A:171 [CYS] B:974 [C] 4.03 71.68
A:181 [PRO] B:902 [G] 3.26 B:971 [C] base:BB 33.24
A:181 [PRO] B:903 [G] 3.52 B:970 [C] 33.24
A:182 [PHE] B:903 [G] 3.33 B:970 [C] 95.41
A:182 [PHE] B:904 [G] 3.56 B:969 [C] 95.41
A:183 [ILE] B:902 [G] 4.09 B:971 [C] 68.77
A:183 [ILE] B:971 [C] 3.62 B:902 [G] 68.77
A:183 [ILE] B:972 [A] 3.31 68.77
A:184 [VAL] B:971 [C] 4.8 B:902 [G] 69.55
A:189 [VAL] B:974 [C] 3.72 78.63
A:192 [ARG] B:974 [C] 3.65 98.86
A:192 [ARG] B:975 [C] 2.84 98.86
A:192 [ARG] B:976 [A] 2.76 98.86
A:193 [ILE] B:974 [C] 4.4 80.4
A:194 [LYS] B:974 [C] 4.78 40.37
A:194 [LYS] B:975 [C] 3.08 40.37
A:209 [PRO] B:976 [A] 4.2 98.8
A:210 [MET] B:973 [G] 4.18 77.38
A:210 [MET] B:974 [C] 3.55 77.38
A:210 [MET] B:975 [C] 3.71 77.38
A:210 [MET] B:976 [A] 3.87 77.38
A:211 [TYR] B:976 [A] 2.98 base/AA stacks 95.73
A:212 [ASP] B:976 [A] 4.59 96.07
A:231 [LEU] B:905 [G] 4.1 B:968 [C] 68.79
A:232 [GLU] B:970 [C] 3.9 B:903 [G] sugar:BB 98.72
A:232 [GLU] B:976 [A] 4.26 98.72
A:233 [PHE] B:976 [A] 3.39 base/AA stacks 88.07
A:234 [GLN] B:904 [G] 3.59 B:969 [C] 53.19
A:234 [GLN] B:905 [G] 3.34 B:968 [C] sugar:SC 53.19
A:235 [ASP] B:903 [G] 3.13 B:970 [C] base:SC 62.45
A:235 [ASP] B:904 [G] 3.44 B:969 [C] 62.45
A:235 [ASP] B:970 [C] 4.26 B:903 [G] 62.45
A:235 [ASP] B:971 [C] 3.71 B:902 [G] 62.45
A:236 [ASN] B:976 [A] 3.44 base:SC 91.17
A:237 [ARG] B:904 [G] 4.65 B:969 [C] 71.35
A:237 [ARG] B:905 [G] 3.41 B:968 [C] 71.35
A:238 [ARG] B:904 [G] 2.99 B:969 [C] 62.16
A:238 [ARG] B:905 [G] 3.41 B:968 [C] 62.16
A:259 [SER] B:913 [A] 4.69 B:922 [A] 86.19
A:264 [GLU] B:911 [C] 4.86 B:924 [G] 62.34
A:312 [ARG] B:912 [C] 4.33 B:923 [G] 6.69
A:312 [ARG] B:923 [G] 4.92 B:912 [C] 6.69
A:312 [ARG] B:924 [G] 3.86 B:911 [C] 6.69
A:312 [ARG] B:925 [C] 3.96 B:910 [G] 6.69
A:313 [ILE] B:912 [C] 2.82 B:923 [G] sugar:BB 57.92
A:313 [ILE] B:913 [A] 3.2 B:922 [A] 57.92
A:314 [GLY] B:912 [C] 4.68 B:923 [G] 92.28
A:314 [GLY] B:913 [A] 4.24 B:922 [A] 92.28
A:315 [VAL] B:913 [A] 4.87 B:922 [A] 58.9
A:315 [VAL] B:914 [A] 4.1 B:908 [U] 58.9
A:316 [THR] B:912 [C] 4.99 B:923 [G] 82.92
A:316 [THR] B:913 [A] 2.57 B:922 [A] 82.92
A:316 [THR] B:914 [A] 3.75 B:908 [U] 82.92
A:317 [LYS] B:905 [G] 3.8 B:968 [C] 63.45
A:317 [LYS] B:906 [U] 3.43 B:967 [A] 63.45
A:318 [GLN] B:906 [U] 2.94 B:967 [A] 52.34
A:318 [GLN] B:907 [A] 3.11 B:966 [U] 52.34
A:318 [GLN] B:913 [A] 4.08 B:922 [A] 52.34
A:318 [GLN] B:914 [A] 4.84 B:908 [U] 52.34
A:319 [ASP] B:905 [G] 4.73 B:968 [C] 56.0
A:319 [ASP] B:906 [U] 4.68 B:967 [A] 56.0
A:319 [ASP] B:912 [C] 4.23 B:923 [G] 56.0
A:319 [ASP] B:969 [C] 3.25 B:904 [G] 56.0
A:320 [ASN] B:912 [C] 3.17 B:923 [G] 64.51
A:320 [ASN] B:913 [A] 4.21 B:922 [A] 64.51
A:321 [THR] B:911 [C] 3.01 B:924 [G] sugar:BB 9.65
A:321 [THR] B:912 [C] 2.99 B:923 [G] 9.65
A:322 [ILE] B:911 [C] 3.55 B:924 [G] 65.46
A:322 [ILE] B:912 [C] 4.5 B:923 [G] 65.46
A:323 [GLU] B:910 [G] 2.84 B:925 [C] base:SC 57.35
A:323 [GLU] B:911 [C] 3.28 B:924 [G] 57.35
A:323 [GLU] B:925 [C] 4.31 B:910 [G] 57.35
A:323 [GLU] B:926 [A] 4.69 B:944 [C] 57.35
A:325 [ALA] B:925 [C] 3.73 B:910 [G] 41.6
A:325 [ALA] B:926 [A] 3.74 B:944 [C] 41.6
A:326 [SER] B:925 [C] 3.46 B:910 [G] 42.44
A:329 [SER] B:925 [C] 3.48 B:910 [G] 63.49
A:329 [SER] B:926 [A] 4.24 B:944 [C] 63.49
A:332 [ARG] B:926 [A] 4.53 B:944 [C] 90.71
A:333 [GLU] B:925 [C] 4.68 B:910 [G] 52.11
A:333 [GLU] B:939 [A] 4.99 B:931 [U] 52.11
A:336 [ASN] B:937 [A] 4.77 B:933 [U] 78.41
A:336 [ASN] B:938 [U] 2.98 B:932 [U] sugar:SC 78.41
A:336 [ASN] B:939 [A] 4.98 B:931 [U] 78.41
A:337 [GLU] B:938 [U] 4.49 B:932 [U] 10.25
A:341 [ARG] B:935 [U] 2.81 base:SC 94.3
A:369 [PRO] B:935 [U] 4.09 75.26
A:370 [ASN] B:937 [A] 3.34 B:933 [U] base:SC 49.02
A:370 [ASN] B:938 [U] 3.49 B:932 [U] base:SC 49.02
A:399 [GLN] B:936 [G] 2.83 base:BB, base:BB 35.28
A:400 [TYR] B:936 [G] 3.8 62.21
A:401 [LYS] B:936 [G] 3.33 base:BB 44.32
A:402 [ARG] B:936 [G] 2.94 base:SC 59.97
A:410 [ARG] B:934 [U] 2.89 base/AA stacks 87.9
A:411 [LEU] B:934 [U] 4.39 92.88
A:412 [ARG] B:934 [U] 2.92 73.09
A:412 [ARG] B:935 [U] 3.56 sugar:SC 73.09
A:413 [ASN] B:934 [U] 4.65 54.3
A:442 [LEU] B:934 [U] 3.35 3.82
A:443 [SER] B:934 [U] 3.07 base:BB 43.75
A:444 [LYS] B:934 [U] 3.97 48.97
A:454 [GLY] B:936 [G] 4.87 53.84
A:455 [VAL] B:934 [U] 3.93 66.04
A:455 [VAL] B:935 [U] 3.84 66.04
A:455 [VAL] B:936 [G] 3.46 66.04
A:517 [GLN] B:935 [U] 2.84 base:SC, base:SC 98.0
A:517 [GLN] B:937 [A] 4.98 B:933 [U] 98.0
A:519 [GLU] B:935 [U] 3.37 base/AA stacks 73.98
A:520 [ARG] B:935 [U] 2.71 base:BB 98.46
A:520 [ARG] B:936 [G] 3.18 98.46
A:523 [TYR] B:937 [A] 4.91 B:933 [U] 71.76
A:544 [LEU] B:935 [U] 3.89 93.59
A:544 [LEU] B:937 [A] 3.58 B:933 [U] 93.59
A:545 [ARG] B:927 [C] 3.72 B:943 [G] 70.31
A:545 [ARG] B:928 [C] 4.37 B:942 [G] 70.31
A:545 [ARG] B:936 [G] 4.35 70.31
A:545 [ARG] B:937 [A] 3.31 B:933 [U] 70.31
A:545 [ARG] B:938 [U] 3.49 B:932 [U] 70.31
A:546 [ASP] B:936 [G] 4.05 47.0
A:547 [THR] B:928 [C] 4.76 B:942 [G] 56.14
A:547 [THR] B:936 [G] 3.0 56.14
A:547 [THR] B:937 [A] 3.92 B:933 [U] 56.14
A:548 [TRP] B:936 [G] 3.04 base/AA stacks 0.57

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group89 4JXZ_A_B A: Glutamine--tRNA ligase, Escherichia coli (genetically engineered) B: RNA (71-mer), Synthetic construct (synthetic) P00962 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1ZJW_A_B 4JXZ_A_B 0.98 0.99 0.35 0.94 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare
1QTQ_A_B 4JXZ_A_B 0.97 0.99 0.38 0.94 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare
4JXZ_A_B 4JYZ_A_B 0.98 1.0 0.4 0.91 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare
1N78_A_C 4JXZ_A_B 0.53 0.65 3.61 0.13 tRNA compare
1G59_A_B 4JXZ_A_B 0.45 0.65 3.81 0.11 tRNA compare