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All interfaces > All interologs > Interface groups > group89 > 4JYZ_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4JYZ_A
4JYZ_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:8 [THR] B:914 [A] 4.3 B:908 [4SU] 31.4
A:8 [THR] B:915 [G] 4.33 B:948 [C] 31.4
A:9 [ASN] B:914 [A] 4.31 B:908 [4SU] 79.18
A:10 [PHE] B:914 [A] 4.87 B:908 [4SU] 77.18
A:13 [GLN] B:915 [G] 3.19 B:948 [C] 21.81
A:13 [GLN] B:916 [C] 2.92 base:SC 21.81
A:34 [GLU] B:975 [C] 4.48 96.17
A:34 [GLU] B:976 [A] 3.24 96.17
A:66 [ASP] B:976 [A] 3.84 94.65
A:68 [THR] B:975 [C] 4.74 97.8
A:68 [THR] B:976 [A] 2.39 97.8
A:69 [ASN] B:975 [C] 2.85 sugar:SC 98.84
A:69 [ASN] B:976 [A] 3.68 98.84
A:72 [LYS] B:975 [C] 3.49 70.94
A:124 [LEU] B:974 [C] 2.74 base:BB 83.38
A:125 [THR] B:974 [C] 3.73 44.53
A:126 [PRO] B:974 [C] 3.52 1.66
A:129 [ILE] B:974 [C] 3.68 75.43
A:130 [ARG] B:972 [A] 4.2 59.83
A:130 [ARG] B:973 [G] 3.02 59.83
A:133 [ARG] B:972 [A] 3.03 sugar:SC 96.5
A:133 [ARG] B:973 [G] 2.99 96.5
A:133 [ARG] B:974 [C] 2.7 96.5
A:134 [GLY] B:972 [A] 3.93 48.03
A:135 [THR] B:972 [A] 3.66 30.92
A:136 [LEU] B:902 [G] 2.92 B:971 [C] 49.82
A:136 [LEU] B:971 [C] 3.79 B:902 [G] 49.82
A:136 [LEU] B:972 [A] 3.75 49.82
A:137 [THR] B:902 [G] 4.11 B:971 [C] 55.69
A:168 [GLY] B:974 [C] 2.94 base:BB 83.33
A:169 [LYS] B:974 [C] 4.8 32.62
A:170 [ALA] B:974 [C] 4.19 60.6
A:171 [CYS] B:974 [C] 3.89 68.65
A:181 [PRO] B:902 [G] 3.3 B:971 [C] base:BB 39.3
A:181 [PRO] B:903 [G] 3.41 B:970 [C] 39.3
A:182 [PHE] B:903 [G] 3.38 B:970 [C] 94.81
A:182 [PHE] B:904 [G] 3.66 B:969 [C] 94.81
A:183 [ILE] B:902 [G] 4.18 B:971 [C] 65.83
A:183 [ILE] B:971 [C] 3.81 B:902 [G] 65.83
A:183 [ILE] B:972 [A] 3.48 65.83
A:184 [VAL] B:971 [C] 4.66 B:902 [G] 71.43
A:189 [VAL] B:974 [C] 3.61 79.88
A:192 [ARG] B:974 [C] 3.64 98.65
A:192 [ARG] B:975 [C] 2.72 98.65
A:192 [ARG] B:976 [A] 2.73 98.65
A:193 [ILE] B:974 [C] 4.53 82.36
A:194 [LYS] B:974 [C] 4.84 45.91
A:194 [LYS] B:975 [C] 2.79 45.91
A:209 [PRO] B:976 [A] 4.08 98.67
A:210 [MET] B:973 [G] 4.03 81.02
A:210 [MET] B:974 [C] 3.35 81.02
A:210 [MET] B:975 [C] 3.66 81.02
A:210 [MET] B:976 [A] 3.75 81.02
A:211 [TYR] B:976 [A] 2.83 base/AA stacks 97.45
A:212 [ASP] B:976 [A] 4.57 96.72
A:231 [LEU] B:905 [G] 4.34 B:968 [C] 70.25
A:232 [GLU] B:970 [C] 3.7 B:903 [G] sugar:BB 98.37
A:232 [GLU] B:976 [A] 4.25 98.37
A:233 [PHE] B:976 [A] 3.43 base/AA stacks 89.27
A:234 [GLN] B:904 [G] 3.56 B:969 [C] 54.55
A:234 [GLN] B:905 [G] 3.51 B:968 [C] sugar:SC 54.55
A:235 [ASP] B:903 [G] 2.99 B:970 [C] base:SC 65.24
A:235 [ASP] B:904 [G] 3.27 B:969 [C] 65.24
A:235 [ASP] B:970 [C] 3.89 B:903 [G] 65.24
A:235 [ASP] B:971 [C] 3.76 B:902 [G] 65.24
A:236 [ASN] B:976 [A] 3.66 92.58
A:237 [ARG] B:904 [G] 4.7 B:969 [C] 72.7
A:237 [ARG] B:905 [G] 3.6 B:968 [C] 72.7
A:238 [ARG] B:904 [G] 3.08 B:969 [C] sugar:SC 66.46
A:238 [ARG] B:905 [G] 3.45 B:968 [C] 66.46
A:259 [SER] B:913 [A] 4.76 B:945 [A] 85.77
A:312 [ARG] B:912 [C] 4.18 B:923 [G] 10.47
A:312 [ARG] B:923 [G] 4.97 B:912 [C] 10.47
A:312 [ARG] B:924 [G] 3.56 B:911 [C] 10.47
A:312 [ARG] B:925 [C] 3.92 B:910 [G] 10.47
A:313 [ILE] B:912 [C] 2.84 B:923 [G] sugar:BB 64.73
A:313 [ILE] B:913 [A] 3.39 B:945 [A] 64.73
A:314 [GLY] B:912 [C] 4.71 B:923 [G] 91.9
A:314 [GLY] B:913 [A] 4.25 B:945 [A] 91.9
A:315 [VAL] B:913 [A] 4.81 B:945 [A] 66.29
A:315 [VAL] B:914 [A] 4.06 B:908 [4SU] 66.29
A:316 [THR] B:913 [A] 2.72 B:945 [A] 84.14
A:316 [THR] B:914 [A] 3.65 B:908 [4SU] 84.14
A:317 [LYS] B:905 [G] 3.7 B:968 [C] 70.77
A:317 [LYS] B:906 [U] 3.48 B:967 [A] 70.77
A:318 [GLN] B:906 [U] 3.49 B:967 [A] 52.78
A:318 [GLN] B:907 [A] 3.33 B:966 [U] 52.78
A:318 [GLN] B:908 [4SU] 3.31 B:914 [A] 52.78
A:318 [GLN] B:913 [A] 3.6 B:945 [A] 52.78
A:318 [GLN] B:914 [A] 4.0 B:908 [4SU] 52.78
A:319 [ASP] B:906 [U] 4.17 B:967 [A] 54.28
A:319 [ASP] B:912 [C] 4.32 B:923 [G] 54.28
A:319 [ASP] B:913 [A] 4.95 B:945 [A] 54.28
A:319 [ASP] B:969 [C] 3.12 B:904 [G] sugar:SC 54.28
A:320 [ASN] B:912 [C] 3.33 B:923 [G] 65.96
A:320 [ASN] B:913 [A] 4.4 B:945 [A] 65.96
A:321 [THR] B:911 [C] 2.88 B:924 [G] sugar:BB 22.32
A:321 [THR] B:912 [C] 2.91 B:923 [G] 22.32
A:322 [ILE] B:911 [C] 3.61 B:924 [G] 68.44
A:322 [ILE] B:912 [C] 4.52 B:923 [G] 68.44
A:323 [GLU] B:910 [G] 2.82 B:925 [C] base:SC 50.95
A:323 [GLU] B:911 [C] 3.33 B:924 [G] 50.95
A:323 [GLU] B:925 [C] 4.25 B:910 [G] 50.95
A:323 [GLU] B:926 [A] 4.62 B:944 [C] 50.95
A:325 [ALA] B:925 [C] 3.69 B:910 [G] 46.43
A:325 [ALA] B:926 [A] 3.61 B:944 [C] 46.43
A:326 [SER] B:925 [C] 3.48 B:910 [G] 51.17
A:329 [SER] B:925 [C] 3.6 B:910 [G] 63.16
A:329 [SER] B:926 [A] 4.14 B:944 [C] 63.16
A:332 [ARG] B:926 [A] 4.37 B:944 [C] 90.49
A:333 [GLU] B:925 [C] 4.95 B:910 [G] 57.8
A:336 [ASN] B:937 [2MA] 4.18 B:933 [U] 77.33
A:336 [ASN] B:938 [PSU] 2.76 B:932 [OMU] sugar:SC 77.33
A:336 [ASN] B:939 [A] 4.79 B:931 [U] 77.33
A:341 [ARG] B:935 [U] 2.69 base:SC, base:SC 93.53
A:341 [ARG] B:937 [2MA] 3.77 B:933 [U] 93.53
A:368 [HIS] B:937 [2MA] 4.49 B:933 [U] 72.22
A:369 [PRO] B:935 [U] 4.02 76.8
A:370 [ASN] B:937 [2MA] 3.35 B:933 [U] base:SC 47.58
A:370 [ASN] B:938 [PSU] 3.43 B:932 [OMU] 47.58
A:399 [GLN] B:936 [G] 2.92 base:BB, base:BB 51.49
A:400 [TYR] B:936 [G] 3.9 64.06
A:401 [LYS] B:936 [G] 3.16 base:BB 44.24
A:402 [ARG] B:936 [G] 2.75 base:SC 59.2
A:410 [ARG] B:934 [1RN] 2.49 base:SC 86.68
A:411 [LEU] B:934 [1RN] 4.29 92.66
A:412 [ARG] B:934 [1RN] 3.53 73.62
A:412 [ARG] B:935 [U] 3.49 73.62
A:413 [ASN] B:934 [1RN] 3.7 54.27
A:414 [ALA] B:934 [1RN] 4.56 60.6
A:441 [THR] B:934 [1RN] 4.63 50.39
A:442 [LEU] B:934 [1RN] 2.75 6.44
A:443 [SER] B:934 [1RN] 3.13 54.17
A:444 [LYS] B:934 [1RN] 3.34 49.73
A:445 [ASP] B:934 [1RN] 4.1 30.37
A:454 [GLY] B:936 [G] 4.61 59.1
A:455 [VAL] B:934 [1RN] 3.43 64.99
A:455 [VAL] B:935 [U] 3.88 64.99
A:455 [VAL] B:936 [G] 4.0 64.99
A:517 [GLN] B:935 [U] 2.74 base:SC, base:SC 95.47
A:517 [GLN] B:937 [2MA] 4.93 B:933 [U] 95.47
A:519 [GLU] B:935 [U] 3.15 72.06
A:520 [ARG] B:935 [U] 2.62 base:BB 96.09
A:520 [ARG] B:936 [G] 2.87 96.09
A:523 [TYR] B:937 [2MA] 4.65 B:933 [U] 73.02
A:544 [LEU] B:935 [U] 3.81 91.93
A:544 [LEU] B:937 [2MA] 3.48 B:933 [U] 91.93
A:545 [ARG] B:927 [C] 3.05 B:943 [G] 64.29
A:545 [ARG] B:928 [C] 4.49 B:942 [G] 64.29
A:545 [ARG] B:936 [G] 4.45 64.29
A:545 [ARG] B:937 [2MA] 3.15 B:933 [U] 64.29
A:545 [ARG] B:938 [PSU] 3.21 B:932 [OMU] 64.29
A:546 [ASP] B:936 [G] 4.42 46.36
A:547 [THR] B:936 [G] 2.71 62.05
A:547 [THR] B:937 [2MA] 4.75 B:933 [U] 62.05
A:548 [TRP] B:936 [G] 3.05 base/AA stacks 0.16

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group89 4JYZ_A_B A: Glutamine--tRNA ligase, Escherichia coli (genetically engineered) B: RNA (72-mer), Escherichia coli (natural) P00962 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1G59_A_B 4JYZ_A_B 0.44 0.66 3.78 0.1 tRNA compare
1N78_A_C 4JYZ_A_B 0.52 0.66 3.55 0.12 tRNA compare
1ZJW_A_B 4JYZ_A_B 0.98 0.99 0.42 0.85 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare
1QTQ_A_B 4JYZ_A_B 0.98 0.99 0.46 0.87 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare
4JXZ_A_B 4JYZ_A_B 0.98 1.0 0.4 0.91 HUP domains & Ribosomal protein L25-like & Zn-binding domain in glutaminyl-tRNA synthetase tRNA compare