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All interfaces > All interologs > Interface groups > group9 > 3TS2_A_U

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3TS2_A
3TS2_U
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:45 [LYS] U:12 [U] 3.29 base:SC 78.52
A:46 [TRP] U:12 [U] 3.21 base:SC 69.96
A:46 [TRP] U:13 [A] 3.38 base/AA stacks 69.96
A:47 [PHE] U:13 [A] 4.82 82.54
A:47 [PHE] U:15 [C] 2.86 base:BB 82.54
A:48 [ASN] U:13 [A] 3.24 base:SC 84.0
A:48 [ASN] U:14 [C] 3.73 sugar:SC 84.0
A:48 [ASN] U:15 [C] 3.36 base/AA stacks 84.0
A:49 [VAL] U:15 [C] 3.19 base:BB 53.68
A:50 [ARG] U:6 [C] 2.69 base:SC, base:SC, base:SC 25.34
A:50 [ARG] U:9 [U] 3.62 25.34
A:50 [ARG] U:15 [C] 3.04 base:BB 25.34
A:50 [ARG] U:16 [A] 2.95 U:5 [U] base/AA stacks 25.34
A:51 [MET] U:9 [U] 2.62 sugar:BB 81.29
A:51 [MET] U:10 [G] 3.67 81.29
A:51 [MET] U:13 [A] 3.93 81.29
A:51 [MET] U:15 [C] 4.95 81.29
A:52 [GLY] U:9 [U] 4.67 90.27
A:52 [GLY] U:10 [G] 4.94 90.27
A:53 [PHE] U:9 [U] 4.79 63.89
A:53 [PHE] U:10 [G] 3.96 63.89
A:53 [PHE] U:11 [A] 3.41 63.89
A:53 [PHE] U:13 [A] 4.32 63.89
A:55 [PHE] U:11 [A] 4.18 87.71
A:55 [PHE] U:12 [U] 3.42 base/AA stacks 87.71
A:71 [ASP] U:12 [U] 2.77 base:SC 87.09
A:73 [PHE] U:10 [G] 3.38 88.37
A:73 [PHE] U:11 [A] 3.4 base/AA stacks 88.37
A:75 [HIS] U:10 [G] 2.74 base/AA stacks 94.35
A:76 [GLN] U:8 [A] 3.33 sugar:SC base/AA stacks 66.11
A:76 [GLN] U:10 [G] 5.0 66.11
A:77 [SER] U:10 [G] 3.71 84.77
A:78 [LYS] U:10 [G] 2.88 base:SC 63.85
A:83 [GLY] U:7 [U] 3.12 74.37
A:83 [GLY] U:8 [A] 2.96 base:BB 74.37
A:84 [PHE] U:7 [U] 3.69 47.4
A:84 [PHE] U:8 [A] 3.48 47.4
A:85 [ARG] U:8 [A] 2.7 base:BB base/AA stacks 73.82
A:100 [SER] U:11 [A] 2.77 base:SC 61.93
A:102 [LYS] U:10 [G] 4.54 63.79
A:102 [LYS] U:11 [A] 3.56 63.79
A:103 [GLY] U:11 [A] 3.99 82.65
A:104 [LEU] U:11 [A] 3.79 40.13
A:105 [GLU] U:10 [G] 4.55 59.65
A:105 [GLU] U:11 [A] 2.95 base:SC 59.65
A:122 [ARG] U:6 [C] 4.26 54.19
A:122 [ARG] U:15 [C] 3.22 sugar:SC base/AA stacks 54.19
A:123 [ARG] U:6 [C] 3.53 base/AA stacks 32.7
A:123 [ARG] U:7 [U] 3.05 32.7

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group9 3TS2_A_U A: Protein lin-28 homolog a, Mus musculus (genetically engineered) U: N/A Q8K3Y3 Nucleic acid-binding proteins & CCHC-type 1 zinc finger ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3TS2_A_U 5UDZ_A_V 0.80 0.86 0.69 0.45 Nucleic acid-binding proteins & CCHC-type 1 zinc finger compare