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All interfaces > All interologs > Interface groups > group9 > 5UDZ_A_V

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Licorice
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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5UDZ_A
5UDZ_V
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:45 [LYS] V:11 [U] 4.48 77.58
A:45 [LYS] V:12 [U] 3.37 77.58
A:46 [TRP] V:11 [U] 3.14 base:SC 67.56
A:46 [TRP] V:12 [U] 3.06 base/AA stacks 67.56
A:46 [TRP] V:13 [U] 4.94 67.56
A:47 [PHE] V:7 [G] 4.23 84.75
A:47 [PHE] V:13 [U] 3.34 84.75
A:47 [PHE] V:14 [U] 3.39 V:6 [A] 84.75
A:48 [ASN] V:13 [U] 3.56 83.52
A:48 [ASN] V:14 [U] 3.56 V:6 [A] 83.52
A:49 [VAL] V:6 [A] 4.52 V:14 [U] 61.79
A:49 [VAL] V:7 [G] 2.94 base:BB 61.79
A:49 [VAL] V:14 [U] 2.93 V:6 [A] 61.79
A:50 [ARG] V:7 [G] 4.73 19.21
A:50 [ARG] V:8 [U] 2.78 base:SC 19.21
A:50 [ARG] V:14 [U] 3.04 V:6 [A] sugar:BB 19.21
A:50 [ARG] V:15 [A] 2.76 V:5 [U] 19.21
A:51 [MET] V:7 [G] 4.24 77.68
A:51 [MET] V:8 [U] 2.57 sugar:BB 77.68
A:51 [MET] V:9 [G] 4.59 77.68
A:52 [GLY] V:7 [G] 3.57 90.76
A:52 [GLY] V:8 [U] 4.77 90.76
A:53 [PHE] V:8 [U] 3.37 64.27
A:53 [PHE] V:9 [G] 3.76 64.27
A:53 [PHE] V:10 [A] 4.16 64.27
A:53 [PHE] V:11 [U] 4.95 64.27
A:55 [PHE] V:10 [A] 3.44 91.24
A:55 [PHE] V:11 [U] 3.31 base/AA stacks 91.24
A:71 [ASP] V:11 [U] 3.12 base:SC 86.15
A:73 [PHE] V:9 [G] 3.6 88.83
A:73 [PHE] V:10 [A] 3.29 base/AA stacks 88.83
A:75 [HIS] V:9 [G] 2.82 base/AA stacks 91.49
A:76 [GLN] V:7 [G] 3.2 base/AA stacks 71.82
A:77 [SER] V:9 [G] 3.41 83.65
A:78 [LYS] V:9 [G] 2.71 base:SC 62.84
A:83 [GLY] V:7 [G] 4.47 78.8
A:84 [PHE] V:6 [A] 3.19 V:14 [U] base/AA stacks 60.57
A:84 [PHE] V:7 [G] 3.15 base/AA stacks 60.57
A:84 [PHE] V:14 [U] 4.65 V:6 [A] 60.57
A:85 [ARG] V:7 [G] 2.69 base:BB, base:BB, base:BB 81.3
A:86 [SER] V:7 [G] 4.88 70.82
A:89 [GLU] V:13 [U] 3.42 base:SC 57.46
A:100 [SER] V:10 [A] 3.19 base:SC 62.39
A:102 [LYS] V:9 [G] 3.06 sugar:SC 64.58
A:102 [LYS] V:10 [A] 3.15 64.58
A:103 [GLY] V:10 [A] 3.16 base:BB 80.94
A:104 [LEU] V:10 [A] 3.68 31.97
A:105 [GLU] V:9 [G] 4.65 68.05
A:105 [GLU] V:10 [A] 3.44 base:SC 68.05
A:120 [SER] V:14 [U] 4.23 V:6 [A] 45.94
A:122 [ARG] V:4 [G] 4.02 V:16 [C] 59.86
A:122 [ARG] V:5 [U] 4.23 V:15 [A] 59.86
A:122 [ARG] V:14 [U] 3.72 V:6 [A] base:SC 59.86
A:122 [ARG] V:15 [A] 3.31 V:5 [U] base:SC 59.86
A:122 [ARG] V:16 [C] 3.64 V:4 [G] 59.86
A:124 [PRO] V:4 [G] 3.7 V:16 [C] 42.96
A:124 [PRO] V:5 [U] 3.76 V:15 [A] 42.96
A:125 [LYS] V:3 [G] 4.99 V:17 [C] 17.93
A:125 [LYS] V:4 [G] 2.72 V:16 [C] 17.93

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group9 5UDZ_A_V A: Protein lin-28 homolog a, Homo sapiens (genetically engineered) V: Let-7f-1 pre-element, Homo sapiens (synthetic) Q9H9Z2 Nucleic acid-binding proteins & CCHC-type 1 zinc finger ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3TS2_A_U 5UDZ_A_V 0.80 0.86 0.69 0.45 Nucleic acid-binding proteins & CCHC-type 1 zinc finger compare