RNAprotDB

All interfaces > All interologs > Interface groups > group90 > 1TFW_A_G,J

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1TFW_A
1TFW_G,J
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:72 [LYS] G:2 [G] 4.12 J:85 [C] 67.59
A:73 [GLU] G:2 [G] 3.18 J:85 [C] 62.0
A:76 [ARG] G:2 [G] 2.92 J:85 [C] 66.65
A:76 [ARG] J:85 [C] 4.82 G:2 [G] 66.65
A:80 [LEU] J:85 [C] 4.69 G:2 [G] 79.49
A:92 [ILE] J:85 [C] 3.47 G:2 [G] 57.72
A:93 [ARG] J:84 [G] 3.91 G:3 [C] 59.66
A:93 [ARG] J:85 [C] 3.85 G:2 [G] 59.66
A:94 [TYR] G:2 [G] 4.77 J:85 [C] 93.11
A:94 [TYR] J:83 [C] 3.38 G:4 [G] 93.11
A:94 [TYR] J:84 [G] 3.05 G:3 [C] 93.11
A:94 [TYR] J:85 [C] 2.97 G:2 [G] 93.11
A:95 [ALA] G:2 [G] 3.78 J:85 [C] 95.79
A:95 [ALA] G:3 [C] 3.14 J:84 [G] 95.79
A:95 [ALA] J:84 [G] 2.84 G:3 [C] base:BB 95.79
A:95 [ALA] J:85 [C] 3.05 G:2 [G] 95.79
A:95 [ALA] J:86 [A] 4.42 95.79
A:96 [GLU] G:2 [G] 3.84 J:85 [C] 87.55
A:96 [GLU] G:3 [C] 4.45 J:84 [G] 87.55
A:96 [GLU] J:84 [G] 4.22 G:3 [C] 87.55
A:98 [PRO] G:2 [G] 3.43 J:85 [C] 98.32
A:98 [PRO] J:85 [C] 4.1 G:2 [G] 98.32
A:99 [TYR] J:84 [G] 4.36 G:3 [C] 97.34
A:163 [ALA] J:82 [C] 3.41 G:5 [G] 95.59
A:164 [GLU] J:82 [C] 3.39 G:5 [G] 91.67
A:164 [GLU] J:83 [C] 3.6 G:4 [G] 91.67
A:165 [TYR] G:6 [A] 4.43 J:81 [U] 75.93
A:165 [TYR] G:7 [U] 3.78 J:80 [A] 75.93
A:165 [TYR] J:80 [A] 4.97 G:7 [U] 75.93
A:165 [TYR] J:81 [U] 2.59 G:6 [A] base:SC 75.93
A:165 [TYR] J:82 [C] 3.29 G:5 [G] sugar:BB 75.93
A:168 [ARG] G:7 [U] 4.39 J:80 [A] 59.95
A:224 [ARG] J:81 [U] 2.8 G:6 [A] 99.0
A:224 [ARG] J:82 [C] 3.0 G:5 [G] 99.0
A:225 [ASN] J:81 [U] 4.99 G:6 [A] 98.95
A:226 [VAL] J:82 [C] 4.81 G:5 [G] 93.26
A:228 [ALA] J:81 [U] 3.53 G:6 [A] 91.16
A:228 [ALA] J:82 [C] 4.98 G:5 [G] 91.16
A:229 [ASN] J:81 [U] 3.13 G:6 [A] 90.14
A:229 [ASN] J:82 [C] 3.73 G:5 [G] 90.14
A:289 [VAL] J:83 [C] 3.29 G:4 [G] 73.21
A:289 [VAL] J:84 [G] 4.28 G:3 [C] 73.21
A:291 [ASP] G:5 [G] 4.42 J:82 [C] 96.93
A:291 [ASP] G:6 [A] 4.75 J:81 [U] 96.93
A:291 [ASP] J:82 [C] 2.59 G:5 [G] sugar:SC 96.93
A:291 [ASP] J:83 [C] 2.78 G:4 [G] sugar:SC 96.93
A:292 [ASN] G:5 [G] 2.72 J:82 [C] base:SC, sugar:SC 78.55
A:292 [ASN] G:6 [A] 3.18 J:81 [U] sugar:BB 78.55
A:292 [ASN] J:82 [C] 4.85 G:5 [G] 78.55
A:292 [ASN] J:83 [C] 4.8 G:4 [G] 78.55
A:295 [PRO] G:6 [A] 4.74 J:81 [U] 89.85
A:295 [PRO] G:7 [U] 3.46 J:80 [A] 89.85
A:296 [GLN] G:6 [A] 3.25 J:81 [U] sugar:SC 91.67
A:296 [GLN] G:7 [U] 3.62 J:80 [A] 91.67
A:299 [ARG] G:7 [U] 4.2 J:80 [A] 84.89
A:299 [ARG] G:8 [C] 3.24 J:79 [G] 84.89
A:302 [ARG] G:7 [U] 4.65 J:80 [A] 61.17
A:302 [ARG] G:8 [C] 2.88 J:79 [G] 61.17
A:401 [GLY] G:7 [U] 3.29 J:80 [A] 71.75
A:402 [LYS] G:6 [A] 3.49 J:81 [U] 57.74
A:402 [LYS] G:7 [U] 2.85 J:80 [A] 57.74
A:403 [ASN] G:5 [G] 4.81 J:82 [C] 58.02
A:403 [ASN] G:6 [A] 3.95 J:81 [U] 58.02

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group90 1TFW_A_G,J A: tRNA nucleotidyltransferase, Archaeoglobus fulgidus (genetically engineered) G: N/A J: N/A O28126 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1TFW_A_G,J 2DR8_A_B 0.92 0.91 2.77 0.08 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
1TFW_A_G,J 2ZH6_A_B 0.76 0.91 3.01 0.15 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
1TFW_A_G,J 4X4T_A_B,I 0.70 0.94 2.16 0.31 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
1TFW_A_G,J 3OVB_A_C 0.76 0.93 3.04 0.08 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
1TFW_A_G,J 2ZH3_A_B 0.85 0.94 2.1 0.15 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare