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All interfaces > All interologs > Interface groups > group90 > 2DR8_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2DR8_A
2DR8_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:63 [PHE] B:33 [C] 4.05 98.9
A:95 [ALA] B:32 [A] 4.99 95.79
A:96 [GLU] B:32 [A] 3.84 87.55
A:112 [VAL] B:33 [C] 4.45 98.37
A:126 [ALA] B:33 [C] 4.48 92.18
A:127 [VAL] B:33 [C] 3.39 95.3
A:129 [ARG] B:31 [C] 4.27 B:1 [G] 98.95
A:130 [THR] B:33 [C] 2.73 base:SC 95.54
A:163 [ALA] B:32 [A] 3.53 95.59
A:163 [ALA] B:33 [C] 3.67 95.59
A:164 [GLU] B:32 [A] 3.68 91.67
A:164 [GLU] B:33 [C] 3.6 91.67
A:165 [TYR] B:1 [G] 3.5 B:31 [C] 75.93
A:165 [TYR] B:2 [G] 3.58 B:30 [C] 75.93
A:165 [TYR] B:31 [C] 2.42 B:1 [G] base:SC 75.93
A:165 [TYR] B:32 [A] 3.66 75.93
A:168 [ARG] B:2 [G] 4.68 B:30 [C] 59.95
A:224 [ARG] B:31 [C] 3.34 B:1 [G] 99.0
A:224 [ARG] B:32 [A] 3.6 99.0
A:224 [ARG] B:33 [C] 2.88 99.0
A:225 [ASN] B:31 [C] 4.87 B:1 [G] 98.95
A:226 [VAL] B:32 [A] 4.55 93.26
A:228 [ALA] B:30 [C] 4.85 B:2 [G] 91.16
A:228 [ALA] B:31 [C] 3.48 B:1 [G] 91.16
A:229 [ASN] B:31 [C] 3.04 B:1 [G] 90.14
A:229 [ASN] B:32 [A] 4.03 90.14
A:291 [ASP] B:1 [G] 4.46 B:31 [C] 96.93
A:291 [ASP] B:32 [A] 2.35 sugar:SC 96.93
A:291 [ASP] B:33 [C] 4.78 96.93
A:292 [ASN] B:1 [G] 3.2 B:31 [C] sugar:BB 78.55
A:292 [ASN] B:32 [A] 4.51 78.55
A:295 [PRO] B:1 [G] 4.74 B:31 [C] 89.85
A:295 [PRO] B:2 [G] 3.43 B:30 [C] 89.85
A:296 [GLN] B:1 [G] 2.96 B:31 [C] sugar:SC 91.67
A:296 [GLN] B:2 [G] 3.75 B:30 [C] 91.67
A:299 [ARG] B:2 [G] 4.14 B:30 [C] 84.89
A:299 [ARG] B:3 [C] 3.22 B:29 [G] 84.89
A:302 [ARG] B:3 [C] 3.28 B:29 [G] 61.17
A:303 [LYS] B:22 [G] 3.66 B:10 [C] 54.1
A:310 [ARG] B:20 [C] 4.97 B:12 [G] 43.73
A:310 [ARG] B:21 [C] 3.17 B:11 [G] 43.73
A:310 [ARG] B:22 [G] 3.98 B:10 [C] 43.73
A:344 [ARG] B:13 [U] 4.6 B:17 [A] 78.8
A:344 [ARG] B:14 [U] 3.9 78.8
A:344 [ARG] B:15 [C] 4.58 78.8
A:345 [MET] B:15 [C] 3.72 18.35
A:345 [MET] B:16 [G] 4.63 18.35
A:346 [GLY] B:15 [C] 3.64 98.9
A:347 [PRO] B:15 [C] 3.55 98.95
A:354 [ASN] B:15 [C] 2.6 sugar:SC 73.67
A:354 [ASN] B:16 [G] 3.98 73.67
A:357 [LYS] B:15 [C] 3.61 50.7
A:357 [LYS] B:16 [G] 2.83 50.7
A:358 [PHE] B:15 [C] 3.43 96.91
A:361 [ARG] B:13 [U] 4.9 B:17 [A] 79.53
A:361 [ARG] B:14 [U] 2.55 79.53
A:361 [ARG] B:15 [C] 3.12 79.53
A:363 [ARG] B:15 [C] 2.72 11.29
A:373 [ARG] B:15 [C] 4.03 89.87
A:378 [GLU] B:15 [C] 4.78 66.34
A:392 [TYR] B:21 [C] 4.66 B:11 [G] 1.07
A:392 [TYR] B:22 [G] 2.62 B:10 [C] 1.07
A:396 [HIS] B:21 [C] 2.81 B:11 [G] 32.16
A:396 [HIS] B:22 [G] 3.36 B:10 [C] 32.16
A:398 [HIS] B:22 [G] 4.87 B:10 [C] 20.54
A:398 [HIS] B:23 [C] 2.45 B:9 [G] 20.54
A:398 [HIS] B:24 [C] 3.21 B:8 [G] 20.54
A:399 [THR] B:22 [G] 3.96 B:10 [C] 68.1
A:399 [THR] B:23 [C] 3.61 B:9 [G] 68.1
A:401 [GLY] B:2 [G] 3.45 B:30 [C] 71.75
A:402 [LYS] B:1 [G] 3.81 B:31 [C] 57.74
A:402 [LYS] B:2 [G] 2.87 B:30 [C] 57.74
A:403 [ASN] B:1 [G] 4.27 B:31 [C] 58.02

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group90 2DR8_A_B A: Cca-adding enzyme, Archaeoglobus fulgidus (genetically engineered) B: tRNA (33-mer) O28126 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2DR8_A_B 2ZH3_A_B 0.87 0.98 1.12 0.93 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
2DR8_A_B 2ZH6_A_B 0.88 1.0 0.33 0.88 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
2DR8_A_B 4X4T_A_B,I 0.82 0.95 2.04 0.5 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
2DR8_A_B 3OVB_A_C 0.88 0.99 1.0 0.62 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
1TFW_A_G,J 2DR8_A_B 0.92 0.91 2.77 0.08 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare