RNAprotDB

All interfaces > All interologs > Interface groups > group90 > 4X4T_A_B,I

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4X4T_A
4X4T_B,I
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:96 [GLU] B:1 [G] 3.94 B:34 [C] 87.55
A:96 [GLU] B:31 [C] 3.28 base/AA stacks 87.55
A:96 [GLU] B:34 [C] 3.3 B:1 [G] base/AA stacks 87.55
A:129 [ARG] B:33 [C] 4.97 B:2 [G] 98.95
A:163 [ALA] B:31 [C] 3.76 95.59
A:163 [ALA] B:34 [C] 3.84 B:1 [G] 95.59
A:164 [GLU] B:31 [C] 4.21 91.67
A:164 [GLU] B:34 [C] 4.22 B:1 [G] 91.67
A:165 [TYR] B:2 [G] 3.6 B:33 [C] 75.93
A:165 [TYR] B:3 [C] 3.97 B:32 [G] 75.93
A:165 [TYR] B:30 [5BU] 2.74 base:SC 75.93
A:165 [TYR] B:31 [C] 3.18 75.93
A:165 [TYR] B:32 [G] 4.18 B:3 [C] 75.93
A:165 [TYR] B:33 [C] 2.45 B:2 [G] base:SC 75.93
A:165 [TYR] B:34 [C] 3.17 B:1 [G] 75.93
A:168 [ARG] B:3 [C] 4.75 B:32 [G] 59.95
A:224 [ARG] B:30 [5BU] 3.84 99.0
A:224 [ARG] B:31 [C] 3.73 99.0
A:224 [ARG] B:33 [C] 3.85 B:2 [G] 99.0
A:224 [ARG] B:34 [C] 3.79 B:1 [G] 99.0
A:225 [ASN] B:30 [5BU] 4.84 98.95
A:225 [ASN] B:33 [C] 4.91 B:2 [G] 98.95
A:226 [VAL] B:31 [C] 4.79 93.26
A:226 [VAL] B:34 [C] 4.89 B:1 [G] 93.26
A:228 [ALA] B:30 [5BU] 3.35 91.16
A:228 [ALA] B:33 [C] 3.56 B:2 [G] 91.16
A:229 [ASN] B:30 [5BU] 3.26 90.14
A:229 [ASN] B:31 [C] 3.92 90.14
A:229 [ASN] B:33 [C] 3.17 B:2 [G] 90.14
A:229 [ASN] B:34 [C] 3.93 B:1 [G] 90.14
A:291 [ASP] B:1 [G] 4.55 B:34 [C] 96.93
A:291 [ASP] B:2 [G] 4.75 B:33 [C] 96.93
A:291 [ASP] B:31 [C] 2.91 96.93
A:291 [ASP] B:34 [C] 2.97 B:1 [G] 96.93
A:292 [ASN] B:1 [G] 2.73 B:34 [C] base:SC, sugar:SC 78.55
A:292 [ASN] B:2 [G] 3.17 B:33 [C] sugar:BB 78.55
A:292 [ASN] B:34 [C] 4.98 B:1 [G] 78.55
A:295 [PRO] B:2 [G] 4.56 B:33 [C] 89.85
A:295 [PRO] B:3 [C] 3.53 B:32 [G] 89.85
A:296 [GLN] B:2 [G] 3.39 B:33 [C] 91.67
A:296 [GLN] B:3 [C] 3.82 B:32 [G] 91.67
A:299 [ARG] B:3 [C] 3.88 B:32 [G] 84.89
A:299 [ARG] B:4 [C] 3.09 B:28 [G] 84.89
A:299 [ARG] B:22 [5BU] 4.28 B:10 [A] 84.89
A:299 [ARG] B:23 [G] 4.58 B:9 [C] 84.89
A:302 [ARG] B:3 [C] 4.22 B:32 [G] 61.17
A:302 [ARG] B:4 [C] 2.81 B:28 [G] 61.17
A:303 [LYS] B:21 [C] 4.17 B:11 [G] 54.1
A:303 [LYS] B:22 [5BU] 2.95 B:10 [A] 54.1
A:310 [ARG] B:21 [C] 4.46 B:11 [G] 43.73
A:344 [ARG] B:14 [U] 3.64 I:35 [G] 78.8
A:344 [ARG] B:15 [C] 4.6 I:36 [G] 78.8
A:345 [MET] B:15 [C] 3.24 I:36 [G] base:BB 18.35
A:345 [MET] B:16 [G] 3.95 18.35
A:345 [MET] I:36 [G] 4.14 B:15 [C] 18.35
A:346 [GLY] B:15 [C] 3.49 I:36 [G] 98.9
A:346 [GLY] I:36 [G] 3.32 B:15 [C] 98.9
A:347 [PRO] B:15 [C] 3.54 I:36 [G] 98.95
A:347 [PRO] I:36 [G] 3.38 B:15 [C] 98.95
A:348 [GLN] I:36 [G] 3.67 B:15 [C] 69.93
A:351 [ASP] B:15 [C] 4.73 I:36 [G] 0.78
A:351 [ASP] I:36 [G] 3.79 B:15 [C] 0.78
A:354 [ASN] B:15 [C] 2.4 I:36 [G] sugar:SC 73.67
A:354 [ASN] B:16 [G] 3.81 73.67
A:354 [ASN] I:36 [G] 3.34 B:15 [C] 73.67
A:357 [LYS] B:15 [C] 3.35 I:36 [G] sugar:SC 50.7
A:357 [LYS] B:16 [G] 3.94 50.7
A:358 [PHE] B:15 [C] 3.47 I:36 [G] 96.91
A:361 [ARG] B:15 [C] 4.98 I:36 [G] 79.53
A:363 [ARG] B:15 [C] 4.52 I:36 [G] 11.29
A:373 [ARG] B:15 [C] 4.73 I:36 [G] 89.87
A:373 [ARG] I:36 [G] 2.4 B:15 [C] base:SC, base:SC 89.87
A:378 [GLU] B:15 [C] 4.85 I:36 [G] 66.34
A:396 [HIS] B:21 [C] 4.02 B:11 [G] 32.16
A:396 [HIS] B:22 [5BU] 4.15 B:10 [A] 32.16
A:398 [HIS] B:22 [5BU] 4.49 B:10 [A] 20.54
A:398 [HIS] B:23 [G] 2.86 B:9 [C] 20.54
A:398 [HIS] B:24 [C] 4.15 B:8 [G] 20.54
A:399 [THR] B:22 [5BU] 2.52 B:10 [A] 68.1
A:399 [THR] B:23 [G] 3.58 B:9 [C] 68.1
A:401 [GLY] B:3 [C] 3.45 B:32 [G] 71.75
A:402 [LYS] B:2 [G] 3.45 B:33 [C] 57.74
A:402 [LYS] B:3 [C] 2.9 B:32 [G] 57.74
A:403 [ASN] B:2 [G] 3.91 B:33 [C] 58.02

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group90 4X4T_A_B,I A: Cca-adding enzyme, Archaeoglobus fulgidus (strain atcc 49558 / vc-16 / dsm 4304 / jcm 9628 / nbrc 100126) (genetically engineered) B: G70a tRNA minihelix ending in ccacca, Homo sapiens (synthetic) I: Homo sapiens (synthetic) O28126 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1TFW_A_G,J 4X4T_A_B,I 0.70 0.94 2.16 0.31 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
2DR8_A_B 4X4T_A_B,I 0.82 0.95 2.04 0.5 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
3OVB_A_C 4X4T_A_B,I 0.82 0.96 1.48 0.31 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
2ZH6_A_B 4X4T_A_B,I 0.82 0.95 2.03 0.5 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare
2ZH3_A_B 4X4T_A_B,I 0.82 0.96 2.07 0.5 PAP/OAS1 substrate-binding domain & PAP/Archaeal CCA-adding enzyme, C-terminal domain & Nucleotidyltransferase compare