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All interfaces > All interologs > Interface groups > group91 > 1VQ8_T_0

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Licorice
Surface

RNA

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Licorice
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Chain
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Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_T
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
T:1 [SER] 0:331 [A] 3.55 0:345 [G] 88.84
T:1 [SER] 0:332 [G] 4.25 0:344 [C] 88.84
T:1 [SER] 0:446 [G] 3.88 0:36 [C] 88.84
T:1 [SER] 0:447 [A] 2.83 0:35 [U] 88.84
T:2 [LYS] 0:331 [A] 4.29 0:345 [G] 44.68
T:2 [LYS] 0:332 [G] 2.62 0:344 [C] sugar:BB 44.68
T:2 [LYS] 0:447 [A] 2.81 0:35 [U] 44.68
T:2 [LYS] 0:448 [G] 3.2 0:34 [C] 44.68
T:3 [GLN] 0:332 [G] 3.94 0:344 [C] 60.4
T:3 [GLN] 0:447 [A] 3.6 0:35 [U] 60.4
T:3 [GLN] 0:448 [G] 2.97 0:34 [C] base:SC 60.4
T:4 [PRO] 0:31 [C] 4.48 78.71
T:4 [PRO] 0:332 [G] 3.79 0:344 [C] 78.71
T:4 [PRO] 0:333 [G] 3.66 0:343 [C] 78.71
T:5 [ASP] 0:30 [U] 3.44 0:453 [A] sugar:SC 70.03
T:5 [ASP] 0:31 [C] 2.6 70.03
T:5 [ASP] 0:32 [G] 3.95 0:451 [C] 70.03
T:5 [ASP] 0:452 [G] 4.56 70.03
T:6 [LYS] 0:445 [U] 4.76 0:37 [A] 87.66
T:6 [LYS] 0:446 [G] 2.41 0:36 [C] 87.66
T:6 [LYS] 0:447 [A] 4.47 0:35 [U] 87.66
T:7 [GLN] 0:331 [A] 4.4 0:345 [G] 82.84
T:7 [GLN] 0:332 [G] 2.72 0:344 [C] base:SC 82.84
T:7 [GLN] 0:333 [G] 3.53 0:343 [C] 82.84
T:7 [GLN] 0:344 [C] 4.79 0:332 [G] 82.84
T:7 [GLN] 0:345 [G] 4.96 0:331 [A] 82.84
T:8 [ARG] 0:30 [U] 3.08 0:453 [A] 95.14
T:8 [ARG] 0:31 [C] 3.04 95.14
T:8 [ARG] 0:333 [G] 3.49 0:343 [C] 95.14
T:8 [ARG] 0:334 [G] 2.95 0:342 [C] 95.14
T:9 [LYS] 0:31 [C] 4.77 69.9
T:9 [LYS] 0:32 [G] 3.0 0:451 [C] 69.9
T:11 [GLN] 0:332 [G] 4.29 0:344 [C] 19.54
T:11 [GLN] 0:333 [G] 3.25 0:343 [C] sugar:SC 19.54
T:11 [GLN] 0:334 [G] 3.44 0:342 [C] 19.54
T:11 [GLN] 0:344 [C] 4.39 0:332 [G] 19.54
T:12 [ARG] 0:30 [U] 4.55 0:453 [A] 30.0
T:12 [ARG] 0:31 [C] 2.68 sugar:SC base/AA stacks 30.0
T:13 [ARG] 0:31 [C] 3.18 56.89
T:13 [ARG] 0:32 [G] 3.37 0:451 [C] 56.89
T:15 [PRO] 0:100 [C] 3.5 0:77 [G] 66.02
T:15 [PRO] 0:101 [C] 3.84 0:76 [G] 66.02
T:16 [LEU] 0:82 [C] 3.62 0:92 [G] 6.91
T:16 [LEU] 0:83 [C] 3.92 0:91 [G] 6.91
T:16 [LEU] 0:99 [A] 3.32 0:78 [G] 6.91
T:16 [LEU] 0:100 [C] 3.36 0:77 [G] 6.91
T:17 [HIS] 0:77 [G] 4.01 0:100 [C] 88.32
T:17 [HIS] 0:78 [G] 4.06 0:99 [A] 88.32
T:17 [HIS] 0:99 [A] 4.11 0:78 [G] 88.32
T:17 [HIS] 0:100 [C] 2.78 0:77 [G] sugar:BB, sugar:SC 88.32
T:17 [HIS] 0:101 [C] 2.99 0:76 [G] base/AA stacks 88.32
T:18 [GLU] 0:100 [C] 4.97 0:77 [G] 0.0
T:18 [GLU] 0:301 [G] 4.32 0:350 [C] 0.0
T:20 [HIS] 0:78 [G] 4.13 0:99 [A] 51.98
T:20 [HIS] 0:79 [G] 3.47 0:98 [A] 51.98
T:20 [HIS] 0:80 [A] 4.66 0:97 [G] 51.98
T:20 [HIS] 0:99 [A] 2.98 0:78 [G] base:SC 51.98
T:21 [LYS] 0:343 [C] 3.43 0:333 [G] sugar:BB 61.51
T:21 [LYS] 0:344 [C] 3.3 0:332 [G] 61.51
T:21 [LYS] 0:345 [G] 3.77 0:331 [A] 61.51
T:24 [ARG] 0:343 [C] 3.64 0:333 [G] 65.7
T:24 [ARG] 0:344 [C] 2.86 0:332 [G] 65.7
T:25 [ALA] 0:343 [C] 4.27 0:333 [G] 73.38
T:26 [THR] 0:342 [C] 3.32 0:334 [G] 65.79
T:26 [THR] 0:343 [C] 2.96 0:333 [G] 65.79
T:32 [ARG] 0:307 [G] 3.87 0:323 [C] 73.95
T:32 [ARG] 0:308 [U] 2.89 0:339 [A] 73.95
T:32 [ARG] 0:342 [C] 4.95 0:334 [G] 73.95
T:38 [ARG] 0:305 [A] 4.68 85.42
T:38 [ARG] 0:306 [A] 2.81 85.42
T:38 [ARG] 0:307 [G] 2.78 0:323 [C] 85.42
T:38 [ARG] 0:308 [U] 3.8 0:339 [A] 85.42
T:38 [ARG] 0:341 [C] 4.94 0:324 [G] 85.42
T:38 [ARG] 0:342 [C] 4.34 0:334 [G] 85.42
T:38 [ARG] 0:343 [C] 4.02 0:333 [G] 85.42
T:39 [ASN] 0:343 [C] 2.69 0:333 [G] 71.52
T:39 [ASN] 0:344 [C] 3.53 0:332 [G] 71.52
T:41 [ARG] 0:79 [G] 3.88 0:98 [A] 61.41
T:41 [ARG] 0:80 [A] 3.35 0:97 [G] 61.41
T:41 [ARG] 0:81 [G] 3.32 0:93 [C] 61.41
T:42 [VAL] 0:81 [G] 4.07 0:93 [C] 76.31
T:43 [ASN] 0:80 [A] 2.99 0:97 [G] 73.94
T:43 [ASN] 0:81 [G] 3.17 0:93 [C] 73.94
T:44 [ALA] 0:80 [A] 4.77 0:97 [G] 63.17
T:44 [ALA] 0:81 [G] 2.75 0:93 [C] 63.17
T:51 [LEU] 0:308 [U] 4.22 0:339 [A] 49.62
T:51 [LEU] 0:309 [C] 4.17 0:322 [G] 49.62
T:51 [LEU] 0:317 [A] 4.59 0:313 [U] 49.62
T:52 [ARG] 0:308 [U] 2.87 0:339 [A] base:SC base/AA stacks 79.88
T:52 [ARG] 0:316 [A] 2.77 0:1314 [U] 79.88
T:52 [ARG] 0:317 [A] 2.33 0:313 [U] 79.88
T:52 [ARG] 0:318 [C] 2.71 79.88
T:53 [GLY] 0:316 [A] 4.06 0:1314 [U] 98.93
T:53 [GLY] 0:317 [A] 4.25 0:313 [U] 98.93
T:53 [GLY] 0:336 [G] 3.07 0:315 [G] 98.93
T:54 [ASP] 0:315 [G] 2.82 0:336 [G] sugar:SC, sugar:SC 35.36
T:54 [ASP] 0:316 [A] 2.84 0:1314 [U] 35.36
T:54 [ASP] 0:336 [G] 2.76 0:315 [G] base:BB, base:SC 35.36
T:54 [ASP] 0:483 [C] 4.59 35.36
T:54 [ASP] 0:507 [A] 4.75 35.36
T:55 [PHE] 0:336 [G] 4.72 0:315 [G] 33.32
T:56 [ALA] 0:317 [A] 4.94 0:313 [U] 63.5
T:65 [VAL] 0:81 [G] 3.34 0:93 [C] 86.72
T:65 [VAL] 0:82 [C] 3.93 0:92 [G] 86.72
T:66 [ASP] 0:82 [C] 4.09 0:92 [G] 71.98
T:67 [LEU] 0:81 [G] 3.8 0:93 [C] 5.91
T:67 [LEU] 0:82 [C] 3.02 0:92 [G] 5.91
T:67 [LEU] 0:99 [A] 4.25 0:78 [G] 5.91
T:68 [ASP] 0:82 [C] 3.94 0:92 [G] 43.71
T:68 [ASP] 0:84 [G] 4.85 0:62 [C] 43.71
T:68 [ASP] 0:85 [C] 3.15 0:61 [G] 43.71
T:68 [ASP] 0:87 [C] 3.51 43.71
T:69 [LYS] 0:87 [C] 2.94 sugar:SC 33.95
T:79 [LEU] 0:484 [A] 3.33 0:508 [A] 35.06
T:79 [LEU] 0:486 [A] 3.37 0:511 [A] 35.06
T:80 [GLU] 0:486 [A] 3.04 0:511 [A] sugar:BB 45.25
T:81 [LYS] 0:485 [A] 4.97 0:481 [U] 86.79
T:81 [LYS] 0:486 [A] 3.2 0:511 [A] 86.79
T:81 [LYS] 0:487 [G] 3.74 0:515 [C] 86.79
T:82 [THR] 0:486 [A] 4.19 0:511 [A] 56.93
T:82 [THR] 0:487 [G] 2.49 0:515 [C] 56.93
T:82 [THR] 0:488 [U] 3.17 0:503 [G] 56.93
T:82 [THR] 0:489 [A] 3.23 56.93
T:82 [THR] 0:503 [G] 4.66 0:488 [U] 56.93
T:82 [THR] 0:504 [G] 4.25 0:512 [G] 56.93
T:83 [ASP] 0:487 [G] 4.82 0:515 [C] 71.68
T:83 [ASP] 0:489 [A] 3.63 71.68
T:87 [VAL] 0:486 [A] 3.55 0:511 [A] 46.84
T:88 [PRO] 0:484 [A] 4.91 0:508 [A] 8.34
T:89 [ARG] 0:336 [G] 3.89 0:315 [G] base/AA stacks 43.54
T:89 [ARG] 0:483 [C] 2.78 base:SC, sugar:SC 43.54
T:89 [ARG] 0:484 [A] 3.02 0:508 [A] 43.54
T:90 [PRO] 0:484 [A] 3.53 0:508 [A] 54.19
T:90 [PRO] 0:485 [A] 3.83 0:481 [U] 54.19
T:92 [ASP] 0:334 [G] 4.83 0:342 [C] 62.96
T:92 [ASP] 0:335 [U] 3.13 62.96
T:92 [ASP] 0:336 [G] 4.62 0:315 [G] 62.96
T:93 [THR] 0:342 [C] 4.83 0:334 [G] 66.68
T:94 [SER] 0:308 [U] 3.71 0:339 [A] 98.38
T:94 [SER] 0:334 [G] 2.92 0:342 [C] base:SC 98.38
T:94 [SER] 0:335 [U] 3.74 98.38
T:94 [SER] 0:342 [C] 2.57 0:334 [G] base:SC, sugar:BB 98.38
T:94 [SER] 0:343 [C] 4.1 0:333 [G] 98.38
T:95 [ASN] 0:308 [U] 3.78 0:339 [A] 90.73
T:95 [ASN] 0:335 [U] 3.44 90.73
T:95 [ASN] 0:336 [G] 3.38 0:315 [G] 90.73
T:95 [ASN] 0:342 [C] 4.65 0:334 [G] 90.73
T:96 [VAL] 0:342 [C] 4.78 0:334 [G] 71.19
T:97 [ARG] 0:308 [U] 3.08 0:339 [A] 39.37
T:97 [ARG] 0:309 [C] 2.39 0:322 [G] 39.37
T:105 [ASP] 0:80 [A] 4.19 0:97 [G] 84.68
T:105 [ASP] 0:95 [A] 3.18 84.68
T:105 [ASP] 0:97 [G] 2.7 0:80 [A] base:SC, base:SC 84.68
T:106 [GLU] 0:97 [G] 4.73 0:80 [A] 33.98
T:107 [LYS] 0:78 [G] 4.95 0:99 [A] 28.45
T:107 [LYS] 0:79 [G] 2.74 0:98 [A] base:SC 28.45
T:107 [LYS] 0:97 [G] 3.52 0:80 [A] sugar:SC 28.45
T:108 [ARG] 0:80 [A] 4.08 0:97 [G] 92.55
T:111 [ARG] 0:79 [G] 3.24 0:98 [A] 28.37
T:111 [ARG] 0:80 [A] 3.34 0:97 [G] 28.37
T:116 [ASP] 0:302 [A] 4.89 0:349 [U] 20.57
T:116 [ASP] 0:303 [C] 3.35 0:348 [C] 20.57
T:117 [ASP] 0:78 [G] 4.08 0:99 [A] 10.48
T:117 [ASP] 0:302 [A] 4.47 0:349 [U] 10.48
T:117 [ASP] 0:303 [C] 3.05 0:348 [C] 10.48
T:118 [SER] 0:79 [G] 4.73 0:98 [A] 56.25
T:118 [SER] 0:303 [C] 3.93 0:348 [C] 56.25
T:118 [SER] 0:304 [G] 3.65 0:347 [A] 56.25

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group91 1VQ8_T_0 T: 50s ribosomal protein l24p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P10972 SH3 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_T_0 6AZ3_W_1 0.77 0.77 1.62 0.32 SH3 compare
1VQ8_T_0 7O7Y_BY_B5 0.72 0.94 2.13 0.23 SH3 compare
1VQ8_T_0 7O7Y_BY_B8 0.67 0.79 1.22 0.29 SH3 compare
1VQ8_T_0 6AZ3_W_7 0.61 0.79 1.61 0.2 SH3 compare
1VQ8_T_0 1YHQ_T_0 0.99 1.0 0.19 0.96 SH3 Archaeal large subunit ribosomal RNA compare