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All interfaces > All interologs > Interface groups > group91 > 1VQ8_T_0 vs 1YHQ_T_0

Interface analysis


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Licorice
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RNA

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Licorice
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Common contacts -

1VQ8_T
1VQ8_0
1YHQ_T
1YHQ_0
Conserved?
T:66 [ASP] 0:82 [C] T:66 [ASP] 0:82 [C] ✔
T:65 [VAL] 0:81 [G] T:65 [VAL] 0:81 [G] ✔
T:65 [VAL] 0:82 [C] T:65 [VAL] 0:82 [C] ✔
T:4 [PRO] 0:31 [C] T:4 [PRO] 0:31 [C] ✔
T:4 [PRO] 0:332 [G] T:4 [PRO] 0:332 [G] ✔
T:4 [PRO] 0:333 [G] T:4 [PRO] 0:333 [G] ✔
T:20 [HIS] 0:78 [G] T:20 [HIS] 0:78 [G] ✔
T:20 [HIS] 0:79 [G] T:20 [HIS] 0:79 [G] ✔
T:20 [HIS] 0:80 [A] T:20 [HIS] 0:80 [A] ✔
T:20 [HIS] 0:99 [A] T:20 [HIS] 0:99 [A] ✔
T:32 [ARG] 0:307 [G] T:32 [ARG] 0:307 [G] ✔
T:32 [ARG] 0:308 [U] T:32 [ARG] 0:308 [U] ✔
T:32 [ARG] 0:342 [C] T:32 [ARG] 0:342 [C] ✔
T:108 [ARG] 0:80 [A] T:108 [ARG] 0:80 [A] ✔
T:56 [ALA] 0:317 [A] T:56 [ALA] 0:317 [A] ✔
T:43 [ASN] 0:80 [A] T:43 [ASN] 0:80 [A] ✔
T:43 [ASN] 0:81 [G] T:43 [ASN] 0:81 [G] ✔
T:18 [GLU] 0:301 [G] T:18 [GLU] 0:301 [C] ✔
T:24 [ARG] 0:343 [C] T:24 [ARG] 0:343 [C] ✔
T:24 [ARG] 0:344 [C] T:24 [ARG] 0:344 [C] ✔
T:41 [ARG] 0:79 [G] T:41 [ARG] 0:79 [G] ✔
T:41 [ARG] 0:80 [A] T:41 [ARG] 0:80 [A] ✔
T:41 [ARG] 0:81 [G] T:41 [ARG] 0:81 [G] ✔
T:25 [ALA] 0:343 [C] T:25 [ALA] 0:343 [C] ✔
T:11 [GLN] 0:332 [G] T:11 [GLN] 0:332 [G] ✔
T:11 [GLN] 0:333 [G] T:11 [GLN] 0:333 [G] ✔
T:11 [GLN] 0:334 [G] T:11 [GLN] 0:334 [G] ✔
T:11 [GLN] 0:344 [C] T:11 [GLN] 0:344 [C] ✔
T:118 [SER] 0:79 [G] T:118 [SER] 0:79 [G] ✔
T:118 [SER] 0:303 [C] T:118 [SER] 0:303 [C] ✔
T:118 [SER] 0:304 [G] T:118 [SER] 0:304 [G] ✔
T:83 [ASP] 0:487 [G] T:83 [ASP] 0:487 [G] ✔
T:83 [ASP] 0:489 [A] T:83 [ASP] 0:489 [A] ✔
T:15 [PRO] 0:100 [C] T:15 [PRO] 0:100 [C] ✔
T:15 [PRO] 0:101 [C] T:15 [PRO] 0:101 [C] ✔
T:21 [LYS] 0:343 [C] T:21 [LYS] 0:343 [C] ✔
T:21 [LYS] 0:344 [C] T:21 [LYS] 0:344 [C] ✔
T:21 [LYS] 0:345 [G] T:21 [LYS] 0:345 [G] ✔
T:79 [LEU] 0:484 [A] T:79 [LEU] 0:484 [A] ✔
T:79 [LEU] 0:486 [A] T:79 [LEU] 0:486 [A] ✔
T:69 [LYS] 0:87 [C] T:69 [LYS] 0:87 [C] ✔
T:96 [VAL] 0:342 [C] T:96 [VAL] 0:342 [C] ✔
T:95 [ASN] 0:308 [U] T:95 [ASN] 0:308 [U] ✔
T:95 [ASN] 0:335 [U] T:95 [ASN] 0:335 [U] ✔
T:95 [ASN] 0:336 [G] T:95 [ASN] 0:336 [G] ✔
T:95 [ASN] 0:342 [C] T:95 [ASN] 0:342 [C] ✔
T:81 [LYS] 0:485 [A] T:81 [LYS] 0:485 [A] ✔
T:81 [LYS] 0:486 [A] T:81 [LYS] 0:486 [A] ✔
T:81 [LYS] 0:487 [G] T:81 [LYS] 0:487 [G] ✔
T:67 [LEU] 0:81 [G] T:67 [LEU] 0:81 [G] ✔
T:67 [LEU] 0:82 [C] T:67 [LEU] 0:82 [C] ✔
T:67 [LEU] 0:99 [A] T:67 [LEU] 0:99 [A] ✔
T:97 [ARG] 0:308 [U] T:97 [ARG] 0:308 [U] ✔
T:97 [ARG] 0:309 [C] T:97 [ARG] 0:309 [C] ✔
T:53 [GLY] 0:316 [A] T:53 [GLY] 0:316 [A] ✔
T:53 [GLY] 0:317 [A] T:53 [GLY] 0:317 [A] ✔
T:53 [GLY] 0:336 [G] T:53 [GLY] 0:336 [G] ✔
T:6 [LYS] 0:445 [U] T:6 [LYS] 0:445 [U] ✔
T:6 [LYS] 0:446 [G] T:6 [LYS] 0:446 [G] ✔
T:6 [LYS] 0:447 [A] T:6 [LYS] 0:447 [A] ✔
T:117 [ASP] 0:78 [G] T:117 [ASP] 0:78 [G] ✔
T:117 [ASP] 0:302 [A] T:117 [ASP] 0:302 [A] ✔
T:117 [ASP] 0:303 [C] T:117 [ASP] 0:303 [C] ✔
T:116 [ASP] 0:302 [A] T:116 [ASP] 0:302 [A] ✔
T:116 [ASP] 0:303 [C] T:116 [ASP] 0:303 [C] ✔
T:2 [LYS] 0:331 [A] T:2 [LYS] 0:331 [A] ✔
T:2 [LYS] 0:332 [G] T:2 [LYS] 0:332 [G] ✔
T:2 [LYS] 0:447 [A] T:2 [LYS] 0:447 [A] ✔
T:2 [LYS] 0:448 [G] T:2 [LYS] 0:448 [G] ✔
T:94 [SER] 0:308 [U] T:94 [SER] 0:308 [U] ✔
T:94 [SER] 0:334 [G] T:94 [SER] 0:334 [G] ✔
T:94 [SER] 0:335 [U] T:94 [SER] 0:335 [U] ✔
T:94 [SER] 0:342 [C] T:94 [SER] 0:342 [C] ✔
T:94 [SER] 0:343 [C] T:94 [SER] 0:343 [C] ✔
T:90 [PRO] 0:484 [A] T:90 [PRO] 0:484 [A] ✔
T:90 [PRO] 0:485 [A] T:90 [PRO] 0:485 [A] ✔
T:13 [ARG] 0:31 [C] T:13 [ARG] 0:31 [C] ✔
T:13 [ARG] 0:32 [G] T:13 [ARG] 0:32 [G] ✔
T:9 [LYS] 0:31 [C] T:9 [LYS] 0:31 [C] ✔
T:9 [LYS] 0:32 [G] T:9 [LYS] 0:32 [G] ✔
T:39 [ASN] 0:343 [C] T:39 [ASN] 0:343 [C] ✔
T:39 [ASN] 0:344 [C] T:39 [ASN] 0:344 [C] ✔
T:93 [THR] 0:342 [C] T:93 [THR] 0:342 [C] ✔
T:44 [ALA] 0:80 [A] T:44 [ALA] 0:80 [A] ✔
T:44 [ALA] 0:81 [G] T:44 [ALA] 0:81 [G] ✔
T:88 [PRO] 0:484 [A] T:88 [PRO] 0:484 [A] ✔
T:106 [GLU] 0:97 [G] T:106 [GLU] 0:97 [G] ✔
T:68 [ASP] 0:82 [C] T:68 [ASP] 0:82 [C] ✔
T:68 [ASP] 0:85 [C] T:68 [ASP] 0:85 [C] ✔
T:68 [ASP] 0:87 [C] T:68 [ASP] 0:87 [C] ✔
T:8 [ARG] 0:30 [U] T:8 [ARG] 0:30 [U] ✔
T:8 [ARG] 0:31 [C] T:8 [ARG] 0:31 [C] ✔
T:8 [ARG] 0:333 [G] T:8 [ARG] 0:333 [G] ✔
T:8 [ARG] 0:334 [G] T:8 [ARG] 0:334 [G] ✔
T:111 [ARG] 0:79 [G] T:111 [ARG] 0:79 [G] ✔
T:111 [ARG] 0:80 [A] T:111 [ARG] 0:80 [A] ✔
T:3 [GLN] 0:332 [G] T:3 [GLN] 0:332 [G] ✔
T:3 [GLN] 0:447 [A] T:3 [GLN] 0:447 [A] ✔
T:3 [GLN] 0:448 [G] T:3 [GLN] 0:448 [G] ✔
T:26 [THR] 0:342 [C] T:26 [THR] 0:342 [C] ✔
T:26 [THR] 0:343 [C] T:26 [THR] 0:343 [C] ✔
T:87 [VAL] 0:486 [A] T:87 [VAL] 0:486 [A] ✔
T:38 [ARG] 0:305 [A] T:38 [ARG] 0:305 [A] ✔
T:38 [ARG] 0:306 [A] T:38 [ARG] 0:306 [A] ✔
T:38 [ARG] 0:307 [G] T:38 [ARG] 0:307 [G] ✔
T:38 [ARG] 0:308 [U] T:38 [ARG] 0:308 [U] ✔
T:38 [ARG] 0:341 [C] T:38 [ARG] 0:341 [C] ✔
T:38 [ARG] 0:342 [C] T:38 [ARG] 0:342 [C] ✔
T:38 [ARG] 0:343 [C] T:38 [ARG] 0:343 [C] ✔
T:51 [LEU] 0:308 [U] T:51 [LEU] 0:308 [U] ✔
T:51 [LEU] 0:309 [C] T:51 [LEU] 0:309 [C] ✔
T:51 [LEU] 0:317 [A] T:51 [LEU] 0:317 [A] ✔
T:80 [GLU] 0:486 [A] T:80 [GLU] 0:486 [A] ✔
T:92 [ASP] 0:334 [G] T:92 [ASP] 0:334 [G] ✔
T:92 [ASP] 0:335 [U] T:92 [ASP] 0:335 [U] ✔
T:92 [ASP] 0:336 [G] T:92 [ASP] 0:336 [G] ✔
T:52 [ARG] 0:308 [U] T:52 [ARG] 0:308 [U] ✔
T:52 [ARG] 0:316 [A] T:52 [ARG] 0:316 [A] ✔
T:52 [ARG] 0:317 [A] T:52 [ARG] 0:317 [A] ✔
T:52 [ARG] 0:318 [C] T:52 [ARG] 0:318 [U] ✔
T:5 [ASP] 0:30 [U] T:5 [ASP] 0:30 [U] ✔
T:5 [ASP] 0:31 [C] T:5 [ASP] 0:31 [C] ✔
T:5 [ASP] 0:32 [G] T:5 [ASP] 0:32 [G] ✔
T:5 [ASP] 0:452 [G] T:5 [ASP] 0:452 [G] ✔
T:82 [THR] 0:486 [A] T:82 [THR] 0:486 [A] ✔
T:82 [THR] 0:487 [G] T:82 [THR] 0:487 [G] ✔
T:82 [THR] 0:488 [U] T:82 [THR] 0:488 [U] ✔
T:82 [THR] 0:489 [A] T:82 [THR] 0:489 [A] ✔
T:82 [THR] 0:503 [G] T:82 [THR] 0:503 [G] ✔
T:82 [THR] 0:504 [G] T:82 [THR] 0:504 [G] ✔
T:42 [VAL] 0:81 [G] T:42 [VAL] 0:81 [G] ✔
T:89 [ARG] 0:336 [G] T:89 [ARG] 0:336 [G] ✔
T:89 [ARG] 0:483 [C] T:89 [ARG] 0:483 [C] ✔
T:89 [ARG] 0:484 [A] T:89 [ARG] 0:484 [A] ✔
T:107 [LYS] 0:79 [G] T:107 [LYS] 0:79 [G] ✔
T:107 [LYS] 0:97 [G] T:107 [LYS] 0:97 [G] ✔
T:7 [GLN] 0:331 [A] T:7 [GLN] 0:331 [A] ✔
T:7 [GLN] 0:332 [G] T:7 [GLN] 0:332 [G] ✔
T:7 [GLN] 0:333 [G] T:7 [GLN] 0:333 [G] ✔
T:7 [GLN] 0:344 [C] T:7 [GLN] 0:344 [C] ✔
T:12 [ARG] 0:31 [C] T:12 [ARG] 0:31 [C] ✔
T:105 [ASP] 0:80 [A] T:105 [ASP] 0:80 [A] ✔
T:105 [ASP] 0:95 [A] T:105 [ASP] 0:95 [A] ✔
T:105 [ASP] 0:97 [G] T:105 [ASP] 0:97 [G] ✔
T:17 [HIS] 0:77 [G] T:17 [HIS] 0:77 [G] ✔
T:17 [HIS] 0:78 [G] T:17 [HIS] 0:78 [G] ✔
T:17 [HIS] 0:99 [A] T:17 [HIS] 0:99 [A] ✔
T:17 [HIS] 0:100 [C] T:17 [HIS] 0:100 [C] ✔
T:17 [HIS] 0:101 [C] T:17 [HIS] 0:101 [C] ✔
T:55 [PHE] 0:336 [G] T:55 [PHE] 0:336 [G] ✔
T:54 [ASP] 0:315 [G] T:54 [ASP] 0:315 [G] ✔
T:54 [ASP] 0:316 [A] T:54 [ASP] 0:316 [A] ✔
T:54 [ASP] 0:336 [G] T:54 [ASP] 0:336 [G] ✔
T:54 [ASP] 0:483 [C] T:54 [ASP] 0:483 [C] ✔
T:54 [ASP] 0:507 [A] T:54 [ASP] 0:507 [A] ✔
T:16 [LEU] 0:82 [C] T:16 [LEU] 0:82 [C] ✔
T:16 [LEU] 0:83 [C] T:16 [LEU] 0:83 [C] ✔
T:16 [LEU] 0:99 [A] T:16 [LEU] 0:99 [A] ✔
T:16 [LEU] 0:100 [C] T:16 [LEU] 0:100 [C] ✔
T:1 [SER] 0:331 [A] T:1 [SER] 0:331 [A] ✔
T:1 [SER] 0:332 [G] T:1 [SER] 0:332 [G] ✔
T:1 [SER] 0:446 [G] T:1 [SER] 0:446 [G] ✔
T:1 [SER] 0:447 [A] T:1 [SER] 0:447 [A] ✔
T:18 [GLU] 0:100 [C] T:18 [GLU] 0:100 [C] ❌ 1YHQ_T_0
T:107 [LYS] 0:78 [G] T:107 [LYS] 0:78 [G] ❌ 1YHQ_T_0
T:7 [GLN] 0:345 [G] T:7 [GLN] 0:345 [G] ❌ 1YHQ_T_0
T:12 [ARG] 0:30 [U] T:12 [ARG] 0:30 [U] ❌ 1YHQ_T_0
T:2 [LYS] 0:446 [G] T:2 [LYS] 0:446 [G] ❌ 1VQ8_T_0
T:69 [LYS] 0:485 [A] T:69 [LYS] 0:485 [A] ❌ 1VQ8_T_0
T:68 [ASP] 0:84 [G] T:68 [ASP] 0:84 [G] ❌ 1YHQ_0:84 no longer at interface
T:115 [GLU] 0:304 [G] T:115 [GLU] 0:304 [G] ❌ 1VQ8_T:115 no longer at interface
T:22 [GLN] 0:343 [C] T:22 [GLN] 0:343 [C] ❌ 1VQ8_T:22 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
SH3 Archaeal large subunit ribosomal RNA 1.0 0.19 0.96 1.0 1.0 1.0 1.0 0.99 0.99 0.87 0.33


Other pairs involving 1VQ8_T_0 or 1YHQ_T_0

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_T_0 1YHQ_T_0 0.99 1.0 0.19 0.96 SH3 Archaeal large subunit ribosomal RNA compare
1YHQ_T_0 6AZ3_W_1 0.78 0.77 1.71 0.32 SH3 compare
1VQ8_T_0 6AZ3_W_1 0.77 0.77 1.62 0.32 SH3 compare
1YHQ_T_0 6AZ3_W_7 0.61 0.79 1.55 0.2 SH3 compare
1VQ8_T_0 6AZ3_W_7 0.61 0.79 1.61 0.2 SH3 compare
1YHQ_T_0 7O7Y_BY_B5 0.75 0.94 2.32 0.23 SH3 compare
1VQ8_T_0 7O7Y_BY_B5 0.72 0.94 2.13 0.23 SH3 compare
1YHQ_T_0 7O7Y_BY_B8 0.65 0.79 1.17 0.29 SH3 compare
1VQ8_T_0 7O7Y_BY_B8 0.67 0.79 1.22 0.29 SH3 compare