RNAprotDB

All interfaces > All interologs > Interface groups > group91 > 1VQ8_T_0 vs 7O7Y_BY_B8

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1VQ8_T
1VQ8_0
7O7Y_BY
7O7Y_B8
Conserved?
T:66 [ASP] 0:82 [C] BY:74 [TYR] B8:73 [U] ✔
T:65 [VAL] 0:81 [G] BY:73 [VAL] B8:72 [A] ✔
T:65 [VAL] 0:82 [C] BY:73 [VAL] B8:73 [U] ✔
T:4 [PRO] 0:31 [C] BY:11 [ARG] B8:23 [C] ✔
T:20 [HIS] 0:79 [G] BY:27 [ARG] B8:70 [G] ✔
T:20 [HIS] 0:80 [A] BY:27 [ARG] B8:71 [A] ✔
T:108 [ARG] 0:80 [A] BY:115 [ARG] B8:71 [A] ✔
T:43 [ASN] 0:80 [A] BY:50 [ARG] B8:71 [A] ✔
T:43 [ASN] 0:81 [G] BY:50 [ARG] B8:72 [A] ✔
T:15 [PRO] 0:100 [C] BY:22 [PRO] B8:90 [C] ✔
T:15 [PRO] 0:101 [C] BY:22 [PRO] B8:91 [A] ✔
T:67 [LEU] 0:81 [G] BY:75 [ARG] B8:72 [A] ✔
T:67 [LEU] 0:82 [C] BY:75 [ARG] B8:73 [U] ✔
T:67 [LEU] 0:99 [A] BY:75 [ARG] B8:89 [U] ✔
T:13 [ARG] 0:31 [C] BY:20 [ASN] B8:23 [C] ✔
T:9 [LYS] 0:31 [C] BY:16 [LYS] B8:23 [C] ✔
T:9 [LYS] 0:32 [G] BY:16 [LYS] B8:24 [G] ✔
T:44 [ALA] 0:80 [A] BY:51 [LYS] B8:71 [A] ✔
T:44 [ALA] 0:81 [G] BY:51 [LYS] B8:72 [A] ✔
T:106 [GLU] 0:97 [G] BY:113 [LYS] B8:87 [G] ✔
T:68 [ASP] 0:82 [C] BY:76 [LYS] B8:73 [U] ✔
T:68 [ASP] 0:87 [C] BY:76 [LYS] B8:74 [U] ✔
T:8 [ARG] 0:30 [U] BY:15 [ARG] B8:22 [U] ✔
T:8 [ARG] 0:31 [C] BY:15 [ARG] B8:23 [C] ✔
T:111 [ARG] 0:79 [G] BY:118 [ILE] B8:70 [G] ✔
T:5 [ASP] 0:30 [U] BY:12 [SER] B8:22 [U] ✔
T:5 [ASP] 0:31 [C] BY:12 [SER] B8:23 [C] ✔
T:5 [ASP] 0:32 [G] BY:12 [SER] B8:24 [G] ✔
T:42 [VAL] 0:81 [G] BY:49 [ILE] B8:72 [A] ✔
T:107 [LYS] 0:79 [G] BY:114 [ASP] B8:70 [G] ✔
T:107 [LYS] 0:97 [G] BY:114 [ASP] B8:87 [G] ✔
T:12 [ARG] 0:31 [C] BY:19 [PHE] B8:23 [C] ✔
T:105 [ASP] 0:80 [A] BY:112 [ASP] B8:71 [A] ✔
T:105 [ASP] 0:95 [A] BY:112 [ASP] B8:85 [U] ✔
T:17 [HIS] 0:77 [G] BY:24 [HIS] B8:68 [G] ✔
T:17 [HIS] 0:78 [G] BY:24 [HIS] B8:69 [PSU] ✔
T:17 [HIS] 0:100 [C] BY:24 [HIS] B8:90 [C] ✔
T:17 [HIS] 0:101 [C] BY:24 [HIS] B8:91 [A] ✔
T:16 [LEU] 0:82 [C] BY:23 [SER] B8:73 [U] ✔
T:16 [LEU] 0:99 [A] BY:23 [SER] B8:89 [U] ✔
T:16 [LEU] 0:100 [C] BY:23 [SER] B8:90 [C] ✔
T:20 [HIS] 0:78 [G] BY:27 [ARG] B8:69 [PSU] ❌ 7O7Y_BY_B8
T:20 [HIS] 0:99 [A] BY:27 [ARG] B8:89 [U] ❌ 7O7Y_BY_B8
T:13 [ARG] 0:32 [G] BY:20 [ASN] B8:24 [G] ❌ 7O7Y_BY_B8
T:111 [ARG] 0:80 [A] BY:118 [ILE] B8:71 [A] ❌ 7O7Y_BY_B8
T:107 [LYS] 0:78 [G] BY:114 [ASP] B8:69 [PSU] ❌ 7O7Y_BY_B8
T:12 [ARG] 0:30 [U] BY:19 [PHE] B8:22 [U] ❌ 7O7Y_BY_B8
T:105 [ASP] 0:97 [G] BY:112 [ASP] B8:87 [G] ❌ 7O7Y_BY_B8
T:17 [HIS] 0:99 [A] BY:24 [HIS] B8:89 [U] ❌ 7O7Y_BY_B8
T:4 [PRO] 0:30 [U] BY:11 [ARG] B8:22 [U] ❌ 1VQ8_T_0
T:105 [ASP] 0:79 [G] BY:112 [ASP] B8:70 [G] ❌ 1VQ8_T_0
T:106 [GLU] 0:95 [A] BY:113 [LYS] B8:85 [U] ❌ 1VQ8_T_0
T:107 [LYS] 0:80 [A] BY:114 [ASP] B8:71 [A] ❌ 1VQ8_T_0
T:107 [LYS] 0:95 [A] BY:114 [ASP] B8:85 [U] ❌ 1VQ8_T_0
T:16 [LEU] 0:81 [G] BY:23 [SER] B8:72 [A] ❌ 1VQ8_T_0
T:43 [ASN] 0:95 [A] BY:50 [ARG] B8:85 [U] ❌ 1VQ8_T_0
T:65 [VAL] 0:87 [C] BY:73 [VAL] B8:74 [U] ❌ 1VQ8_T_0
T:66 [ASP] 0:87 [C] BY:74 [TYR] B8:74 [U] ❌ 1VQ8_T_0
T:67 [LEU] 0:80 [A] BY:75 [ARG] B8:71 [A] ❌ 1VQ8_T_0
T:4 [PRO] 0:29 [C] BY:11 [ARG] B8:21 [C] ❌ 1VQ8_0:29 no longer at interface
T:106 [GLU] 0:96 [A] BY:113 [LYS] B8:86 [U] ❌ 1VQ8_0:96 no longer at interface
T:66 [ASP] 0:89 [G] BY:74 [TYR] B8:76 [C] ❌ 1VQ8_0:89 no longer at interface
T:66 [ASP] 0:88 [G] BY:74 [TYR] B8:75 [OMG] ❌ 1VQ8_0:88 no longer at interface
T:68 [ASP] 0:88 [G] BY:76 [LYS] B8:75 [OMG] ❌ 1VQ8_0:88 no longer at interface
T:18 [GLU] 0:100 [C] BY:25 [ILE] B8:90 [C] ❌ 7O7Y_BY:25 no longer at interface
T:41 [ARG] 0:79 [G] BY:48 [PRO] B8:70 [G] ❌ 7O7Y_BY:48 no longer at interface
T:41 [ARG] 0:80 [A] BY:48 [PRO] B8:71 [A] ❌ 7O7Y_BY:48 no longer at interface
T:41 [ARG] 0:81 [G] BY:48 [PRO] B8:72 [A] ❌ 7O7Y_BY:48 no longer at interface
T:118 [SER] 0:79 [G] BY:126 [ARG] B8:70 [G] ❌ 7O7Y_BY:126 no longer at interface
T:69 [LYS] 0:87 [C] BY:77 [LYS] B8:74 [U] ❌ 7O7Y_BY:77 no longer at interface
T:117 [ASP] 0:78 [G] BY:125 [SER] B8:69 [PSU] ❌ 7O7Y_BY:125 no longer at interface
T:110 [ALA] 0:79 [G] BY:117 [LYS] B8:70 [G] ❌ 1VQ8_T:110 no longer at interface
T:64 [ASN] 0:87 [C] BY:72 [GLN] B8:74 [U] ❌ 1VQ8_T:64 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
SH3 0.79 1.22 0.29 0.9 0.7 0.92 0.79 0.67 0.59 0.31 0.44


Other pairs involving 1VQ8_T_0 or 7O7Y_BY_B8

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_T_0 7O7Y_BY_B8 0.65 0.79 1.17 0.29 SH3 compare
6AZ3_W_7 7O7Y_BY_B8 0.88 0.91 0.76 0.54 SH3 5.8S ribosomal RNA compare
1VQ8_T_0 6AZ3_W_1 0.77 0.77 1.62 0.32 SH3 compare
1VQ8_T_0 7O7Y_BY_B5 0.72 0.94 2.13 0.23 SH3 compare
1VQ8_T_0 7O7Y_BY_B8 0.67 0.79 1.22 0.29 SH3 compare
1VQ8_T_0 6AZ3_W_7 0.61 0.79 1.61 0.2 SH3 compare
1VQ8_T_0 1YHQ_T_0 0.99 1.0 0.19 0.96 SH3 Archaeal large subunit ribosomal RNA compare