RNAprotDB

All interfaces > All interologs > Interface groups > group91 > 7O7Y_BY_B5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_BY
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BY:1 [MET] B5:225 [G] 4.07 B5:242 [U] 82.83
BY:1 [MET] B5:226 [G] 2.57 B5:222 [C] 82.83
BY:1 [MET] B5:227 [A] 3.44 B5:241 [G] 82.83
BY:1 [MET] B5:242 [U] 3.62 B5:225 [G] 82.83
BY:1 [MET] B5:243 [A] 3.25 82.83
BY:1 [MET] B5:1312 [A] 3.65 82.83
BY:2 [LYS] B5:226 [G] 4.2 B5:222 [C] 79.43
BY:2 [LYS] B5:227 [A] 3.56 B5:241 [G] sugar:BB 79.43
BY:2 [LYS] B5:242 [U] 3.24 B5:225 [G] 79.43
BY:2 [LYS] B5:243 [A] 3.53 79.43
BY:2 [LYS] B5:346 [G] 4.76 B8:28 [C] 79.43
BY:2 [LYS] B5:347 [A] 3.73 B8:27 [U] 79.43
BY:2 [LYS] B5:1312 [A] 3.07 sugar:BB 79.43
BY:3 [PHE] B5:225 [G] 4.57 B5:242 [U] 29.94
BY:3 [PHE] B5:242 [U] 4.06 B5:225 [G] 29.94
BY:3 [PHE] B5:243 [A] 2.76 29.94
BY:3 [PHE] B5:244 [G] 4.21 B5:196 [C] 29.94
BY:3 [PHE] B5:1312 [A] 3.49 29.94
BY:4 [ASN] B5:242 [U] 4.92 B5:225 [G] 67.47
BY:4 [ASN] B5:243 [A] 2.78 67.47
BY:5 [PRO] B5:345 [C] 4.83 B8:29 [G] 51.46
BY:5 [PRO] B5:346 [G] 3.23 B8:28 [C] 51.46
BY:5 [PRO] B5:1311 [C] 3.71 51.46
BY:6 [PHE] B5:345 [C] 4.06 B8:29 [G] 30.31
BY:6 [PHE] B5:346 [G] 4.01 B8:28 [C] 30.31
BY:7 [VAL] B5:227 [A] 4.4 B5:241 [G] 42.58
BY:7 [VAL] B5:242 [U] 3.73 B5:225 [G] 42.58
BY:7 [VAL] B5:346 [G] 4.43 B8:28 [C] 42.58
BY:7 [VAL] B5:347 [A] 4.31 B8:27 [U] 42.58
BY:8 [THR] B5:227 [A] 3.62 B5:241 [G] 90.44
BY:8 [THR] B5:346 [G] 3.22 B8:28 [C] 90.44
BY:8 [THR] B5:347 [A] 2.51 B8:27 [U] 90.44
BY:9 [SER] B5:227 [A] 3.51 B5:241 [G] 54.04
BY:9 [SER] B5:228 [C] 3.27 B5:240 [G] 54.04
BY:9 [SER] B5:346 [G] 4.9 B8:28 [C] 54.04
BY:9 [SER] B5:347 [A] 3.13 B8:27 [U] 54.04
BY:10 [ASP] B5:228 [C] 3.99 B5:240 [G] 70.57
BY:10 [ASP] B5:347 [A] 3.93 B8:27 [U] 70.57
BY:11 [ARG] B5:228 [C] 4.47 B5:240 [G] 86.21
BY:11 [ARG] B5:229 [G] 2.7 B5:239 [C] 86.21
BY:11 [ARG] B5:230 [G] 4.13 B5:238 [C] 86.21
BY:13 [LYS] B5:346 [G] 2.94 B8:28 [C] 90.32
BY:13 [LYS] B5:347 [A] 4.22 B8:27 [U] 90.32
BY:14 [ASN] B5:227 [A] 4.88 B5:241 [G] 80.2
BY:14 [ASN] B5:228 [C] 2.48 B5:240 [G] sugar:SC 80.2
BY:14 [ASN] B5:229 [G] 3.64 B5:239 [C] 80.2
BY:15 [ARG] B5:229 [G] 3.21 B5:239 [C] 98.8
BY:15 [ARG] B5:230 [G] 2.67 B5:238 [C] 98.8
BY:17 [ARG] B5:345 [C] 4.57 B8:29 [G] 14.1
BY:17 [ARG] B5:346 [G] 3.03 B8:28 [C] 14.1
BY:18 [HIS] B5:229 [G] 4.18 B5:239 [C] 26.84
BY:18 [HIS] B5:230 [G] 3.12 B5:238 [C] sugar:SC 26.84
BY:19 [PHE] B5:230 [G] 4.2 B5:238 [C] 40.74
BY:19 [PHE] B5:231 [U] 4.34 40.74
BY:24 [HIS] B5:194 [C] 4.31 B5:247 [G] 87.09
BY:27 [ARG] B5:195 [C] 4.37 B5:246 [G] 44.12
BY:28 [LYS] B5:195 [C] 3.29 B5:246 [G] 67.01
BY:28 [LYS] B5:196 [C] 4.35 B5:244 [G] 67.01
BY:28 [LYS] B5:239 [C] 4.08 B5:229 [G] 67.01
BY:28 [LYS] B5:240 [G] 3.36 B5:228 [C] 67.01
BY:28 [LYS] B5:241 [G] 3.22 B5:227 [A] 67.01
BY:29 [ILE] B5:239 [C] 3.07 B5:229 [G] sugar:BB 5.63
BY:29 [ILE] B5:240 [G] 4.3 B5:228 [C] 5.63
BY:30 [MET] B5:239 [C] 4.98 B5:229 [G] 61.41
BY:31 [SER] B5:239 [C] 3.3 B5:229 [G] 68.4
BY:31 [SER] B5:240 [G] 3.96 B5:228 [C] 68.4
BY:32 [SER] B5:239 [C] 4.07 B5:229 [G] 71.05
BY:33 [PRO] B5:238 [C] 3.28 B5:230 [G] 66.55
BY:33 [PRO] B5:239 [C] 3.23 B5:229 [G] 66.55
BY:36 [LYS] B5:199 [G] 4.81 B5:215 [C] 58.39
BY:36 [LYS] B5:200 [U] 2.56 B5:235 [A] 58.39
BY:39 [ARG] B5:199 [G] 3.2 B5:215 [C] 68.8
BY:39 [ARG] B5:200 [U] 3.3 B5:235 [A] 68.8
BY:45 [ARG] B5:198 [A] 3.58 86.92
BY:45 [ARG] B5:199 [G] 2.89 B5:215 [C] 86.92
BY:45 [ARG] B5:200 [U] 4.08 B5:235 [A] 86.92
BY:45 [ARG] B5:237 [G] 3.36 B5:220 [C] 86.92
BY:45 [ARG] B5:238 [C] 2.64 B5:230 [G] 86.92
BY:45 [ARG] B5:239 [C] 3.24 B5:229 [G] 86.92
BY:46 [SER] B5:196 [C] 4.78 B5:244 [G] 78.21
BY:46 [SER] B5:238 [C] 4.66 B5:230 [G] 78.21
BY:46 [SER] B5:239 [C] 2.38 B5:229 [G] 78.21
BY:46 [SER] B5:240 [G] 3.47 B5:228 [C] 78.21
BY:58 [VAL] B5:200 [U] 4.05 B5:235 [A] 58.27
BY:59 [ARG] B5:200 [U] 2.82 B5:235 [A] sugar:SC, sugar:SC base/AA stacks 81.54
BY:59 [ARG] B5:208 [A] 4.88 81.54
BY:59 [ARG] B5:209 [U] 3.88 B5:205 [C] 81.54
BY:59 [ARG] B5:210 [C] 2.69 81.54
BY:60 [GLY] B5:208 [A] 3.65 98.95
BY:60 [GLY] B5:209 [U] 3.44 B5:205 [C] 98.95
BY:60 [GLY] B5:232 [G] 3.56 B5:207 [G] 98.95
BY:61 [HIS] B5:208 [A] 4.53 48.09
BY:61 [HIS] B5:232 [G] 2.69 B5:207 [G] base:BB 48.09
BY:62 [TYR] B5:232 [G] 4.73 B5:207 [G] 48.87
BY:63 [LYS] B5:206 [U] 4.79 71.74
BY:63 [LYS] B5:209 [U] 2.98 B5:205 [C] 71.74
BY:77 [LYS] B5:385 [A] 4.53 B5:381 [U] 44.56
BY:87 [ARG] B5:384 [A] 3.8 33.43
BY:87 [ARG] B5:386 [A] 3.12 B5:382 [G] 33.43
BY:87 [ARG] B5:404 [U] 2.77 B5:408 [A] sugar:SC 33.43
BY:87 [ARG] B5:405 [U] 3.55 B5:410 [A] 33.43
BY:88 [GLU] B5:386 [A] 4.03 B5:382 [G] 59.28
BY:89 [LYS] B5:385 [A] 3.92 B5:381 [U] 80.68
BY:89 [LYS] B5:386 [A] 2.47 B5:382 [G] 80.68
BY:89 [LYS] B5:387 [G] 2.83 B5:414 [C] 80.68
BY:90 [ALA] B5:386 [A] 4.43 B5:382 [G] 63.09
BY:90 [ALA] B5:387 [G] 3.71 B5:414 [C] 63.09
BY:90 [ALA] B5:388 [A] 3.77 B5:402 [A] 63.09
BY:90 [ALA] B5:389 [A] 3.21 63.09
BY:91 [ASN] B5:389 [A] 3.34 sugar:BB 71.53
BY:95 [VAL] B5:386 [A] 3.61 B5:382 [G] 35.81
BY:97 [VAL] B5:384 [A] 4.22 62.39
BY:98 [GLY] B5:384 [A] 4.76 56.81
BY:100 [HIS] B5:230 [G] 3.88 B5:238 [C] 63.91
BY:100 [HIS] B5:231 [U] 3.4 63.91
BY:100 [HIS] B5:232 [G] 4.58 B5:207 [G] 63.91
BY:102 [SER] B5:200 [U] 3.9 B5:235 [A] 97.33
BY:102 [SER] B5:230 [G] 3.45 B5:238 [C] 97.33
BY:102 [SER] B5:231 [U] 3.05 sugar:SC 97.33
BY:102 [SER] B5:238 [C] 2.76 B5:230 [G] sugar:BB 97.33
BY:102 [SER] B5:239 [C] 3.79 B5:229 [G] 97.33
BY:103 [LYS] B5:200 [U] 3.12 B5:235 [A] base:SC 91.08
BY:103 [LYS] B5:210 [C] 4.96 91.08
BY:103 [LYS] B5:230 [G] 4.38 B5:238 [C] 91.08
BY:103 [LYS] B5:231 [U] 2.88 base:SC, sugar:SC 91.08
BY:103 [LYS] B5:232 [G] 3.35 B5:207 [G] 91.08
BY:103 [LYS] B5:235 [A] 3.44 B5:200 [U] 91.08
BY:103 [LYS] B5:238 [C] 3.28 B5:230 [G] base:SC 91.08
BY:121 [ARG] B5:193 [G] 4.12 B5:248 [C] 53.83
BY:121 [ARG] B5:194 [C] 2.89 B5:247 [G] base:SC, sugar:SC 53.83
BY:121 [ARG] B5:195 [C] 3.51 B5:246 [G] 53.83
BY:121 [ARG] B5:247 [G] 3.4 B5:194 [C] 53.83
BY:121 [ARG] B5:248 [C] 3.55 B5:193 [G] base:SC 53.83
BY:122 [LYS] B5:195 [C] 3.4 B5:246 [G] 56.34
BY:122 [LYS] B5:196 [C] 3.66 B5:244 [G] 56.34
BY:122 [LYS] B5:240 [G] 4.54 B5:228 [C] 56.34
BY:124 [LYS] B5:247 [G] 4.71 B5:194 [C] 33.24
BY:124 [LYS] B5:248 [C] 4.18 B5:193 [G] 33.24
BY:125 [SER] B5:195 [C] 3.02 B5:246 [G] base:SC, sugar:SC 1.5
BY:125 [SER] B5:196 [C] 3.23 B5:244 [G] 1.5
BY:125 [SER] B5:246 [G] 4.4 B5:195 [C] 1.5
BY:125 [SER] B5:247 [G] 4.3 B5:194 [C] 1.5
BY:126 [ARG] B5:196 [C] 3.41 B5:244 [G] 3.74
BY:126 [ARG] B5:197 [A] 3.56 3.74
BY:126 [ARG] B5:198 [A] 2.26 3.74
BY:128 [VAL] B5:246 [G] 4.42 B5:195 [C] 6.05
BY:128 [VAL] B5:247 [G] 3.82 B5:194 [C] 6.05
BY:129 [GLY] B5:196 [C] 4.46 B5:244 [G] 51.08
BY:130 [LYS] B5:197 [A] 3.73 42.52
BY:130 [LYS] B5:198 [A] 4.13 42.52
BY:132 [LYS] B5:246 [G] 3.23 B5:195 [C] 28.32

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group91 7O7Y_BY_B5 BY: Ribosomal protein l26, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SQH0 SH3 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_W_1 7O7Y_BY_B5 0.79 0.92 1.63 0.54 SH3 Eukaryotic large subunit ribosomal RNA compare
1VQ8_T_0 7O7Y_BY_B5 0.72 0.94 2.13 0.23 SH3 compare
1YHQ_T_0 7O7Y_BY_B5 0.75 0.94 2.32 0.23 SH3 compare