Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7O7Y_BY
|
7O7Y_B8
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| BY:11 [ARG] | B8:21 [C] | 4.85 | B5:379 [G] | 86.2 | ||
| BY:11 [ARG] | B8:22 [U] | 2.81 | B5:353 [A] | 86.2 | ||
| BY:11 [ARG] | B8:23 [C] | 4.69 | 86.2 | |||
| BY:12 [SER] | B8:22 [U] | 4.6 | B5:353 [A] | 73.9 | ||
| BY:12 [SER] | B8:23 [C] | 3.92 | 73.9 | |||
| BY:12 [SER] | B8:24 [G] | 4.78 | B5:351 [C] | 73.9 | ||
| BY:15 [ARG] | B8:22 [U] | 4.39 | B5:353 [A] | 98.8 | ||
| BY:15 [ARG] | B8:23 [C] | 2.46 | 98.8 | |||
| BY:16 [LYS] | B8:23 [C] | 3.27 | 78.4 | |||
| BY:16 [LYS] | B8:24 [G] | 2.66 | B5:351 [C] | 78.4 | ||
| BY:19 [PHE] | B8:23 [C] | 3.53 | base/AA stacks | 40.7 | ||
| BY:20 [ASN] | B8:23 [C] | 2.94 | base:SC | 59.1 | ||
| BY:22 [PRO] | B8:90 [C] | 3.22 | B8:68 [G] | 69.0 | ||
| BY:22 [PRO] | B8:91 [A] | 3.62 | B8:67 [U] | 69.0 | ||
| BY:23 [SER] | B8:72 [A] | 3.52 | 31.2 | |||
| BY:23 [SER] | B8:73 [U] | 2.82 | 31.2 | |||
| BY:23 [SER] | B8:89 [U] | 3.38 | B8:69 [PSU] | sugar:SC | 31.2 | |
| BY:23 [SER] | B8:90 [C] | 3.59 | B8:68 [G] | 31.2 | ||
| BY:24 [HIS] | B8:68 [G] | 4.81 | B8:90 [C] | 87.0 | ||
| BY:24 [HIS] | B8:69 [PSU] | 4.7 | B8:89 [U] | 87.0 | ||
| BY:24 [HIS] | B8:90 [C] | 2.52 | B8:68 [G] | sugar:SC | 87.0 | |
| BY:24 [HIS] | B8:91 [A] | 3.08 | B8:67 [U] | 87.0 | ||
| BY:27 [ARG] | B8:70 [G] | 3.53 | B8:88 [A] | 44.1 | ||
| BY:27 [ARG] | B8:71 [A] | 2.71 | B8:87 [G] | 44.1 | ||
| BY:49 [ILE] | B8:72 [A] | 4.58 | 79.2 | |||
| BY:50 [ARG] | B8:71 [A] | 3.16 | B8:87 [G] | 80.3 | ||
| BY:50 [ARG] | B8:72 [A] | 3.63 | 80.3 | |||
| BY:50 [ARG] | B8:85 [U] | 2.67 | base:SC | 80.3 | ||
| BY:51 [LYS] | B8:71 [A] | 4.54 | B8:87 [G] | 74.1 | ||
| BY:51 [LYS] | B8:72 [A] | 2.84 | 74.1 | |||
| BY:72 [GLN] | B8:74 [U] | 2.87 | base:SC | 39.8 | ||
| BY:73 [VAL] | B8:72 [A] | 3.32 | 88.8 | |||
| BY:73 [VAL] | B8:73 [U] | 3.26 | 88.8 | |||
| BY:73 [VAL] | B8:74 [U] | 3.87 | 88.8 | |||
| BY:74 [TYR] | B8:73 [U] | 4.45 | 69.8 | |||
| BY:74 [TYR] | B8:74 [U] | 3.51 | base/AA stacks | 69.8 | ||
| BY:74 [TYR] | B8:75 [OMG] | 2.3 | B8:50 [C] | 69.8 | ||
| BY:74 [TYR] | B8:76 [C] | 4.86 | B8:49 [G] | 69.8 | ||
| BY:75 [ARG] | B8:71 [A] | 3.4 | B8:87 [G] | 33.9 | ||
| BY:75 [ARG] | B8:72 [A] | 3.31 | 33.9 | |||
| BY:75 [ARG] | B8:73 [U] | 3.23 | 33.9 | |||
| BY:75 [ARG] | B8:89 [U] | 4.88 | B8:69 [PSU] | 33.9 | ||
| BY:76 [LYS] | B8:73 [U] | 4.59 | 53.0 | |||
| BY:76 [LYS] | B8:74 [U] | 3.67 | 53.0 | |||
| BY:76 [LYS] | B8:75 [OMG] | 3.63 | B8:50 [C] | 53.0 | ||
| BY:112 [ASP] | B8:70 [G] | 4.41 | B8:88 [A] | 66.4 | ||
| BY:112 [ASP] | B8:71 [A] | 4.6 | B8:87 [G] | 66.4 | ||
| BY:112 [ASP] | B8:85 [U] | 3.78 | 66.4 | |||
| BY:113 [LYS] | B8:85 [U] | 4.75 | 47.4 | |||
| BY:113 [LYS] | B8:86 [U] | 3.19 | 47.4 | |||
| BY:113 [LYS] | B8:87 [G] | 4.95 | B8:71 [A] | 47.4 | ||
| BY:114 [ASP] | B8:70 [G] | 2.77 | B8:88 [A] | sugar:SC | base/AA stacks | 33.2 |
| BY:114 [ASP] | B8:71 [A] | 4.99 | B8:87 [G] | 33.2 | ||
| BY:114 [ASP] | B8:85 [U] | 4.8 | 33.2 | |||
| BY:114 [ASP] | B8:87 [G] | 2.71 | B8:71 [A] | base:SC, base:SC | 33.2 | |
| BY:115 [ARG] | B8:71 [A] | 4.19 | B8:87 [G] | 91.3 | ||
| BY:117 [LYS] | B8:70 [G] | 3.56 | B8:88 [A] | 22.8 | ||
| BY:118 [ILE] | B8:70 [G] | 3.48 | B8:88 [A] | 17.9 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group91 | 7O7Y_BY_B8 | BY: Ribosomal protein l26, Oryctolagus cuniculus (natural) B8: 5.8s rRNA, Oryctolagus cuniculus (natural) | G1SQH0 | SH3 | 5.8S ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1YHQ_T_0 | 7O7Y_BY_B8 | 0.65 | 0.79 | 1.17 | 0.29 | SH3 | compare | |
| 1VQ8_T_0 | 7O7Y_BY_B8 | 0.67 | 0.79 | 1.22 | 0.29 | SH3 | compare | |
| 6AZ3_W_7 | 7O7Y_BY_B8 | 0.88 | 0.91 | 0.76 | 0.54 | SH3 | 5.8S ribosomal RNA | compare |