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All interfaces > All interologs > Interface groups > group92 > 7O7Y_Ap_A2

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Ap
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Ap:7 [LEU] A2:1410 [A] 4.89 A2:1433 [U] 24.9
Ap:11 [GLN] A2:1398 [U] 2.93 base:BB 31.0
Ap:11 [GLN] A2:1408 [U] 2.64 A2:1440 [A] sugar:SC, sugar:SC 31.0
Ap:11 [GLN] A2:1409 [U] 3.47 A2:1439 [A] 31.0
Ap:11 [GLN] A2:1443 [OMU] 3.36 base/AA stacks 31.0
Ap:12 [VAL] A2:1398 [U] 3.19 62.89
Ap:12 [VAL] A2:1443 [OMU] 4.11 62.89
Ap:13 [PHE] A2:1397 [A] 3.22 A2:1450 [G] 42.8
Ap:13 [PHE] A2:1398 [U] 3.05 base:BB 42.8
Ap:13 [PHE] A2:1443 [OMU] 3.57 42.8
Ap:13 [PHE] A2:1444 [C] 3.75 42.8
Ap:15 [ARG] A2:1396 [C] 3.46 A2:1451 [G] 80.17
Ap:15 [ARG] A2:1444 [C] 4.17 80.17
Ap:15 [ARG] A2:1445 [U] 2.98 A2:1403 [A] 80.17
Ap:16 [LYS] A2:1649 [G] 4.1 93.52
Ap:17 [LYS] A2:1649 [G] 3.26 99.0
Ap:17 [LYS] A2:1673 [U] 3.42 A2:1653 [G] 99.0
Ap:17 [LYS] A2:1674 [U] 3.14 A2:1652 [A] 99.0
Ap:17 [LYS] A2:1675 [G] 2.41 A2:1651 [A] base:SC, base:SC 99.0
Ap:18 [THR] A2:1546 [A] 4.55 73.41
Ap:18 [THR] A2:1547 [G] 3.6 73.41
Ap:18 [THR] A2:1672 [G] 3.03 A2:1654 [U] 73.41
Ap:18 [THR] A2:1673 [U] 2.67 A2:1653 [G] 73.41
Ap:19 [ALA] A2:1673 [U] 4.6 A2:1653 [G] 86.13
Ap:20 [THR] A2:1444 [C] 3.91 56.69
Ap:20 [THR] A2:1445 [U] 3.96 A2:1403 [A] 56.69
Ap:22 [VAL] A2:1443 [OMU] 3.64 66.05
Ap:22 [VAL] A2:1444 [C] 3.69 66.05
Ap:24 [HIS] A2:1409 [U] 3.47 A2:1439 [A] 12.31
Ap:24 [HIS] A2:1410 [A] 3.87 A2:1433 [U] 12.31
Ap:26 [LYS] A2:1410 [A] 3.69 A2:1433 [U] 33.36
Ap:31 [LEU] A2:1426 [G] 3.95 A2:1416 [C] 23.06
Ap:31 [LEU] A2:1427 [U] 4.72 A2:1415 [A] 23.06
Ap:33 [LYS] A2:1426 [G] 2.77 A2:1416 [C] 56.53
Ap:33 [LYS] A2:1427 [U] 3.22 A2:1415 [A] 56.53
Ap:35 [ASN] A2:1427 [U] 4.97 A2:1415 [A] 98.49
Ap:35 [ASN] A2:1428 [C] 3.53 A2:1414 [G] 98.49
Ap:35 [ASN] A2:1545 [C] 4.91 98.49
Ap:36 [GLY] A2:1427 [U] 3.81 A2:1415 [A] 57.36
Ap:36 [GLY] A2:1428 [C] 3.63 A2:1414 [G] 57.36
Ap:37 [ARG] A2:1543 [C] 4.43 39.71
Ap:37 [ARG] A2:1544 [U] 2.45 39.71
Ap:43 [GLU] A2:1543 [C] 3.72 54.56
Ap:43 [GLU] A2:1544 [U] 4.36 54.56
Ap:43 [GLU] A2:1593 [C] 3.7 A2:1542 [G] sugar:SC 54.56
Ap:44 [PRO] A2:1593 [C] 2.97 A2:1542 [G] sugar:BB 14.31
Ap:44 [PRO] A2:1594 [C] 4.8 A2:1541 [G] 14.31
Ap:45 [ARG] A2:1593 [C] 5.0 A2:1542 [G] 11.77
Ap:46 [THR] A2:1593 [C] 3.64 A2:1542 [G] 17.42
Ap:46 [THR] A2:1594 [C] 3.89 A2:1541 [G] 17.42
Ap:67 [ASP] A2:1426 [G] 4.62 A2:1416 [C] 78.54
Ap:69 [ARG] A2:1426 [G] 3.07 A2:1416 [C] 21.65
Ap:69 [ARG] A2:1427 [U] 3.1 A2:1415 [A] 21.65
Ap:71 [ARG] A2:1408 [U] 3.13 A2:1440 [A] 47.41
Ap:71 [ARG] A2:1409 [U] 3.42 A2:1439 [A] 47.41
Ap:71 [ARG] A2:1443 [OMU] 3.11 base:SC 47.41
Ap:71 [ARG] A2:1444 [C] 3.54 47.41
Ap:73 [LYS] A2:1429 [G] 3.87 base:SC 34.03
Ap:73 [LYS] A2:1545 [C] 4.77 34.03
Ap:73 [LYS] A2:1546 [A] 3.56 34.03
Ap:74 [GLY] A2:1545 [C] 3.38 98.52
Ap:74 [GLY] A2:1546 [A] 2.55 98.52
Ap:74 [GLY] A2:1547 [G] 4.14 98.52
Ap:75 [GLY] A2:1545 [C] 2.7 sugar:BB 90.87
Ap:75 [GLY] A2:1546 [A] 3.48 90.87
Ap:75 [GLY] A2:1673 [U] 3.65 A2:1653 [G] 90.87
Ap:75 [GLY] A2:1674 [U] 4.91 A2:1652 [A] 90.87
Ap:76 [GLY] A2:1545 [C] 3.39 96.01
Ap:76 [GLY] A2:1673 [U] 3.19 A2:1653 [G] 96.01
Ap:76 [GLY] A2:1674 [U] 3.34 A2:1652 [A] 96.01
Ap:77 [HIS] A2:1544 [U] 2.87 base:SC 1.36
Ap:77 [HIS] A2:1545 [C] 3.21 base/AA stacks 1.36
Ap:77 [HIS] A2:1591 [C] 3.52 1.36
Ap:77 [HIS] A2:1592 [C] 3.28 base:SC 1.36
Ap:77 [HIS] A2:1673 [U] 4.47 A2:1653 [G] 1.36
Ap:77 [HIS] A2:1674 [U] 3.78 A2:1652 [A] 1.36
Ap:78 [VAL] A2:1674 [U] 3.39 A2:1652 [A] 66.7
Ap:78 [VAL] A2:1675 [G] 3.28 A2:1651 [A] 66.7
Ap:79 [ALA] A2:1673 [U] 4.93 A2:1653 [G] 68.35
Ap:79 [ALA] A2:1674 [U] 2.78 A2:1652 [A] 68.35
Ap:80 [GLN] A2:1545 [C] 3.03 91.24
Ap:80 [GLN] A2:1546 [A] 4.18 91.24
Ap:117 [ARG] A2:1474 [G] 3.81 A2:1453 [A] 68.66
Ap:117 [ARG] A2:1475 [A] 4.57 A2:1452 [G] 68.66
Ap:117 [ARG] A2:1476 [G] 2.93 68.66
Ap:121 [VAL] A2:1475 [A] 3.77 A2:1452 [G] 76.63
Ap:121 [VAL] A2:1476 [G] 4.6 76.63
Ap:122 [ALA] A2:1475 [A] 4.9 A2:1452 [G] 64.5
Ap:123 [ASP] A2:1649 [G] 4.48 95.78
Ap:124 [PRO] A2:1394 [G] 4.43 46.2
Ap:124 [PRO] A2:1395 [G] 3.18 46.2
Ap:124 [PRO] A2:1475 [A] 4.2 A2:1452 [G] 46.2
Ap:124 [PRO] A2:1476 [G] 4.62 46.2
Ap:125 [ARG] A2:1648 [A] 4.68 A2:1678 [U] 96.77
Ap:125 [ARG] A2:1649 [G] 3.04 base/AA stacks 96.77
Ap:126 [ARG] A2:1394 [G] 3.36 55.41
Ap:126 [ARG] A2:1395 [G] 3.68 55.41
Ap:126 [ARG] A2:1396 [C] 4.39 A2:1451 [G] 55.41
Ap:126 [ARG] A2:1649 [G] 3.19 55.41
Ap:126 [ARG] A2:1650 [U] 4.21 A2:1676 [A] 55.41
Ap:127 [CYS] A2:1649 [G] 3.55 70.92
Ap:127 [CYS] A2:1650 [U] 3.32 A2:1676 [A] 70.92
Ap:127 [CYS] A2:1672 [G] 4.07 A2:1654 [U] 70.92
Ap:127 [CYS] A2:1673 [U] 3.49 A2:1653 [G] 70.92
Ap:127 [CYS] A2:1675 [G] 4.14 A2:1651 [A] 70.92
Ap:128 [GLU] A2:1480 [G] 3.46 A2:1392 [OMC] 94.85
Ap:128 [GLU] A2:1481 [A] 4.68 A2:1391 [U] 94.85
Ap:128 [GLU] A2:1649 [G] 4.16 94.85
Ap:128 [GLU] A2:1650 [U] 2.43 A2:1676 [A] 94.85
Ap:128 [GLU] A2:1671 [C] 4.6 A2:1655 [G] 94.85
Ap:129 [SER] A2:1480 [G] 4.58 A2:1392 [OMC] 86.3
Ap:129 [SER] A2:1670 [G] 3.88 A2:1656 [C] 86.3
Ap:129 [SER] A2:1671 [C] 2.9 A2:1655 [G] 86.3
Ap:130 [LYS] A2:1669 [U] 3.4 A2:1657 [G] 85.68
Ap:130 [LYS] A2:1670 [G] 2.75 A2:1656 [C] 85.68
Ap:130 [LYS] A2:1671 [C] 2.66 A2:1655 [G] 85.68
Ap:131 [LYS] A2:1480 [G] 3.15 A2:1392 [OMC] sugar:SC 96.23
Ap:131 [LYS] A2:1481 [A] 3.46 A2:1391 [U] 96.23
Ap:131 [LYS] A2:1670 [G] 3.63 A2:1656 [C] 96.23
Ap:132 [PHE] A2:1482 [G] 4.28 A2:1390 [C] 49.51
Ap:132 [PHE] A2:1669 [U] 3.55 A2:1657 [G] 49.51
Ap:132 [PHE] A2:1670 [G] 3.33 A2:1656 [C] 49.51
Ap:133 [GLY] A2:1669 [U] 2.66 A2:1657 [G] 86.41
Ap:134 [GLY] A2:1669 [U] 4.13 A2:1657 [G] 70.58
Ap:135 [PRO] A2:1652 [A] 4.2 A2:1674 [U] 43.43
Ap:136 [GLY] A2:1651 [A] 3.68 A2:1675 [G] 77.02
Ap:137 [ALA] A2:1650 [U] 4.06 A2:1676 [A] 95.05
Ap:137 [ALA] A2:1651 [A] 3.2 A2:1675 [G] 95.05
Ap:138 [ARG] A2:1480 [G] 3.67 A2:1392 [OMC] 98.21
Ap:138 [ARG] A2:1645 [C] 4.65 A2:1223 [G] 98.21
Ap:138 [ARG] A2:1646 [C] 3.12 A2:1222 [G] 98.21
Ap:138 [ARG] A2:1647 [C] 3.09 98.21
Ap:138 [ARG] A2:1648 [A] 3.12 A2:1678 [U] 98.21
Ap:138 [ARG] A2:1650 [U] 3.31 A2:1676 [A] 98.21
Ap:138 [ARG] A2:1651 [A] 2.94 A2:1675 [G] 98.21
Ap:139 [ALA] A2:1645 [C] 3.37 A2:1223 [G] 81.07
Ap:139 [ALA] A2:1646 [C] 4.15 A2:1222 [G] 81.07
Ap:139 [ALA] A2:1650 [U] 4.68 A2:1676 [A] 81.07
Ap:139 [ALA] A2:1651 [A] 3.19 A2:1675 [G] 81.07
Ap:139 [ALA] A2:1652 [A] 3.61 A2:1674 [U] 81.07
Ap:140 [ARG] A2:1645 [C] 3.0 A2:1223 [G] sugar:BB 78.1
Ap:140 [ARG] A2:1646 [C] 3.51 A2:1222 [G] 78.1
Ap:141 [TYR] A2:1528 [C] 4.79 A2:1232 [C] 52.28
Ap:141 [TYR] A2:1529 [G] 3.72 A2:1231 [C] 52.28
Ap:141 [TYR] A2:1644 [PSU] 4.16 A2:1224 [A] 52.28
Ap:141 [TYR] A2:1645 [C] 4.14 A2:1223 [G] 52.28
Ap:141 [TYR] A2:1668 [U] 3.64 A2:1658 [G] 52.28
Ap:141 [TYR] A2:1669 [U] 2.29 A2:1657 [G] 52.28
Ap:142 [GLN] A2:1225 [G] 4.2 A2:1643 [U] 94.71
Ap:142 [GLN] A2:1226 [U] 3.14 A2:1642 [A] sugar:SC, sugar:SC 94.71
Ap:142 [GLN] A2:1528 [C] 2.78 A2:1232 [C] 94.71
Ap:142 [GLN] A2:1529 [G] 2.88 A2:1231 [C] 94.71
Ap:142 [GLN] A2:1643 [U] 4.97 A2:1225 [G] 94.71
Ap:142 [GLN] A2:1644 [PSU] 3.21 A2:1224 [A] 94.71
Ap:143 [LYS] A2:1217 [C] 3.02 sugar:SC 69.35
Ap:143 [LYS] A2:1250 [C] 2.71 sugar:SC 69.35
Ap:143 [LYS] A2:1251 [A] 4.17 69.35
Ap:143 [LYS] A2:1528 [C] 4.75 A2:1232 [C] 69.35
Ap:143 [LYS] A2:1644 [PSU] 3.18 A2:1224 [A] sugar:BB 69.35
Ap:143 [LYS] A2:1645 [C] 3.74 A2:1223 [G] 69.35
Ap:144 [SER] A2:1250 [C] 4.29 93.92
Ap:144 [SER] A2:1253 [C] 3.6 93.92
Ap:144 [SER] A2:1527 [G] 3.05 A2:1233 [PSU] sugar:SC 93.92
Ap:144 [SER] A2:1528 [C] 3.94 A2:1232 [C] 93.92
Ap:145 [TYR] A2:1217 [C] 3.57 sugar:SC 87.6
Ap:145 [TYR] A2:1218 [A] 3.8 A2:1682 [U] 87.6
Ap:145 [TYR] A2:1250 [C] 3.52 87.6
Ap:145 [TYR] A2:1252 [A] 4.85 87.6
Ap:145 [TYR] A2:1253 [C] 3.92 87.6
Ap:145 [TYR] A2:1644 [PSU] 4.18 A2:1224 [A] 87.6
Ap:145 [TYR] A2:1645 [C] 4.68 A2:1223 [G] 87.6
Ap:146 [ARG] A2:1252 [A] 3.58 base:BB 98.77
Ap:146 [ARG] A2:1253 [C] 3.45 base:BB 98.77
Ap:146 [ARG] A2:1526 [C] 3.86 A2:1234 [G] 98.77
Ap:146 [ARG] A2:1527 [G] 3.75 A2:1233 [PSU] 98.77

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group92 7O7Y_Ap_A2 Ap: Us9, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) G1SGX4 Ribosomal protein S5 domain 2-like Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1i_1a 7O7Y_Ap_A2 0.70 0.93 2.23 0.3 Ribosomal protein S5 domain 2-like compare
2VQE_I_A 7O7Y_Ap_A2 0.67 0.92 2.64 0.3 Ribosomal protein S5 domain 2-like compare
7K00_I_A 7O7Y_Ap_A2 0.70 0.92 2.24 0.38 Ribosomal protein S5 domain 2-like compare
6S0X_i_a 7O7Y_Ap_A2 0.47 0.89 3.49 0.2 Ribosomal protein S5 domain 2-like compare