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All interfaces > All interologs > Interface groups > group93 > 4Y4O_1q_1a

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1q
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1q:2 [PRO] 1a:127 [G] 2.46 1a:234 [C] sugar:BB 46.29
1q:2 [PRO] 1a:128 [G] 3.18 1a:233 [C] 46.29
1q:2 [PRO] 1a:635 [G] 3.22 1a:603 [U] 46.29
1q:2 [PRO] 1a:636 [U] 3.73 1a:602 [A] 46.29
1q:3 [LYS] 1a:127 [G] 4.55 1a:234 [C] 46.84
1q:3 [LYS] 1a:128 [G] 3.46 1a:233 [C] 46.84
1q:3 [LYS] 1a:129 [U] 4.16 1a:232 [G] 46.84
1q:3 [LYS] 1a:130 [A] 4.61 46.84
1q:3 [LYS] 1a:189F [U] 3.07 46.84
1q:4 [LYS] 1a:235 [C] 4.81 1a:126 [G] 74.94
1q:4 [LYS] 1a:236 [G] 3.57 1a:125 [U] sugar:SC 74.94
1q:4 [LYS] 1a:635 [G] 4.41 1a:603 [U] 74.94
1q:12 [SER] 1a:275 [G] 4.46 1a:249 [U] 84.15
1q:12 [SER] 1a:276 [G] 2.79 1a:248 [C] 84.15
1q:14 [LYS] 1a:275 [G] 3.26 1a:249 [U] 71.11
1q:15 [MET] 1a:253 [U] 3.39 1a:273 [A] 80.03
1q:15 [MET] 1a:254 [G] 3.34 1a:272 [C] 80.03
1q:15 [MET] 1a:275 [G] 3.16 1a:249 [U] 80.03
1q:15 [MET] 1a:276 [G] 3.72 1a:248 [C] 80.03
1q:16 [GLN] 1a:254 [G] 2.5 1a:272 [C] base:SC, sugar:BB 41.79
1q:16 [GLN] 1a:255 [G] 2.92 1a:271 [C] sugar:SC 41.79
1q:16 [GLN] 1a:272 [C] 4.06 1a:254 [G] 41.79
1q:16 [GLN] 1a:273 [A] 3.42 1a:253 [U] 41.79
1q:17 [LYS] 1a:254 [G] 4.64 1a:272 [C] 76.23
1q:17 [LYS] 1a:255 [G] 3.11 1a:271 [C] 76.23
1q:17 [LYS] 1a:256 [U] 2.52 1a:270 [A] 76.23
1q:18 [THR] 1a:254 [G] 3.15 1a:272 [C] 94.63
1q:18 [THR] 1a:255 [G] 4.43 1a:271 [C] 94.63
1q:20 [THR] 1a:276 [G] 3.73 1a:248 [C] 70.03
1q:20 [THR] 1a:277 [C] 4.17 1a:247 [G] 70.03
1q:24 [GLU] 1a:280 [C] 4.07 31.96
1q:25 [ARG] 1a:237 [C] 3.09 1a:124 [G] 67.81
1q:25 [ARG] 1a:238 [G] 2.64 1a:123 [C] 67.81
1q:26 [GLN] 1a:596 [C] 4.27 1a:644 [G] 0.0
1q:26 [GLN] 1a:597 [G] 4.02 1a:643 [C] 0.0
1q:26 [GLN] 1a:644 [G] 4.83 1a:596 [C] 0.0
1q:26 [GLN] 1a:645 [C] 4.95 1a:594 [G] 0.0
1q:27 [PHE] 1a:238 [G] 4.46 1a:123 [C] 18.47
1q:28 [PRO] 1a:598 [U] 4.06 1a:640 [A] 29.33
1q:31 [LEU] 1a:300 [A] 4.81 1a:565 [U] 54.0
1q:31 [LEU] 1a:301 [G] 4.49 1a:296 [U] 54.0
1q:31 [LEU] 1a:564 [C] 3.41 54.0
1q:32 [TYR] 1a:563 [A] 4.78 1a:884 [U] 85.03
1q:32 [TYR] 1a:564 [C] 3.23 85.03
1q:34 [LYS] 1a:585 [G] 2.73 1a:756 [C] sugar:SC 94.55
1q:34 [LYS] 1a:586 [C] 3.64 1a:755 [G] 94.55
1q:34 [LYS] 1a:879 [C] 3.31 1a:821 [G] 94.55
1q:35 [VAL] 1a:586 [C] 4.24 1a:755 [G] 7.59
1q:35 [VAL] 1a:597 [G] 4.16 1a:643 [C] 7.59
1q:37 [LYS] 1a:280 [C] 3.92 50.32
1q:37 [LYS] 1a:585 [G] 3.64 1a:756 [C] 50.32
1q:37 [LYS] 1a:586 [C] 4.38 1a:755 [G] 50.32
1q:38 [ARG] 1a:280 [C] 3.38 base/AA stacks 66.5
1q:39 [SER] 1a:280 [C] 2.86 base:BB, base:BB, base:SC 67.21
1q:40 [LYS] 1a:236 [G] 2.83 1a:125 [U] 76.75
1q:40 [LYS] 1a:237 [C] 2.55 1a:124 [G] 76.75
1q:41 [LYS] 1a:277 [C] 3.15 1a:247 [G] 75.67
1q:41 [LYS] 1a:278 [G] 2.58 1a:279 [A] 75.67
1q:42 [TYR] 1a:235 [C] 4.62 1a:126 [G] 58.84
1q:42 [TYR] 1a:236 [G] 3.22 1a:125 [U] 58.84
1q:42 [TYR] 1a:237 [C] 3.46 1a:124 [G] 58.84
1q:43 [LEU] 1a:253 [U] 4.03 1a:273 [A] 56.48
1q:43 [LEU] 1a:254 [G] 4.14 1a:272 [C] 56.48
1q:43 [LEU] 1a:276 [G] 4.32 1a:248 [C] 56.48
1q:43 [LEU] 1a:277 [C] 4.26 1a:247 [G] 56.48
1q:45 [HIS] 1a:255 [G] 4.98 1a:271 [C] 94.1
1q:61 [GLU] 1a:127 [G] 3.13 1a:234 [C] base:SC 67.93
1q:61 [GLU] 1a:128 [G] 3.45 1a:233 [C] 67.93
1q:61 [GLU] 1a:189F [U] 4.51 67.93
1q:61 [GLU] 1a:234 [C] 4.35 1a:127 [G] 67.93
1q:61 [GLU] 1a:235 [C] 3.8 1a:126 [G] 67.93
1q:62 [SER] 1a:189F [U] 3.4 56.94
1q:62 [SER] 1a:234 [C] 4.2 1a:127 [G] 56.94
1q:63 [ARG] 1a:130 [A] 2.96 81.51
1q:63 [ARG] 1a:189F [U] 3.19 81.51
1q:63 [ARG] 1a:189G [G] 3.0 81.51
1q:63 [ARG] 1a:264 [U] 3.64 81.51
1q:63 [ARG] 1a:265 [G] 4.64 1a:260 [G] 81.51
1q:64 [PRO] 1a:130 [A] 3.59 86.96
1q:64 [PRO] 1a:234 [C] 3.77 1a:127 [G] 86.96
1q:64 [PRO] 1a:264 [U] 2.56 sugar:BB 86.96
1q:64 [PRO] 1a:265 [G] 3.08 1a:260 [G] 86.96
1q:65 [ILE] 1a:255 [G] 3.35 1a:271 [C] 66.52
1q:65 [ILE] 1a:264 [U] 4.68 66.52
1q:65 [ILE] 1a:265 [G] 3.2 1a:260 [G] 66.52
1q:65 [ILE] 1a:266 [G] 4.17 66.52
1q:66 [SER] 1a:253 [U] 4.87 1a:273 [A] 99.0
1q:66 [SER] 1a:254 [G] 2.39 1a:272 [C] 99.0
1q:66 [SER] 1a:255 [G] 3.52 1a:271 [C] 99.0
1q:66 [SER] 1a:265 [G] 3.07 1a:260 [G] 99.0
1q:66 [SER] 1a:266 [G] 4.84 99.0
1q:67 [LYS] 1a:252 [U] 4.16 1a:274 [A] 83.86
1q:67 [LYS] 1a:253 [U] 2.97 1a:273 [A] 83.86
1q:67 [LYS] 1a:254 [G] 2.36 1a:272 [C] 83.86
1q:67 [LYS] 1a:265 [G] 2.85 1a:260 [G] 83.86
1q:67 [LYS] 1a:266 [G] 2.99 83.86
1q:67 [LYS] 1a:267 [C] 3.28 1a:259 [G] 83.86
1q:68 [ARG] 1a:253 [U] 4.41 1a:273 [A] 55.39
1q:68 [ARG] 1a:254 [G] 3.77 1a:272 [C] 55.39
1q:68 [ARG] 1a:276 [G] 2.73 1a:248 [C] 55.39
1q:68 [ARG] 1a:277 [C] 2.96 1a:247 [G] 55.39
1q:69 [LYS] 1a:254 [G] 3.36 1a:272 [C] 93.2
1q:69 [LYS] 1a:255 [G] 2.65 1a:271 [C] 93.2
1q:70 [ARG] 1a:234 [C] 3.1 1a:127 [G] 65.74
1q:70 [ARG] 1a:235 [C] 3.23 1a:126 [G] 65.74
1q:70 [ARG] 1a:265 [G] 3.98 1a:260 [G] sugar:SC 65.74
1q:71 [PHE] 1a:235 [C] 3.94 1a:126 [G] 59.29
1q:71 [PHE] 1a:236 [G] 4.4 1a:125 [U] 59.29
1q:72 [ARG] 1a:189F [U] 3.15 44.08
1q:81 [ARG] 1a:647 [C] 4.39 1a:592 [G] 0.58
1q:87 [LYS] 1a:583 [A] 3.01 1a:758 [G] 42.85
1q:87 [LYS] 1a:584 [G] 3.19 1a:757 [U] 42.85
1q:88 [TYR] 1a:277 [C] 4.9 1a:247 [G] 46.16
1q:88 [TYR] 1a:278 [G] 4.56 1a:279 [A] 46.16
1q:90 [ILE] 1a:582 [U] 3.85 1a:759 [A] 76.21
1q:90 [ILE] 1a:583 [A] 3.78 1a:758 [G] 76.21
1q:91 [ARG] 1a:279 [A] 4.7 1a:278 [G] 64.36
1q:91 [ARG] 1a:280 [C] 2.71 64.36
1q:91 [ARG] 1a:583 [A] 3.38 1a:758 [G] 64.36
1q:91 [ARG] 1a:584 [G] 3.17 1a:757 [U] 64.36
1q:92 [ARG] 1a:278 [G] 2.58 1a:279 [A] base/AA stacks 69.29
1q:92 [ARG] 1a:279 [A] 3.54 1a:278 [G] 69.29
1q:94 [ASN] 1a:582 [U] 2.9 1a:759 [A] sugar:SC 83.95
1q:94 [ASN] 1a:583 [A] 3.21 1a:758 [G] sugar:SC 83.95
1q:94 [ASN] 1a:759 [A] 3.91 1a:582 [U] 83.95
1q:94 [ASN] 1a:760 [G] 3.04 1a:581 [G] base:BB 83.95
1q:95 [TYR] 1a:278 [G] 3.46 1a:279 [A] 58.04
1q:95 [TYR] 1a:279 [A] 2.47 1a:278 [G] base/AA stacks 58.04
1q:97 [SER] 1a:760 [G] 3.14 1a:581 [G] 68.63
1q:97 [SER] 1a:761 [G] 3.86 1a:580 [U] 68.63
1q:98 [LEU] 1a:246 [A] 3.29 1a:281 [G] sugar:BB 68.63
1q:98 [LEU] 1a:279 [A] 2.77 1a:278 [G] 68.63
1q:98 [LEU] 1a:759 [A] 4.38 1a:582 [U] 68.63
1q:98 [LEU] 1a:760 [G] 3.28 1a:581 [G] 68.63
1q:99 [SER] 1a:246 [A] 3.28 1a:281 [G] 68.63
1q:99 [SER] 1a:247 [G] 3.65 1a:277 [C] 68.63
1q:99 [SER] 1a:279 [A] 4.29 1a:278 [G] 68.63
1q:100 [LYS] 1a:243 [A] 4.77 1a:282 [A] 68.63
1q:100 [LYS] 1a:244 [U] 3.41 1a:893 [C] 68.63
1q:100 [LYS] 1a:246 [A] 3.15 1a:281 [G] 68.63
1q:100 [LYS] 1a:247 [G] 2.89 1a:277 [C] 68.63
1q:100 [LYS] 1a:894 [G] 4.99 1a:905 [U] 68.63
1q:100 [LYS] 1a:895 [G] 3.79 1a:904 [C] 68.63
1q:100 [LYS] 1a:896 [C] 4.4 1a:903 [G] 68.63

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group93 4Y4O_1q_1a 1q: 30s ribosomal protein s17, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P0DOY7 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1q_1a 7O7Y_Ak_A2 0.65 0.92 2.68 0.31 Nucleic acid-binding proteins compare
4Y4O_1q_1a 7K00_Q_A 0.77 0.97 2.06 0.5 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
4Y4O_1q_1a 7RYG_q_a 0.77 0.91 2.82 0.57 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
4Y4O_1q_1a 6S0X_q_a 0.46 0.94 3.18 0.42 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
2VQE_Q_A 4Y4O_1q_1a 0.96 0.99 0.53 0.91 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare