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All interfaces > All interologs > Interface groups > group93 > 4Y4O_1q_1a vs 6S0X_q_a

Interface analysis


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Licorice
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Licorice
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Common contacts -

4Y4O_1q
4Y4O_1a
6S0X_q
6S0X_a
Conserved?
1q:31 [LEU] 1a:300 [A] q:35 [LEU] a:308 [A] ✔
1q:31 [LEU] 1a:301 [G] q:35 [LEU] a:309 [G] ✔
1q:31 [LEU] 1a:564 [C] q:35 [LEU] a:572 [U] ✔
1q:64 [PRO] 1a:130 [A] q:68 [PRO] a:130 [A] ✔
1q:64 [PRO] 1a:234 [C] q:68 [PRO] a:242 [C] ✔
1q:64 [PRO] 1a:264 [U] q:68 [PRO] a:272 [C] ✔
1q:64 [PRO] 1a:265 [G] q:68 [PRO] a:273 [G] ✔
1q:42 [TYR] 1a:235 [C] q:46 [TYR] a:243 [C] ✔
1q:42 [TYR] 1a:236 [G] q:46 [TYR] a:244 [G] ✔
1q:42 [TYR] 1a:237 [C] q:46 [TYR] a:245 [C] ✔
1q:3 [LYS] 1a:127 [G] q:8 [LYS] a:126 [G] ✔
1q:3 [LYS] 1a:128 [G] q:8 [LYS] a:127 [A] ✔
1q:18 [THR] 1a:254 [G] q:22 [THR] a:262 [G] ✔
1q:18 [THR] 1a:255 [G] q:22 [THR] a:263 [G] ✔
1q:69 [LYS] 1a:254 [G] q:72 [THR] a:262 [G] ✔
1q:69 [LYS] 1a:255 [G] q:72 [THR] a:263 [G] ✔
1q:12 [SER] 1a:276 [G] q:16 [SER] a:284 [G] ✔
1q:32 [TYR] 1a:564 [C] q:36 [TYR] a:572 [U] ✔
1q:39 [SER] 1a:280 [C] q:43 [SER] a:288 [C] ✔
1q:17 [LYS] 1a:254 [G] q:21 [LYS] a:262 [G] ✔
1q:17 [LYS] 1a:255 [G] q:21 [LYS] a:263 [G] ✔
1q:66 [SER] 1a:254 [G] q:71 [ALA] a:262 [G] ✔
1q:66 [SER] 1a:265 [G] q:71 [ALA] a:273 [G] ✔
1q:66 [SER] 1a:266 [G] q:71 [ALA] a:274 [G] ✔
1q:71 [PHE] 1a:235 [C] q:74 [ARG] a:243 [C] ✔
1q:2 [PRO] 1a:128 [G] q:7 [ARG] a:127 [A] ✔
1q:62 [SER] 1a:234 [C] q:66 [THR] a:242 [C] ✔
1q:16 [GLN] 1a:254 [G] q:20 [ASP] a:262 [G] ✔
1q:16 [GLN] 1a:255 [G] q:20 [ASP] a:263 [G] ✔
1q:65 [ILE] 1a:255 [G] q:70 [SER] a:263 [G] ✔
1q:65 [ILE] 1a:264 [U] q:70 [SER] a:272 [C] ✔
1q:65 [ILE] 1a:265 [G] q:70 [SER] a:273 [G] ✔
1q:15 [MET] 1a:254 [G] q:19 [MET] a:262 [G] ✔
1q:61 [GLU] 1a:127 [G] q:65 [GLU] a:126 [G] ✔
1q:61 [GLU] 1a:234 [C] q:65 [GLU] a:242 [C] ✔
1q:61 [GLU] 1a:235 [C] q:65 [GLU] a:243 [C] ✔
1q:35 [VAL] 1a:597 [G] q:39 [ARG] a:605 [G] ✔
1q:40 [LYS] 1a:237 [C] q:44 [LYS] a:245 [C] ✔
1q:26 [GLN] 1a:645 [C] q:30 [TYR] a:653 [G] ✔
1q:41 [LYS] 1a:277 [C] q:45 [LYS] a:285 [C] ✔
1q:41 [LYS] 1a:278 [G] q:45 [LYS] a:286 [A] ✔
1q:34 [LYS] 1a:586 [C] q:38 [LYS] a:594 [C] ✔
1q:63 [ARG] 1a:130 [A] q:67 [ARG] a:130 [A] ✔
1q:63 [ARG] 1a:264 [U] q:67 [ARG] a:272 [C] ✔
1q:43 [LEU] 1a:276 [G] q:47 [LYS] a:284 [G] ✔
1q:43 [LEU] 1a:277 [C] q:47 [LYS] a:285 [C] ✔
1q:3 [LYS] 1a:129 [U] q:8 [LYS] a:128 [U] ❌ 6S0X_q_a
1q:3 [LYS] 1a:130 [A] q:8 [LYS] a:130 [A] ❌ 6S0X_q_a
1q:66 [SER] 1a:255 [G] q:71 [ALA] a:263 [G] ❌ 6S0X_q_a
1q:71 [PHE] 1a:236 [G] q:74 [ARG] a:244 [G] ❌ 6S0X_q_a
1q:45 [HIS] 1a:255 [G] q:49 [HIS] a:263 [G] ❌ 6S0X_q_a
1q:2 [PRO] 1a:127 [G] q:7 [ARG] a:126 [G] ❌ 6S0X_q_a
1q:70 [ARG] 1a:234 [C] q:73 [LYS] a:242 [C] ❌ 6S0X_q_a
1q:70 [ARG] 1a:235 [C] q:73 [LYS] a:243 [C] ❌ 6S0X_q_a
1q:70 [ARG] 1a:265 [G] q:73 [LYS] a:273 [G] ❌ 6S0X_q_a
1q:65 [ILE] 1a:266 [G] q:70 [SER] a:274 [G] ❌ 6S0X_q_a
1q:15 [MET] 1a:276 [G] q:19 [MET] a:284 [G] ❌ 6S0X_q_a
1q:61 [GLU] 1a:128 [G] q:65 [GLU] a:127 [A] ❌ 6S0X_q_a
1q:38 [ARG] 1a:280 [C] q:42 [TYR] a:288 [C] ❌ 6S0X_q_a
1q:35 [VAL] 1a:586 [C] q:39 [ARG] a:594 [C] ❌ 6S0X_q_a
1q:40 [LYS] 1a:236 [G] q:44 [LYS] a:244 [G] ❌ 6S0X_q_a
1q:26 [GLN] 1a:597 [G] q:30 [TYR] a:605 [G] ❌ 6S0X_q_a
1q:63 [ARG] 1a:265 [G] q:67 [ARG] a:273 [G] ❌ 6S0X_q_a
1q:43 [LEU] 1a:254 [G] q:47 [LYS] a:262 [G] ❌ 6S0X_q_a
1q:14 [LYS] 1a:254 [G] q:18 [LYS] a:262 [G] ❌ 4Y4O_1q_1a
1q:14 [LYS] 1a:276 [G] q:18 [LYS] a:284 [G] ❌ 4Y4O_1q_1a
1q:15 [MET] 1a:255 [G] q:19 [MET] a:263 [G] ❌ 4Y4O_1q_1a
1q:38 [ARG] 1a:237 [C] q:42 [TYR] a:245 [C] ❌ 4Y4O_1q_1a
1q:38 [ARG] 1a:236 [G] q:42 [TYR] a:244 [G] ❌ 4Y4O_1q_1a
1q:41 [LYS] 1a:236 [G] q:45 [LYS] a:244 [G] ❌ 4Y4O_1q_1a
1q:63 [ARG] 1a:129 [U] q:67 [ARG] a:128 [U] ❌ 4Y4O_1q_1a
1q:2 [PRO] 1a:130 [A] q:7 [ARG] a:130 [A] ❌ 4Y4O_1q_1a
1q:2 [PRO] 1a:129 [U] q:7 [ARG] a:128 [U] ❌ 4Y4O_1q_1a
1q:65 [ILE] 1a:254 [G] q:70 [SER] a:262 [G] ❌ 4Y4O_1q_1a
1q:66 [SER] 1a:267 [C] q:71 [ALA] a:275 [C] ❌ 4Y4O_1q_1a
1q:70 [ARG] 1a:254 [G] q:73 [LYS] a:262 [G] ❌ 4Y4O_1q_1a
1q:70 [ARG] 1a:255 [G] q:73 [LYS] a:263 [G] ❌ 4Y4O_1q_1a
1q:71 [PHE] 1a:234 [C] q:74 [ARG] a:242 [C] ❌ 4Y4O_1q_1a
1q:72 [ARG] 1a:235 [C] q:75 [PHE] a:243 [C] ❌ 4Y4O_1q_1a
1q:27 [PHE] 1a:238 [G] q:31 [LYS] a:246 [G] ❌ 6S0X_q:31, 6S0X_a:246 no longer at interface
1q:3 [LYS] 1a:189F [U] q:8 [LYS] a:196 [A] ❌ 6S0X_a:196 no longer at interface
1q:37 [LYS] 1a:585 [G] q:41 [LYS] a:593 [G] ❌ 6S0X_q:41, 6S0X_a:593 no longer at interface
1q:12 [SER] 1a:275 [G] q:16 [SER] a:283 [G] ❌ 6S0X_a:283 no longer at interface
1q:32 [TYR] 1a:563 [A] q:36 [TYR] a:571 [A] ❌ 6S0X_a:571 no longer at interface
1q:17 [LYS] 1a:256 [U] q:21 [LYS] a:264 [U] ❌ 6S0X_a:264 no longer at interface
1q:66 [SER] 1a:253 [U] q:71 [ALA] a:261 [U] ❌ 6S0X_a:261 no longer at interface
1q:2 [PRO] 1a:635 [G] q:7 [ARG] a:643 [A] ❌ 6S0X_a:643 no longer at interface
1q:2 [PRO] 1a:636 [U] q:7 [ARG] a:644 [U] ❌ 6S0X_a:644 no longer at interface
1q:14 [LYS] 1a:275 [G] q:18 [LYS] a:283 [G] ❌ 6S0X_a:283 no longer at interface
1q:4 [LYS] 1a:635 [G] q:9 [VAL] a:643 [A] ❌ 6S0X_q:9, 6S0X_a:643 no longer at interface
1q:62 [SER] 1a:189F [U] q:66 [THR] a:196 [A] ❌ 6S0X_a:196 no longer at interface
1q:16 [GLN] 1a:272 [C] q:20 [ASP] a:280 [C] ❌ 6S0X_a:280 no longer at interface
1q:16 [GLN] 1a:273 [A] q:20 [ASP] a:281 [A] ❌ 6S0X_a:281 no longer at interface
1q:15 [MET] 1a:253 [U] q:19 [MET] a:261 [U] ❌ 6S0X_a:261 no longer at interface
1q:15 [MET] 1a:275 [G] q:19 [MET] a:283 [G] ❌ 6S0X_a:283 no longer at interface
1q:61 [GLU] 1a:189F [U] q:65 [GLU] a:196 [A] ❌ 6S0X_a:196 no longer at interface
1q:28 [PRO] 1a:598 [U] q:32 [THR] a:606 [U] ❌ 6S0X_q:32, 6S0X_a:606 no longer at interface
1q:25 [ARG] 1a:238 [G] q:29 [THR] a:246 [G] ❌ 6S0X_q:29, 6S0X_a:246 no longer at interface
1q:26 [GLN] 1a:596 [C] q:30 [TYR] a:604 [A] ❌ 6S0X_a:604 no longer at interface
1q:26 [GLN] 1a:644 [G] q:30 [TYR] a:652 [U] ❌ 6S0X_a:652 no longer at interface
1q:34 [LYS] 1a:585 [G] q:38 [LYS] a:593 [G] ❌ 6S0X_a:593 no longer at interface
1q:34 [LYS] 1a:879 [C] q:38 [LYS] a:888 [C] ❌ 6S0X_a:888 no longer at interface
1q:63 [ARG] 1a:189F [U] q:67 [ARG] a:196 [A] ❌ 6S0X_a:196 no longer at interface
1q:63 [ARG] 1a:189G [G] q:67 [ARG] a:197 [U] ❌ 6S0X_a:197 no longer at interface
1q:72 [ARG] 1a:189F [U] q:75 [PHE] a:196 [A] ❌ 6S0X_a:196 no longer at interface
1q:43 [LEU] 1a:253 [U] q:47 [LYS] a:261 [U] ❌ 6S0X_a:261 no longer at interface
1q:5 [VAL] 1a:126 [G] q:10 [TYR] a:125 [G] ❌ 4Y4O_1q:5, 4Y4O_1a:126 no longer at interface
1q:30 [PRO] 1a:302 [G] q:34 [LYS] a:310 [G] ❌ 4Y4O_1q:30, 4Y4O_1a:302 no longer at interface
1q:31 [LEU] 1a:302 [G] q:35 [LEU] a:310 [G] ❌ 4Y4O_1a:302 no longer at interface
1q:60 [ILE] 1a:189E [U] q:64 [GLN] a:193 [C] ❌ 4Y4O_1q:60, 4Y4O_1a:189E no longer at interface
1q:63 [ARG] 1a:263 [A] q:67 [ARG] a:271 [A] ❌ 4Y4O_1a:263 no longer at interface
1q:2 [PRO] 1a:129A [G] q:7 [ARG] a:129 [A] ❌ 4Y4O_1a:129A no longer at interface
1q:20 [THR] 1a:276 [G] q:24 [THR] a:284 [G] ❌ 6S0X_q:24 no longer at interface
1q:20 [THR] 1a:277 [C] q:24 [THR] a:285 [C] ❌ 6S0X_q:24 no longer at interface
1q:37 [LYS] 1a:280 [C] q:41 [LYS] a:288 [C] ❌ 6S0X_q:41 no longer at interface
1q:37 [LYS] 1a:586 [C] q:41 [LYS] a:594 [C] ❌ 6S0X_q:41 no longer at interface
1q:4 [LYS] 1a:235 [C] q:9 [VAL] a:243 [C] ❌ 6S0X_q:9 no longer at interface
1q:4 [LYS] 1a:236 [G] q:9 [VAL] a:244 [G] ❌ 6S0X_q:9 no longer at interface
1q:24 [GLU] 1a:280 [C] q:28 [GLU] a:288 [C] ❌ 6S0X_q:28 no longer at interface
1q:25 [ARG] 1a:237 [C] q:29 [THR] a:245 [C] ❌ 6S0X_q:29 no longer at interface
1q:5 [VAL] 1a:235 [C] q:10 [TYR] a:243 [C] ❌ 4Y4O_1q:5 no longer at interface
1q:30 [PRO] 1a:300 [A] q:34 [LYS] a:308 [A] ❌ 4Y4O_1q:30 no longer at interface
1q:30 [PRO] 1a:301 [G] q:34 [LYS] a:309 [G] ❌ 4Y4O_1q:30 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA 0.94 3.18 0.42 0.82 0.95 0.75 0.77 0.46 0.39 0.19 0.57


Other pairs involving 4Y4O_1q_1a or 6S0X_q_a

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1q_1a 7K00_Q_A 0.77 0.97 2.06 0.5 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
4Y4O_1q_1a 7O7Y_Ak_A2 0.65 0.92 2.68 0.31 Nucleic acid-binding proteins compare
4Y4O_1q_1a 7RYG_q_a 0.77 0.91 2.82 0.57 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
4Y4O_1q_1a 6S0X_q_a 0.46 0.94 3.18 0.42 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
2VQE_Q_A 6S0X_q_a 0.48 0.94 3.14 0.42 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
2VQE_Q_A 4Y4O_1q_1a 0.96 0.99 0.53 0.91 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7K00_Q_A 0.54 0.96 3.12 0.44 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7RYG_q_a 0.59 0.97 1.98 0.51 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7O7Y_Ak_A2 0.48 0.9 3.09 0.32 Nucleic acid-binding proteins compare