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All interfaces > All interologs > Interface groups > group93 > 6S0X_q_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_q
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
q:5 [ASN] a:128 [U] 2.72 a:240 [A] 51.96
q:5 [ASN] a:129 [A] 3.1 51.96
q:5 [ASN] a:194 [G] 4.1 a:196 [A] 51.96
q:6 [ASP] a:127 [A] 3.32 a:241 [U] 49.88
q:6 [ASP] a:128 [U] 3.22 a:240 [A] 49.88
q:6 [ASP] a:194 [G] 3.26 a:196 [A] 49.88
q:7 [ARG] a:127 [A] 2.62 a:241 [U] 38.62
q:7 [ARG] a:128 [U] 3.39 a:240 [A] 38.62
q:7 [ARG] a:129 [A] 4.51 38.62
q:7 [ARG] a:130 [A] 4.01 38.62
q:7 [ARG] a:194 [G] 2.9 a:196 [A] base:SC 38.62
q:8 [LYS] a:126 [G] 3.39 a:242 [C] 57.11
q:8 [LYS] a:127 [A] 4.64 a:241 [U] 57.11
q:10 [TYR] a:125 [G] 4.77 a:243 [C] 42.99
q:10 [TYR] a:243 [C] 4.32 a:125 [G] 42.99
q:16 [SER] a:284 [G] 2.96 a:256 [C] 84.31
q:18 [LYS] a:262 [G] 4.22 a:280 [C] 67.98
q:18 [LYS] a:284 [G] 4.88 a:256 [C] 67.98
q:19 [MET] a:262 [G] 2.79 a:280 [C] sugar:BB 78.14
q:19 [MET] a:263 [G] 4.35 a:279 [C] 78.14
q:20 [ASP] a:262 [G] 3.32 a:280 [C] 33.74
q:20 [ASP] a:263 [G] 3.15 a:279 [C] sugar:BB 33.74
q:21 [LYS] a:262 [G] 4.51 a:280 [C] 74.16
q:21 [LYS] a:263 [G] 4.87 a:279 [C] 74.16
q:22 [THR] a:262 [G] 2.34 a:280 [C] sugar:SC 94.12
q:22 [THR] a:263 [G] 4.6 a:279 [C] 94.12
q:30 [TYR] a:653 [G] 4.98 a:602 [U] 0.0
q:34 [LYS] a:308 [A] 3.75 a:573 [U] 58.67
q:34 [LYS] a:309 [G] 2.96 a:304 [U] 58.67
q:34 [LYS] a:310 [G] 3.27 a:303 [C] 58.67
q:35 [LEU] a:308 [A] 3.89 a:573 [U] sugar:BB 64.44
q:35 [LEU] a:309 [G] 3.37 a:304 [U] 64.44
q:35 [LEU] a:310 [G] 4.25 a:303 [C] 64.44
q:35 [LEU] a:572 [U] 3.07 64.44
q:36 [TYR] a:572 [U] 3.71 81.12
q:38 [LYS] a:594 [C] 4.78 a:763 [G] 93.91
q:39 [ARG] a:605 [G] 3.07 a:651 [C] sugar:SC, sugar:SC 29.55
q:42 [TYR] a:244 [G] 4.98 a:124 [U] 60.91
q:42 [TYR] a:245 [C] 3.59 a:123 [G] 60.91
q:43 [SER] a:288 [C] 4.31 51.97
q:44 [LYS] a:245 [C] 3.42 a:123 [G] 69.03
q:45 [LYS] a:244 [G] 4.96 a:124 [U] 72.01
q:45 [LYS] a:285 [C] 4.37 a:255 [G] 72.01
q:45 [LYS] a:286 [A] 4.95 72.01
q:46 [TYR] a:243 [C] 4.0 a:125 [G] 42.57
q:46 [TYR] a:244 [G] 2.87 a:124 [U] 42.57
q:46 [TYR] a:245 [C] 2.46 a:123 [G] 42.57
q:47 [LYS] a:284 [G] 4.7 a:256 [C] 21.57
q:47 [LYS] a:285 [C] 2.77 a:255 [G] 21.57
q:49 [HIS] a:195 [C] 4.57 92.46
q:51 [GLU] a:195 [C] 3.0 base/AA stacks 61.53
q:52 [ASN] a:195 [C] 4.66 17.72
q:64 [GLN] a:193 [C] 4.88 a:197 [U] 28.32
q:64 [GLN] a:194 [G] 2.83 a:196 [A] 28.32
q:65 [GLU] a:126 [G] 4.35 a:242 [C] 64.11
q:65 [GLU] a:194 [G] 4.45 a:196 [A] 64.11
q:65 [GLU] a:242 [C] 3.59 a:126 [G] sugar:SC 64.11
q:65 [GLU] a:243 [C] 3.39 a:125 [G] 64.11
q:66 [THR] a:194 [G] 2.39 a:196 [A] 74.89
q:66 [THR] a:195 [C] 4.64 74.89
q:66 [THR] a:242 [C] 4.59 a:126 [G] 74.89
q:67 [ARG] a:128 [U] 4.89 a:240 [A] 82.73
q:67 [ARG] a:130 [A] 3.32 82.73
q:67 [ARG] a:194 [G] 3.93 a:196 [A] 82.73
q:67 [ARG] a:271 [A] 4.49 82.73
q:67 [ARG] a:272 [C] 3.02 sugar:SC 82.73
q:68 [PRO] a:130 [A] 3.29 87.43
q:68 [PRO] a:242 [C] 3.66 a:126 [G] 87.43
q:68 [PRO] a:272 [C] 2.33 sugar:BB 87.43
q:68 [PRO] a:273 [G] 4.8 87.43
q:69 [LEU] a:195 [C] 4.29 59.02
q:69 [LEU] a:272 [C] 3.73 59.02
q:69 [LEU] a:273 [G] 3.23 59.02
q:70 [SER] a:262 [G] 4.84 a:280 [C] 99.0
q:70 [SER] a:263 [G] 2.79 a:279 [C] 99.0
q:70 [SER] a:272 [C] 3.87 99.0
q:70 [SER] a:273 [G] 3.36 99.0
q:71 [ALA] a:262 [G] 4.86 a:280 [C] 83.24
q:71 [ALA] a:273 [G] 3.14 83.24
q:71 [ALA] a:274 [G] 4.09 83.24
q:71 [ALA] a:275 [C] 3.79 a:267 [G] 83.24
q:72 [THR] a:262 [G] 3.28 a:280 [C] 55.38
q:72 [THR] a:263 [G] 4.95 a:279 [C] 55.38
q:73 [LYS] a:262 [G] 4.62 a:280 [C] 93.38
q:73 [LYS] a:263 [G] 3.22 a:279 [C] 93.38
q:74 [ARG] a:242 [C] 2.45 a:126 [G] 59.88
q:74 [ARG] a:243 [C] 3.33 a:125 [G] 59.88
q:75 [PHE] a:243 [C] 3.59 a:125 [G] 58.09
q:76 [ARG] a:194 [G] 2.95 a:196 [A] 40.42
q:76 [ARG] a:195 [C] 2.67 40.42
q:77 [LEU] a:195 [C] 3.66 73.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group93 6S0X_q_a q: 30s ribosomal protein s17, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) A0A077VLD5 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_q_a 7O7Y_Ak_A2 0.48 0.9 3.09 0.32 Nucleic acid-binding proteins compare
4Y4O_1q_1a 6S0X_q_a 0.46 0.94 3.18 0.42 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
2VQE_Q_A 6S0X_q_a 0.48 0.94 3.14 0.42 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7K00_Q_A 0.54 0.96 3.12 0.44 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7RYG_q_a 0.59 0.97 1.98 0.51 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare