RNAprotDB

All interfaces > All interologs > Interface groups > group93 > 6S0X_q_a vs 7O7Y_Ak_A2

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6S0X_q
6S0X_a
7O7Y_Ak
7O7Y_A2
Conserved?
q:45 [LYS] a:285 [C] Ak:108 [ASN] A2:397 [U] ✔
q:45 [LYS] a:286 [A] Ak:108 [ASN] A2:398 [G] ✔
q:67 [ARG] a:130 [A] Ak:132 [ARG] A2:114 [G] ✔
q:67 [ARG] a:272 [C] Ak:132 [ARG] A2:384 [G] ✔
q:68 [PRO] a:130 [A] Ak:133 [PRO] A2:114 [G] ✔
q:68 [PRO] a:242 [C] Ak:133 [PRO] A2:352 [G] ✔
q:68 [PRO] a:272 [C] Ak:133 [PRO] A2:384 [G] ✔
q:68 [PRO] a:273 [G] Ak:133 [PRO] A2:385 [U] ✔
q:71 [ALA] a:262 [G] Ak:136 [LYS] A2:374 [G] ✔
q:71 [ALA] a:273 [G] Ak:136 [LYS] A2:385 [U] ✔
q:71 [ALA] a:274 [G] Ak:136 [LYS] A2:386 [G] ✔
q:71 [ALA] a:275 [C] Ak:136 [LYS] A2:387 [C] ✔
q:19 [MET] a:262 [G] Ak:82 [MET] A2:374 [G] ✔
q:44 [LYS] a:245 [C] Ak:107 [LYS] A2:355 [OMU] ✔
q:46 [TYR] a:244 [G] Ak:109 [MET] A2:354 [C] ✔
q:21 [LYS] a:263 [G] Ak:84 [ARG] A2:375 [G] ✔
q:35 [LEU] a:308 [A] Ak:98 [LYS] A2:421 [G] ✔
q:35 [LEU] a:309 [G] Ak:98 [LYS] A2:422 [G] ✔
q:35 [LEU] a:310 [G] Ak:98 [LYS] A2:423 [U] ✔
q:35 [LEU] a:572 [U] Ak:98 [LYS] A2:661 [C] ✔
q:6 [ASP] a:194 [G] Ak:42 [LEU] A2:292 [G] ✔
q:73 [LYS] a:262 [G] Ak:138 [VAL] A2:374 [G] ✔
q:8 [LYS] a:126 [G] Ak:71 [ARG] A2:110 [U] ✔
q:36 [TYR] a:572 [U] Ak:99 [TYR] A2:661 [C] ✔
q:22 [THR] a:262 [G] Ak:85 [THR] A2:374 [G] ✔
q:22 [THR] a:263 [G] Ak:85 [THR] A2:375 [G] ✔
q:18 [LYS] a:284 [G] Ak:81 [LYS] A2:396 [G] ✔
q:70 [SER] a:262 [G] Ak:135 [SER] A2:374 [G] ✔
q:70 [SER] a:263 [G] Ak:135 [SER] A2:375 [G] ✔
q:70 [SER] a:273 [G] Ak:135 [SER] A2:385 [U] ✔
q:72 [THR] a:262 [G] Ak:137 [THR] A2:374 [G] ✔
q:47 [LYS] a:284 [G] Ak:110 [SER] A2:396 [G] ✔
q:47 [LYS] a:285 [C] Ak:110 [SER] A2:397 [U] ✔
q:74 [ARG] a:242 [C] Ak:139 [ARG] A2:352 [G] ✔
q:74 [ARG] a:243 [C] Ak:139 [ARG] A2:353 [U] ✔
q:65 [GLU] a:126 [G] Ak:130 [GLU] A2:110 [U] ✔
q:65 [GLU] a:242 [C] Ak:130 [GLU] A2:352 [G] ✔
q:65 [GLU] a:243 [C] Ak:130 [GLU] A2:353 [U] ✔
q:16 [SER] a:284 [G] Ak:79 [LYS] A2:396 [G] ✔
q:7 [ARG] a:127 [A] Ak:69 [ARG] A2:111 [A] ✔
q:7 [ARG] a:128 [U] Ak:69 [ARG] A2:112 [U] ✔
q:7 [ARG] a:129 [A] Ak:69 [ARG] A2:113 [G] ✔
q:7 [ARG] a:130 [A] Ak:69 [ARG] A2:114 [G] ✔
q:7 [ARG] a:194 [G] Ak:69 [ARG] A2:292 [G] ✔
q:20 [ASP] a:262 [G] Ak:83 [GLN] A2:374 [G] ✔
q:20 [ASP] a:263 [G] Ak:83 [GLN] A2:375 [G] ✔
q:69 [LEU] a:272 [C] Ak:134 [LEU] A2:384 [G] ✔
q:69 [LEU] a:273 [G] Ak:134 [LEU] A2:385 [U] ✔
q:75 [PHE] a:243 [C] Ak:140 [PHE] A2:353 [U] ✔
q:34 [LYS] a:308 [A] Ak:97 [ARG] A2:421 [G] ✔
q:34 [LYS] a:309 [G] Ak:97 [ARG] A2:422 [G] ✔
q:43 [SER] a:288 [C] Ak:106 [HIS] A2:400 [C] ✔
q:45 [LYS] a:244 [G] Ak:108 [ASN] A2:354 [C] ❌ 7O7Y_Ak_A2
q:67 [ARG] a:128 [U] Ak:132 [ARG] A2:112 [U] ❌ 7O7Y_Ak_A2
q:67 [ARG] a:194 [G] Ak:132 [ARG] A2:292 [G] ❌ 7O7Y_Ak_A2
q:42 [TYR] a:244 [G] Ak:105 [ARG] A2:354 [C] ❌ 7O7Y_Ak_A2
q:42 [TYR] a:245 [C] Ak:105 [ARG] A2:355 [OMU] ❌ 7O7Y_Ak_A2
q:19 [MET] a:263 [G] Ak:82 [MET] A2:375 [G] ❌ 7O7Y_Ak_A2
q:49 [HIS] a:195 [C] Ak:112 [HIS] A2:293 [A] ❌ 7O7Y_Ak_A2
q:46 [TYR] a:243 [C] Ak:109 [MET] A2:353 [U] ❌ 7O7Y_Ak_A2
q:46 [TYR] a:245 [C] Ak:109 [MET] A2:355 [OMU] ❌ 7O7Y_Ak_A2
q:21 [LYS] a:262 [G] Ak:84 [ARG] A2:374 [G] ❌ 7O7Y_Ak_A2
q:6 [ASP] a:127 [A] Ak:42 [LEU] A2:111 [A] ❌ 7O7Y_Ak_A2
q:6 [ASP] a:128 [U] Ak:42 [LEU] A2:112 [U] ❌ 7O7Y_Ak_A2
q:73 [LYS] a:263 [G] Ak:138 [VAL] A2:375 [G] ❌ 7O7Y_Ak_A2
q:8 [LYS] a:127 [A] Ak:71 [ARG] A2:111 [A] ❌ 7O7Y_Ak_A2
q:18 [LYS] a:262 [G] Ak:81 [LYS] A2:374 [G] ❌ 7O7Y_Ak_A2
q:70 [SER] a:272 [C] Ak:135 [SER] A2:384 [G] ❌ 7O7Y_Ak_A2
q:72 [THR] a:263 [G] Ak:137 [THR] A2:375 [G] ❌ 7O7Y_Ak_A2
q:65 [GLU] a:194 [G] Ak:130 [GLU] A2:292 [G] ❌ 7O7Y_Ak_A2
q:69 [LEU] a:195 [C] Ak:134 [LEU] A2:293 [A] ❌ 7O7Y_Ak_A2
q:34 [LYS] a:310 [G] Ak:97 [ARG] A2:423 [U] ❌ 7O7Y_Ak_A2
q:10 [TYR] a:125 [G] Ak:73 [LEU] A2:109 [PSU] ❌ 7O7Y_Ak_A2
q:10 [TYR] a:243 [C] Ak:73 [LEU] A2:353 [U] ❌ 7O7Y_Ak_A2
q:38 [LYS] a:572 [U] Ak:101 [ARG] A2:661 [C] ❌ 6S0X_q_a
q:42 [TYR] a:288 [C] Ak:105 [ARG] A2:400 [C] ❌ 6S0X_q_a
q:43 [SER] a:286 [A] Ak:106 [HIS] A2:398 [G] ❌ 6S0X_q_a
q:46 [TYR] a:285 [C] Ak:109 [MET] A2:397 [U] ❌ 6S0X_q_a
q:49 [HIS] a:263 [G] Ak:112 [HIS] A2:375 [G] ❌ 6S0X_q_a
q:65 [GLU] a:127 [A] Ak:130 [GLU] A2:111 [A] ❌ 6S0X_q_a
q:67 [ARG] a:273 [G] Ak:132 [ARG] A2:385 [U] ❌ 6S0X_q_a
q:69 [LEU] a:263 [G] Ak:134 [LEU] A2:375 [G] ❌ 6S0X_q_a
q:69 [LEU] a:274 [G] Ak:134 [LEU] A2:386 [G] ❌ 6S0X_q_a
q:70 [SER] a:275 [C] Ak:135 [SER] A2:387 [C] ❌ 6S0X_q_a
q:70 [SER] a:274 [G] Ak:135 [SER] A2:386 [G] ❌ 6S0X_q_a
q:75 [PHE] a:244 [G] Ak:140 [PHE] A2:354 [C] ❌ 6S0X_q_a
q:7 [ARG] a:195 [C] Ak:69 [ARG] A2:293 [A] ❌ 6S0X_q_a
q:8 [LYS] a:125 [G] Ak:71 [ARG] A2:109 [PSU] ❌ 6S0X_q_a
q:8 [LYS] a:244 [G] Ak:71 [ARG] A2:354 [C] ❌ 6S0X_q_a
q:8 [LYS] a:243 [C] Ak:71 [ARG] A2:353 [U] ❌ 6S0X_q_a
q:10 [TYR] a:244 [G] Ak:73 [LEU] A2:354 [C] ❌ 6S0X_q_a
q:16 [SER] a:285 [C] Ak:79 [LYS] A2:397 [U] ❌ 6S0X_q_a
q:19 [MET] a:284 [G] Ak:82 [MET] A2:396 [G] ❌ 6S0X_q_a
q:67 [ARG] a:271 [A] Ak:132 [ARG] A2:383 [C] ❌ 7O7Y_A2:383 no longer at interface
q:64 [GLN] a:193 [C] Ak:129 [GLY] A2:291 [U] ❌ 7O7Y_Ak:129, 7O7Y_A2:291 no longer at interface
q:30 [TYR] a:653 [G] Ak:93 [LEU] A2:866 [A] ❌ 7O7Y_Ak:93, 7O7Y_A2:866 no longer at interface
q:38 [LYS] a:594 [C] Ak:101 [ARG] A2:683 [U] ❌ 7O7Y_A2:683 no longer at interface
q:39 [ARG] a:605 [G] Ak:102 [PHE] A2:803 [A] ❌ 7O7Y_Ak:102, 7O7Y_A2:803 no longer at interface
q:38 [LYS] a:885 [A] Ak:101 [ARG] A2:1158 [G] ❌ 6S0X_a:885 no longer at interface
q:41 [LYS] a:593 [G] Ak:104 [LYS] A2:682 [PSU] ❌ 6S0X_q:41, 6S0X_a:593 no longer at interface
q:41 [LYS] a:592 [G] Ak:104 [LYS] A2:681 [G] ❌ 6S0X_q:41, 6S0X_a:592 no longer at interface
q:42 [TYR] a:246 [G] Ak:105 [ARG] A2:356 [G] ❌ 6S0X_a:246 no longer at interface
q:42 [TYR] a:247 [C] Ak:105 [ARG] A2:357 [C] ❌ 6S0X_a:247 no longer at interface
q:43 [SER] a:287 [A] Ak:106 [HIS] A2:399 [A] ❌ 6S0X_a:287 no longer at interface
q:44 [LYS] a:246 [G] Ak:107 [LYS] A2:356 [G] ❌ 6S0X_a:246 no longer at interface
q:47 [LYS] a:261 [U] Ak:110 [SER] A2:373 [U] ❌ 6S0X_a:261 no longer at interface
q:70 [SER] a:261 [U] Ak:135 [SER] A2:373 [U] ❌ 6S0X_a:261 no longer at interface
q:71 [ALA] a:261 [U] Ak:136 [LYS] A2:373 [U] ❌ 6S0X_a:261 no longer at interface
q:72 [THR] a:261 [U] Ak:137 [THR] A2:373 [U] ❌ 6S0X_a:261 no longer at interface
q:8 [LYS] a:124 [U] Ak:71 [ARG] A2:108 [G] ❌ 6S0X_a:124 no longer at interface
q:8 [LYS] a:643 [A] Ak:71 [ARG] A2:856 [G] ❌ 6S0X_a:643 no longer at interface
q:18 [LYS] a:282 [A] Ak:81 [LYS] A2:394 [U] ❌ 6S0X_a:282 no longer at interface
q:18 [LYS] a:283 [G] Ak:81 [LYS] A2:395 [G] ❌ 6S0X_a:283 no longer at interface
q:19 [MET] a:261 [U] Ak:82 [MET] A2:373 [U] ❌ 6S0X_a:261 no longer at interface
q:19 [MET] a:283 [G] Ak:82 [MET] A2:395 [G] ❌ 6S0X_a:283 no longer at interface
q:20 [ASP] a:281 [A] Ak:83 [GLN] A2:393 [A] ❌ 6S0X_a:281 no longer at interface
q:20 [ASP] a:280 [C] Ak:83 [GLN] A2:392 [C] ❌ 6S0X_a:280 no longer at interface
q:21 [LYS] a:264 [U] Ak:84 [ARG] A2:376 [U] ❌ 6S0X_a:264 no longer at interface
q:29 [THR] a:246 [G] Ak:92 [TYR] A2:356 [G] ❌ 6S0X_q:29, 6S0X_a:246 no longer at interface
q:31 [LYS] a:246 [G] Ak:94 [HIS] A2:356 [G] ❌ 6S0X_q:31, 6S0X_a:246 no longer at interface
q:31 [LYS] a:247 [C] Ak:94 [HIS] A2:357 [C] ❌ 6S0X_q:31, 6S0X_a:247 no longer at interface
q:34 [LYS] a:641 [U] Ak:97 [ARG] A2:853 [G] ❌ 6S0X_a:641 no longer at interface
q:35 [LEU] a:571 [A] Ak:98 [LYS] A2:660 [G] ❌ 6S0X_a:571 no longer at interface
q:36 [TYR] a:571 [A] Ak:99 [TYR] A2:660 [G] ❌ 6S0X_a:571 no longer at interface
q:76 [ARG] a:194 [G] Ak:141 [ASN] A2:292 [G] ❌ 7O7Y_Ak:141 no longer at interface
q:76 [ARG] a:195 [C] Ak:141 [ASN] A2:293 [A] ❌ 7O7Y_Ak:141 no longer at interface
q:66 [THR] a:194 [G] Ak:131 [CYS] A2:292 [G] ❌ 7O7Y_Ak:131 no longer at interface
q:66 [THR] a:195 [C] Ak:131 [CYS] A2:293 [A] ❌ 7O7Y_Ak:131 no longer at interface
q:66 [THR] a:242 [C] Ak:131 [CYS] A2:352 [G] ❌ 7O7Y_Ak:131 no longer at interface
q:52 [ASN] a:195 [C] Ak:115 [PRO] A2:293 [A] ❌ 7O7Y_Ak:115 no longer at interface
q:64 [GLN] a:194 [G] Ak:129 [GLY] A2:292 [G] ❌ 7O7Y_Ak:129 no longer at interface
q:77 [LEU] a:195 [C] Ak:142 [VAL] A2:293 [A] ❌ 7O7Y_Ak:142 no longer at interface
q:51 [GLU] a:195 [C] Ak:114 [SER] A2:293 [A] ❌ 7O7Y_Ak:114 no longer at interface
q:37 [GLY] a:572 [U] Ak:100 [ASN] A2:661 [C] ❌ 6S0X_q:37 no longer at interface
q:41 [LYS] a:288 [C] Ak:104 [LYS] A2:400 [C] ❌ 6S0X_q:41 no longer at interface
q:24 [THR] a:284 [G] Ak:87 [VAL] A2:396 [G] ❌ 6S0X_q:24 no longer at interface
q:24 [THR] a:285 [C] Ak:87 [VAL] A2:397 [U] ❌ 6S0X_q:24 no longer at interface
q:26 [LEU] a:288 [C] Ak:89 [ARG] A2:400 [C] ❌ 6S0X_q:26 no longer at interface
q:27 [VAL] a:244 [G] Ak:90 [ARG] A2:354 [C] ❌ 6S0X_q:27 no longer at interface
q:27 [VAL] a:245 [C] Ak:90 [ARG] A2:355 [OMU] ❌ 6S0X_q:27 no longer at interface
q:28 [GLU] a:288 [C] Ak:91 [ASP] A2:400 [C] ❌ 6S0X_q:28 no longer at interface
q:29 [THR] a:245 [C] Ak:92 [TYR] A2:355 [OMU] ❌ 6S0X_q:29 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Nucleic acid-binding proteins 0.9 3.09 0.32 0.85 0.89 0.78 0.84 0.48 0.42 0.12 0.54


Other pairs involving 6S0X_q_a or 7O7Y_Ak_A2

Total number of entries: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1q_1a 7O7Y_Ak_A2 0.65 0.92 2.68 0.31 Nucleic acid-binding proteins compare
4Y4O_1q_1a 6S0X_q_a 0.46 0.94 3.18 0.42 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
7K00_Q_A 7O7Y_Ak_A2 0.67 0.92 2.17 0.29 Nucleic acid-binding proteins compare
2VQE_Q_A 6S0X_q_a 0.48 0.94 3.14 0.42 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
2VQE_Q_A 7O7Y_Ak_A2 0.67 0.91 2.56 0.3 Nucleic acid-binding proteins compare
6S0X_q_a 7K00_Q_A 0.54 0.96 3.12 0.44 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7RYG_q_a 0.59 0.97 1.98 0.51 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7O7Y_Ak_A2 0.48 0.9 3.09 0.32 Nucleic acid-binding proteins compare