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All interfaces > All interologs > Interface groups > group93 > 7K00_Q_A

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_Q
7K00_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Q:4 [LYS] A:637 [C] 3.89 A:601 [G] 68.66
Q:6 [ARG] A:126 [G] 4.97 A:235 [C] 75.1
Q:6 [ARG] A:127 [G] 3.05 A:234 [C] 75.1
Q:6 [ARG] A:635 [A] 3.6 A:603 [U] 75.1
Q:6 [ARG] A:636 [U] 3.59 A:602 [A] 75.1
Q:14 [SER] A:275 [G] 4.57 A:249 [U] 82.82
Q:14 [SER] A:276 [G] 2.55 A:248 [C] 82.82
Q:16 [LYS] A:275 [G] 3.42 A:249 [U] 73.23
Q:16 [LYS] A:276 [G] 4.07 A:248 [C] 73.23
Q:17 [MET] A:253 [A] 3.35 A:273 [U] 75.62
Q:17 [MET] A:254 [G] 3.37 A:272 [C] 75.62
Q:17 [MET] A:275 [G] 3.42 A:249 [U] 75.62
Q:17 [MET] A:276 [G] 3.79 A:248 [C] 75.62
Q:18 [GLU] A:254 [G] 2.73 A:272 [C] sugar:BB 50.59
Q:18 [GLU] A:255 [G] 3.02 A:271 [C] 50.59
Q:19 [LYS] A:254 [G] 4.84 A:272 [C] 80.42
Q:19 [LYS] A:255 [G] 3.53 A:271 [C] 80.42
Q:19 [LYS] A:256 [U] 2.99 A:270 [A] 80.42
Q:20 [SER] A:254 [G] 3.12 A:272 [C] sugar:SC 91.52
Q:20 [SER] A:255 [G] 4.32 A:271 [C] 91.52
Q:22 [VAL] A:276 [G] 3.71 A:248 [C] 68.6
Q:22 [VAL] A:277 [C] 3.2 A:247 [G] 68.6
Q:27 [ARG] A:236 [A] 4.9 A:125 [U] 65.29
Q:27 [ARG] A:237 [G] 3.02 A:124 [C] 65.29
Q:27 [ARG] A:238 [A] 4.42 A:123 [U] 65.29
Q:28 [PHE] A:596 [A] 4.59 A:644 [U] 0.13
Q:28 [PHE] A:597 [G] 3.42 A:643 [C] 0.13
Q:33 [ILE] A:564 [C] 3.75 67.09
Q:34 [TYR] A:564 [C] 3.4 78.39
Q:36 [LYS] A:585 [G] 3.02 A:756 [C] sugar:SC 88.75
Q:36 [LYS] A:586 [C] 3.83 A:755 [G] 88.75
Q:36 [LYS] A:879 [C] 3.59 A:821 [G] 88.75
Q:37 [PHE] A:586 [C] 4.54 A:755 [G] 0.0
Q:37 [PHE] A:597 [G] 3.37 A:643 [C] 0.0
Q:37 [PHE] A:598 [U] 3.76 A:640 [A] 0.0
Q:39 [LYS] A:280 [C] 3.77 42.68
Q:39 [LYS] A:585 [G] 3.67 A:756 [C] 42.68
Q:40 [ARG] A:280 [C] 2.64 sugar:SC base/AA stacks 66.19
Q:41 [THR] A:237 [G] 4.67 A:124 [C] 63.37
Q:41 [THR] A:280 [C] 2.6 base:BB, base:BB, base:SC, base:SC 63.37
Q:42 [THR] A:236 [A] 3.66 A:125 [U] 69.79
Q:42 [THR] A:237 [G] 3.13 A:124 [C] 69.79
Q:43 [LYS] A:236 [A] 4.82 A:125 [U] 78.96
Q:43 [LYS] A:277 [C] 3.5 A:247 [G] 78.96
Q:43 [LYS] A:278 [G] 3.03 A:279 [A] 78.96
Q:44 [LEU] A:235 [C] 4.21 A:126 [G] 47.13
Q:44 [LEU] A:236 [A] 3.73 A:125 [U] 47.13
Q:45 [HIS] A:253 [A] 4.71 A:273 [U] 38.91
Q:45 [HIS] A:276 [G] 2.91 A:248 [C] 38.91
Q:45 [HIS] A:277 [C] 2.76 A:247 [G] 38.91
Q:47 [HIS] A:255 [G] 4.49 A:271 [C] 91.13
Q:63 [GLU] A:127 [G] 2.88 A:234 [C] base:SC 63.4
Q:63 [GLU] A:128 [G] 4.43 A:233 [C] 63.4
Q:63 [GLU] A:234 [C] 4.11 A:127 [G] 63.4
Q:63 [GLU] A:235 [C] 3.43 A:126 [G] 63.4
Q:64 [CYS] A:234 [C] 4.78 A:127 [G] 63.37
Q:65 [ARG] A:129 [A] 3.83 A:232 [G] 84.4
Q:65 [ARG] A:130 [A] 3.21 84.4
Q:65 [ARG] A:264 [C] 3.36 84.4
Q:65 [ARG] A:265 [G] 2.94 A:260 [G] 84.4
Q:66 [PRO] A:130 [A] 3.4 86.13
Q:66 [PRO] A:233 [C] 4.98 A:128 [G] 86.13
Q:66 [PRO] A:234 [C] 3.57 A:127 [G] 86.13
Q:66 [PRO] A:264 [C] 2.4 sugar:BB 86.13
Q:66 [PRO] A:265 [G] 3.45 A:260 [G] 86.13
Q:67 [LEU] A:255 [G] 4.17 A:271 [C] 66.76
Q:67 [LEU] A:264 [C] 4.53 66.76
Q:67 [LEU] A:265 [G] 3.57 A:260 [G] 66.76
Q:67 [LEU] A:266 [G] 4.21 66.76
Q:68 [SER] A:254 [G] 2.82 A:272 [C] 99.0
Q:68 [SER] A:255 [G] 3.41 A:271 [C] 99.0
Q:68 [SER] A:265 [G] 3.26 A:260 [G] 99.0
Q:68 [SER] A:266 [G] 4.5 99.0
Q:68 [SER] A:267 [C] 4.83 A:259 [G] 99.0
Q:69 [LYS] A:235 [C] 4.79 A:126 [G] 82.36
Q:69 [LYS] A:252 [U] 4.38 A:274 [A] 82.36
Q:69 [LYS] A:253 [A] 2.46 A:273 [U] 82.36
Q:69 [LYS] A:254 [G] 3.18 A:272 [C] 82.36
Q:69 [LYS] A:265 [G] 3.39 A:260 [G] 82.36
Q:69 [LYS] A:266 [G] 3.91 82.36
Q:69 [LYS] A:267 [C] 3.78 A:259 [G] 82.36
Q:70 [THR] A:253 [A] 3.72 A:273 [U] 64.95
Q:70 [THR] A:254 [G] 2.81 A:272 [C] 64.95
Q:71 [LYS] A:254 [G] 3.43 A:272 [C] 93.38
Q:71 [LYS] A:255 [G] 3.08 A:271 [C] 93.38
Q:72 [SER] A:234 [C] 3.14 A:127 [G] sugar:SC 70.42
Q:72 [SER] A:235 [C] 3.46 A:126 [G] 70.42
Q:73 [TRP] A:235 [C] 3.31 A:126 [G] sugar:SC 64.35
Q:73 [TRP] A:236 [A] 4.93 A:125 [U] 64.35

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group93 7K00_Q_A Q: 30s ribosomal protein s17, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) P0AG63 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_Q_A 7K00_Q_A 0.85 0.96 1.18 0.5 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
4Y4O_1q_1a 7K00_Q_A 0.77 0.97 2.06 0.5 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
7K00_Q_A 7O7Y_Ak_A2 0.67 0.92 2.17 0.29 Nucleic acid-binding proteins compare
7K00_Q_A 7RYG_q_a 0.95 0.93 2.32 0.71 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare
6S0X_q_a 7K00_Q_A 0.54 0.96 3.12 0.44 Nucleic acid-binding proteins Bacterial small subunit ribosomal RNA compare