Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7O7Y_Ak
|
7O7Y_A2
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Ak:7 [GLU] | A2:375 [G] | 3.82 | A2:391 [C] | 31.96 | ||
| Ak:7 [GLU] | A2:376 [U] | 3.3 | A2:390 [A] | 31.96 | ||
| Ak:8 [ARG] | A2:391 [C] | 2.56 | A2:375 [G] | sugar:SC, sugar:SC | 28.78 | |
| Ak:8 [ARG] | A2:392 [C] | 4.37 | A2:374 [G] | 28.78 | ||
| Ak:9 [ALA] | A2:376 [U] | 4.51 | A2:390 [A] | 51.13 | ||
| Ak:9 [ALA] | A2:377 [A] | 3.62 | A2:389 [U] | 51.13 | ||
| Ak:11 [GLN] | A2:376 [U] | 3.37 | A2:390 [A] | 58.31 | ||
| Ak:11 [GLN] | A2:377 [A] | 4.1 | A2:389 [U] | 58.31 | ||
| Ak:14 [PRO] | A2:295 [U] | 3.89 | 25.21 | |||
| Ak:15 [THR] | A2:295 [U] | 3.42 | 15.66 | |||
| Ak:17 [PHE] | A2:221 [A] | 4.75 | A2:301 [U] | 29.33 | ||
| Ak:17 [PHE] | A2:222 [U] | 3.23 | A2:300 [A] | 29.33 | ||
| Ak:17 [PHE] | A2:223 [C] | 3.75 | A2:299 [G] | 29.33 | ||
| Ak:20 [LYS] | A2:223 [C] | 4.94 | A2:299 [G] | 44.57 | ||
| Ak:36 [TYR] | A2:294 [C] | 3.99 | A2:290 [G] | 5.57 | ||
| Ak:36 [TYR] | A2:295 [U] | 2.52 | 5.57 | |||
| Ak:38 [LYS] | A2:293 [A] | 4.05 | 70.65 | |||
| Ak:38 [LYS] | A2:294 [C] | 4.16 | A2:290 [G] | 70.65 | ||
| Ak:38 [LYS] | A2:295 [U] | 4.7 | 70.65 | |||
| Ak:39 [ASN] | A2:292 [G] | 4.6 | 58.82 | |||
| Ak:39 [ASN] | A2:293 [A] | 2.82 | sugar:BB | 58.82 | ||
| Ak:39 [ASN] | A2:294 [C] | 4.9 | A2:290 [G] | 58.82 | ||
| Ak:40 [ILE] | A2:292 [G] | 2.4 | base:BB | 65.39 | ||
| Ak:40 [ILE] | A2:293 [A] | 3.39 | 65.39 | |||
| Ak:41 [GLY] | A2:292 [G] | 3.17 | 70.88 | |||
| Ak:41 [GLY] | A2:293 [A] | 3.56 | 70.88 | |||
| Ak:42 [LEU] | A2:292 [G] | 3.29 | sugar:BB | 40.31 | ||
| Ak:45 [LYS] | A2:798 [C] | 4.0 | A2:745 [G] | 39.48 | ||
| Ak:48 [LYS] | A2:905 [A] | 2.48 | A2:883 [U] | sugar:SC | 12.02 | |
| Ak:57 [ASP] | A2:376 [U] | 3.83 | A2:390 [A] | 98.95 | ||
| Ak:58 [LYS] | A2:376 [U] | 4.08 | A2:390 [A] | 36.56 | ||
| Ak:58 [LYS] | A2:377 [A] | 2.99 | A2:389 [U] | 36.56 | ||
| Ak:59 [LYS] | A2:374 [G] | 4.82 | A2:392 [C] | 64.76 | ||
| Ak:59 [LYS] | A2:375 [G] | 2.7 | A2:391 [C] | 64.76 | ||
| Ak:59 [LYS] | A2:376 [U] | 2.7 | A2:390 [A] | 64.76 | ||
| Ak:63 [THR] | A2:295 [U] | 4.55 | 84.64 | |||
| Ak:64 [GLY] | A2:295 [U] | 3.45 | 77.65 | |||
| Ak:65 [ASN] | A2:295 [U] | 3.26 | base/AA stacks | 44.53 | ||
| Ak:66 [VAL] | A2:114 [G] | 4.97 | 60.33 | |||
| Ak:67 [SER] | A2:113 [G] | 2.88 | A2:291 [U] | sugar:SC | 53.9 | |
| Ak:67 [SER] | A2:114 [G] | 3.4 | 53.9 | |||
| Ak:67 [SER] | A2:293 [A] | 3.15 | 53.9 | |||
| Ak:68 [ILE] | A2:292 [G] | 2.67 | base:BB, base:BB | 62.77 | ||
| Ak:68 [ILE] | A2:293 [A] | 3.71 | 62.77 | |||
| Ak:69 [ARG] | A2:111 [A] | 3.25 | A2:351 [C] | 87.34 | ||
| Ak:69 [ARG] | A2:112 [U] | 4.2 | A2:350 [A] | 87.34 | ||
| Ak:69 [ARG] | A2:113 [G] | 3.75 | A2:291 [U] | 87.34 | ||
| Ak:69 [ARG] | A2:114 [G] | 2.71 | base:SC | 87.34 | ||
| Ak:69 [ARG] | A2:292 [G] | 3.73 | 87.34 | |||
| Ak:69 [ARG] | A2:293 [A] | 4.47 | 87.34 | |||
| Ak:70 [GLY] | A2:110 [U] | 4.19 | A2:352 [G] | 83.12 | ||
| Ak:70 [GLY] | A2:111 [A] | 3.9 | A2:351 [C] | 83.12 | ||
| Ak:71 [ARG] | A2:108 [G] | 4.95 | A2:354 [C] | 61.18 | ||
| Ak:71 [ARG] | A2:109 [PSU] | 2.83 | A2:353 [U] | base:SC, sugar:SC | 61.18 | |
| Ak:71 [ARG] | A2:110 [U] | 3.93 | A2:352 [G] | 61.18 | ||
| Ak:71 [ARG] | A2:353 [U] | 2.67 | A2:109 [PSU] | base:SC | 61.18 | |
| Ak:71 [ARG] | A2:354 [C] | 3.23 | A2:108 [G] | base/AA stacks | 61.18 | |
| Ak:71 [ARG] | A2:856 [G] | 2.89 | A2:809 [A] | sugar:SC | 61.18 | |
| Ak:73 [LEU] | A2:354 [C] | 3.79 | A2:108 [G] | 46.93 | ||
| Ak:79 [LYS] | A2:396 [G] | 3.16 | A2:366 [C] | 85.81 | ||
| Ak:79 [LYS] | A2:397 [U] | 2.66 | A2:365 [A] | 85.81 | ||
| Ak:81 [LYS] | A2:394 [U] | 4.9 | A2:372 [A] | 84.1 | ||
| Ak:81 [LYS] | A2:395 [G] | 3.29 | A2:367 [U] | 84.1 | ||
| Ak:81 [LYS] | A2:396 [G] | 4.69 | A2:366 [C] | 84.1 | ||
| Ak:82 [MET] | A2:373 [U] | 2.97 | A2:393 [A] | 76.86 | ||
| Ak:82 [MET] | A2:374 [G] | 3.31 | A2:392 [C] | 76.86 | ||
| Ak:82 [MET] | A2:395 [G] | 3.23 | A2:367 [U] | 76.86 | ||
| Ak:82 [MET] | A2:396 [G] | 3.89 | A2:366 [C] | 76.86 | ||
| Ak:83 [GLN] | A2:374 [G] | 2.54 | A2:392 [C] | base:SC, sugar:BB | 37.09 | |
| Ak:83 [GLN] | A2:375 [G] | 3.26 | A2:391 [C] | 37.09 | ||
| Ak:83 [GLN] | A2:392 [C] | 4.31 | A2:374 [G] | 37.09 | ||
| Ak:83 [GLN] | A2:393 [A] | 3.86 | A2:373 [U] | 37.09 | ||
| Ak:84 [ARG] | A2:375 [G] | 4.71 | A2:391 [C] | 62.94 | ||
| Ak:84 [ARG] | A2:376 [U] | 4.4 | A2:390 [A] | 62.94 | ||
| Ak:85 [THR] | A2:374 [G] | 3.11 | A2:392 [C] | 87.44 | ||
| Ak:85 [THR] | A2:375 [G] | 4.07 | A2:391 [C] | 87.44 | ||
| Ak:87 [VAL] | A2:396 [G] | 3.4 | A2:366 [C] | 66.81 | ||
| Ak:87 [VAL] | A2:397 [U] | 3.69 | A2:365 [A] | 66.81 | ||
| Ak:89 [ARG] | A2:400 [C] | 3.06 | base:SC | 51.2 | ||
| Ak:90 [ARG] | A2:354 [C] | 3.77 | A2:108 [G] | 59.84 | ||
| Ak:90 [ARG] | A2:355 [OMU] | 3.12 | A2:107 [A] | 59.84 | ||
| Ak:91 [ASP] | A2:400 [C] | 4.66 | 44.31 | |||
| Ak:92 [TYR] | A2:355 [OMU] | 3.68 | A2:107 [A] | 52.26 | ||
| Ak:92 [TYR] | A2:356 [G] | 2.88 | A2:106 [C] | 52.26 | ||
| Ak:94 [HIS] | A2:356 [G] | 3.5 | A2:106 [C] | 34.85 | ||
| Ak:94 [HIS] | A2:357 [C] | 4.2 | A2:104 [A] | 34.85 | ||
| Ak:94 [HIS] | A2:854 [C] | 4.55 | 34.85 | |||
| Ak:95 [TYR] | A2:854 [C] | 4.64 | 42.67 | |||
| Ak:97 [ARG] | A2:421 [G] | 4.84 | A2:662 [U] | 48.62 | ||
| Ak:97 [ARG] | A2:422 [G] | 3.72 | A2:417 [U] | 48.62 | ||
| Ak:97 [ARG] | A2:853 [G] | 2.92 | 48.62 | |||
| Ak:98 [LYS] | A2:421 [G] | 4.3 | A2:662 [U] | 94.24 | ||
| Ak:98 [LYS] | A2:422 [G] | 3.25 | A2:417 [U] | 94.24 | ||
| Ak:98 [LYS] | A2:423 [U] | 2.84 | A2:416 [A] | 94.24 | ||
| Ak:98 [LYS] | A2:660 [G] | 3.11 | A2:1166 [G] | 94.24 | ||
| Ak:98 [LYS] | A2:661 [C] | 3.15 | 94.24 | |||
| Ak:99 [TYR] | A2:660 [G] | 4.77 | A2:1166 [G] | 87.28 | ||
| Ak:99 [TYR] | A2:661 [C] | 3.01 | 87.28 | |||
| Ak:100 [ASN] | A2:661 [C] | 3.77 | 65.46 | |||
| Ak:101 [ARG] | A2:661 [C] | 3.13 | sugar:SC | 99.0 | ||
| Ak:101 [ARG] | A2:1158 [G] | 4.96 | 99.0 | |||
| Ak:104 [LYS] | A2:400 [C] | 3.43 | 77.05 | |||
| Ak:104 [LYS] | A2:681 [G] | 4.96 | A2:1026 [U] | 77.05 | ||
| Ak:104 [LYS] | A2:682 [PSU] | 3.13 | A2:1025 [A] | 77.05 | ||
| Ak:105 [ARG] | A2:356 [G] | 2.88 | A2:106 [C] | 75.06 | ||
| Ak:105 [ARG] | A2:357 [C] | 2.9 | A2:104 [A] | 75.06 | ||
| Ak:105 [ARG] | A2:400 [C] | 3.25 | 75.06 | |||
| Ak:106 [HIS] | A2:398 [G] | 3.02 | A2:399 [A] | 68.52 | ||
| Ak:106 [HIS] | A2:399 [A] | 3.24 | A2:398 [G] | 68.52 | ||
| Ak:106 [HIS] | A2:400 [C] | 2.92 | base:BB, base:SC | 68.52 | ||
| Ak:107 [LYS] | A2:355 [OMU] | 3.06 | A2:107 [A] | 83.04 | ||
| Ak:107 [LYS] | A2:356 [G] | 3.24 | A2:106 [C] | 83.04 | ||
| Ak:108 [ASN] | A2:397 [U] | 3.09 | A2:365 [A] | 68.43 | ||
| Ak:108 [ASN] | A2:398 [G] | 2.71 | A2:399 [A] | 68.43 | ||
| Ak:109 [MET] | A2:354 [C] | 3.6 | A2:108 [G] | 60.56 | ||
| Ak:109 [MET] | A2:397 [U] | 4.93 | A2:365 [A] | 60.56 | ||
| Ak:110 [SER] | A2:373 [U] | 4.87 | A2:393 [A] | 47.6 | ||
| Ak:110 [SER] | A2:396 [G] | 4.61 | A2:366 [C] | 47.6 | ||
| Ak:110 [SER] | A2:397 [U] | 4.95 | A2:365 [A] | 47.6 | ||
| Ak:112 [HIS] | A2:375 [G] | 4.33 | A2:391 [C] | 92.85 | ||
| Ak:130 [GLU] | A2:110 [U] | 4.66 | A2:352 [G] | 89.32 | ||
| Ak:130 [GLU] | A2:111 [A] | 4.46 | A2:351 [C] | 89.32 | ||
| Ak:130 [GLU] | A2:352 [G] | 2.79 | A2:110 [U] | base:SC | 89.32 | |
| Ak:130 [GLU] | A2:353 [U] | 3.03 | A2:109 [PSU] | 89.32 | ||
| Ak:132 [ARG] | A2:114 [G] | 3.52 | 95.9 | |||
| Ak:132 [ARG] | A2:384 [G] | 3.09 | 95.9 | |||
| Ak:132 [ARG] | A2:385 [U] | 3.18 | A2:381 [G] | 95.9 | ||
| Ak:133 [PRO] | A2:114 [G] | 4.27 | 92.07 | |||
| Ak:133 [PRO] | A2:352 [G] | 4.01 | A2:110 [U] | 92.07 | ||
| Ak:133 [PRO] | A2:384 [G] | 2.76 | sugar:BB | 92.07 | ||
| Ak:133 [PRO] | A2:385 [U] | 3.2 | A2:381 [G] | 92.07 | ||
| Ak:134 [LEU] | A2:375 [G] | 4.18 | A2:391 [C] | 81.1 | ||
| Ak:134 [LEU] | A2:384 [G] | 4.95 | 81.1 | |||
| Ak:134 [LEU] | A2:385 [U] | 3.78 | A2:381 [G] | 81.1 | ||
| Ak:134 [LEU] | A2:386 [G] | 4.61 | 81.1 | |||
| Ak:135 [SER] | A2:373 [U] | 4.9 | A2:393 [A] | 98.13 | ||
| Ak:135 [SER] | A2:374 [G] | 2.58 | A2:392 [C] | 98.13 | ||
| Ak:135 [SER] | A2:375 [G] | 3.37 | A2:391 [C] | 98.13 | ||
| Ak:135 [SER] | A2:385 [U] | 3.05 | A2:381 [G] | 98.13 | ||
| Ak:135 [SER] | A2:386 [G] | 4.93 | 98.13 | |||
| Ak:135 [SER] | A2:387 [C] | 4.76 | A2:379 [U] | 98.13 | ||
| Ak:136 [LYS] | A2:373 [U] | 2.81 | A2:393 [A] | 99.0 | ||
| Ak:136 [LYS] | A2:374 [G] | 3.41 | A2:392 [C] | 99.0 | ||
| Ak:136 [LYS] | A2:385 [U] | 3.33 | A2:381 [G] | 99.0 | ||
| Ak:136 [LYS] | A2:386 [G] | 3.87 | 99.0 | |||
| Ak:136 [LYS] | A2:387 [C] | 3.57 | A2:379 [U] | 99.0 | ||
| Ak:137 [THR] | A2:373 [U] | 3.11 | A2:393 [A] | 87.44 | ||
| Ak:137 [THR] | A2:374 [G] | 2.44 | A2:392 [C] | 87.44 | ||
| Ak:138 [VAL] | A2:374 [G] | 3.84 | A2:392 [C] | 78.54 | ||
| Ak:139 [ARG] | A2:352 [G] | 3.43 | A2:110 [U] | 69.12 | ||
| Ak:139 [ARG] | A2:353 [U] | 3.16 | A2:109 [PSU] | 69.12 | ||
| Ak:140 [PHE] | A2:353 [U] | 3.33 | A2:109 [PSU] | 82.09 | ||
| Ak:140 [PHE] | A2:354 [C] | 3.98 | A2:108 [G] | 82.09 | ||
| Ak:149 [ALA] | A2:868 [OMG] | 3.54 | 1.01 | |||
| Ak:149 [ALA] | A2:869 [G] | 4.74 | 1.01 | |||
| Ak:150 [GLY] | A2:869 [G] | 4.74 | 0.0 | |||
| Ak:152 [LYS] | A2:874 [G] | 3.81 | 19.5 | |||
| Ak:153 [LYS] | A2:869 [G] | 3.55 | 41.7 | |||
| Ak:153 [LYS] | A2:870 [A] | 3.91 | 41.7 | |||
| Ak:153 [LYS] | A2:871 [A] | 3.45 | 41.7 | |||
| Ak:153 [LYS] | A2:872 [U] | 4.43 | 41.7 | |||
| Ak:155 [PHE] | A2:872 [U] | 3.18 | base:BB | 41.82 | ||
| Ak:156 [GLN] | A2:872 [U] | 3.11 | base/AA stacks | 37.65 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group93 | 7O7Y_Ak_A2 | Ak: 40s ribosomal protein s11, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) | G1TRM4 | Nucleic acid-binding proteins | Eukaryotic small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1q_1a | 7O7Y_Ak_A2 | 0.65 | 0.92 | 2.68 | 0.31 | Nucleic acid-binding proteins | compare | |
| 7K00_Q_A | 7O7Y_Ak_A2 | 0.67 | 0.92 | 2.17 | 0.29 | Nucleic acid-binding proteins | compare | |
| 2VQE_Q_A | 7O7Y_Ak_A2 | 0.67 | 0.91 | 2.56 | 0.3 | Nucleic acid-binding proteins | compare | |
| 6S0X_q_a | 7O7Y_Ak_A2 | 0.48 | 0.9 | 3.09 | 0.32 | Nucleic acid-binding proteins | compare |