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All interfaces > All interologs > Interface groups > group94 > 2VQE_R_A

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

2VQE_R
2VQE_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:47 [THR] A:718 [G] 4.9 0.0
R:48 [GLY] A:718 [G] 4.65 0.0
R:48 [GLY] A:719 [C] 4.15 0.0
R:49 [LYS] A:718 [G] 3.65 0.0
R:49 [LYS] A:719 [C] 3.37 0.0
R:50 [ILE] A:719 [C] 2.57 base:BB, sugar:BB 0.0
R:50 [ILE] A:720 [C] 3.58 0.0
R:51 [LEU] A:719 [C] 4.71 0.0
R:51 [LEU] A:720 [C] 3.97 0.0
R:52 [PRO] A:720 [C] 3.93 0.0
R:52 [PRO] A:721 [G] 4.74 0.0
R:53 [ARG] A:720 [C] 4.65 0.0
R:53 [ARG] A:721 [G] 3.32 0.0
R:53 [ARG] A:834 [C] 3.97 A:852 [G] 0.0
R:60 [GLY] A:834 [C] 4.59 A:852 [G] 0.0
R:60 [GLY] A:835 [U] 4.24 A:851 [G] 0.0
R:61 [LYS] A:662 [G] 4.22 A:743 [U] 0.0
R:61 [LYS] A:663 [A] 3.77 A:742 [G] 0.0
R:61 [LYS] A:835 [U] 3.39 A:851 [G] 0.0
R:61 [LYS] A:836 [G] 2.61 A:850 [U] 0.0
R:63 [GLN] A:720 [C] 3.57 0.0
R:63 [GLN] A:721 [G] 4.03 0.0
R:64 [ARG] A:663 [A] 3.18 A:742 [G] 0.0
R:64 [ARG] A:664 [G] 2.82 A:741 [G] 0.0
R:64 [ARG] A:665 [A] 4.04 A:724 [G] 0.0
R:64 [ARG] A:834 [C] 3.55 A:852 [G] 0.0
R:64 [ARG] A:835 [U] 2.71 A:851 [G] 0.0
R:67 [ALA] A:720 [C] 3.69 0.0
R:68 [LYS] A:735 [C] 4.28 A:671 [G] 0.0
R:68 [LYS] A:736 [C] 3.04 A:670 [G] 0.0
R:71 [LYS] A:719 [C] 3.65 0.0
R:71 [LYS] A:720 [C] 2.73 base:SC 0.0
R:71 [LYS] A:721 [G] 3.97 0.0
R:71 [LYS] A:734 [G] 3.66 A:672 [U] 0.0
R:71 [LYS] A:735 [C] 3.88 A:671 [G] 0.0
R:72 [ARG] A:735 [C] 4.05 A:671 [G] 0.0
R:72 [ARG] A:736 [C] 2.91 A:670 [G] 0.0
R:72 [ARG] A:737 [A] 4.19 A:669 [U] 0.0
R:74 [ARG] A:718 [G] 2.77 0.0
R:74 [ARG] A:719 [C] 2.89 base:SC, base:SC 0.0
R:75 [ILE] A:672 [U] 4.86 A:734 [G] 0.0
R:75 [ILE] A:673 [G] 3.7 A:717 [C] 0.0
R:75 [ILE] A:734 [G] 3.56 A:672 [U] 0.0
R:75 [ILE] A:735 [C] 3.25 A:671 [G] 0.0
R:81 [PHE] A:673 [G] 3.14 A:717 [C] 0.0
R:81 [PHE] A:674 [G] 3.44 A:716 [A] 0.0
R:81 [PHE] A:718 [G] 2.81 base:BB, base:BB 0.0
R:82 [THR] A:675 [A] 4.51 A:715 [A] 0.0
R:82 [THR] A:718 [G] 4.04 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group94 2VQE_R_A R: 30s ribosomal protein s18, Thermus thermophilus (natural) A: 16s rRNA, Thermus thermophilus (natural) Q5SLQ0 tri-helical Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_R_A 7RYG_r_a 0.87 0.92 1.92 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 4YBB_AR_AA 0.84 0.95 2.09 0.58 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 4Y4O_1r_1a 0.98 0.99 1.04 0.89 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 6S0X_r_a 0.74 0.95 2.55 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 7K00_R_A 0.89 0.96 1.37 0.63 tri-helical Bacterial small subunit ribosomal RNA compare