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All interfaces > All interologs > Interface groups > group94 > 2VQE_R_A vs 4Y4O_1r_1a

Interface analysis


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Common contacts -

2VQE_R
2VQE_A
4Y4O_1r
4Y4O_1a
Conserved?
R:61 [LYS] A:662 [G] 1r:61 [LYS] 1a:662 [G] ✔
R:61 [LYS] A:663 [A] 1r:61 [LYS] 1a:663 [A] ✔
R:61 [LYS] A:835 [U] 1r:61 [LYS] 1a:835 [U] ✔
R:61 [LYS] A:836 [G] 1r:61 [LYS] 1a:836 [G] ✔
R:68 [LYS] A:735 [C] 1r:68 [LYS] 1a:735 [C] ✔
R:68 [LYS] A:736 [C] 1r:68 [LYS] 1a:736 [C] ✔
R:53 [ARG] A:720 [C] 1r:53 [ARG] 1a:720 [C] ✔
R:53 [ARG] A:721 [G] 1r:53 [ARG] 1a:721 [G] ✔
R:53 [ARG] A:834 [C] 1r:53 [ARG] 1a:834 [C] ✔
R:81 [PHE] A:673 [G] 1r:81 [PHE] 1a:673 [G] ✔
R:81 [PHE] A:674 [G] 1r:81 [PHE] 1a:674 [G] ✔
R:81 [PHE] A:718 [G] 1r:81 [PHE] 1a:718 [G] ✔
R:75 [ILE] A:673 [G] 1r:75 [ILE] 1a:673 [G] ✔
R:75 [ILE] A:734 [G] 1r:75 [ILE] 1a:734 [G] ✔
R:75 [ILE] A:735 [C] 1r:75 [ILE] 1a:735 [C] ✔
R:48 [GLY] A:719 [C] 1r:48 [GLY] 1a:719 [C] ✔
R:64 [ARG] A:663 [A] 1r:64 [ARG] 1a:663 [A] ✔
R:64 [ARG] A:664 [G] 1r:64 [ARG] 1a:664 [G] ✔
R:64 [ARG] A:665 [A] 1r:64 [ARG] 1a:665 [A] ✔
R:64 [ARG] A:834 [C] 1r:64 [ARG] 1a:834 [C] ✔
R:64 [ARG] A:835 [U] 1r:64 [ARG] 1a:835 [U] ✔
R:71 [LYS] A:719 [C] 1r:71 [LYS] 1a:719 [C] ✔
R:71 [LYS] A:720 [C] 1r:71 [LYS] 1a:720 [C] ✔
R:71 [LYS] A:721 [G] 1r:71 [LYS] 1a:721 [G] ✔
R:71 [LYS] A:734 [G] 1r:71 [LYS] 1a:734 [G] ✔
R:71 [LYS] A:735 [C] 1r:71 [LYS] 1a:735 [C] ✔
R:67 [ALA] A:720 [C] 1r:67 [ALA] 1a:720 [C] ✔
R:60 [GLY] A:834 [C] 1r:60 [ALA] 1a:834 [C] ✔
R:60 [GLY] A:835 [U] 1r:60 [ALA] 1a:835 [U] ✔
R:50 [ILE] A:719 [C] 1r:50 [ILE] 1a:719 [C] ✔
R:50 [ILE] A:720 [C] 1r:50 [ILE] 1a:720 [C] ✔
R:74 [ARG] A:718 [G] 1r:74 [ARG] 1a:718 [G] ✔
R:74 [ARG] A:719 [C] 1r:74 [ARG] 1a:719 [C] ✔
R:51 [LEU] A:719 [C] 1r:51 [LEU] 1a:719 [C] ✔
R:51 [LEU] A:720 [C] 1r:51 [LEU] 1a:720 [C] ✔
R:52 [PRO] A:720 [C] 1r:52 [PRO] 1a:720 [C] ✔
R:49 [LYS] A:718 [G] 1r:49 [LYS] 1a:718 [G] ✔
R:49 [LYS] A:719 [C] 1r:49 [LYS] 1a:719 [C] ✔
R:82 [THR] A:675 [A] 1r:82 [THR] 1a:675 [A] ✔
R:82 [THR] A:718 [G] 1r:82 [THR] 1a:718 [G] ✔
R:63 [GLN] A:720 [C] 1r:63 [GLN] 1a:720 [C] ✔
R:63 [GLN] A:721 [G] 1r:63 [GLN] 1a:721 [G] ✔
R:72 [ARG] A:735 [C] 1r:72 [ARG] 1a:735 [C] ✔
R:72 [ARG] A:736 [C] 1r:72 [ARG] 1a:736 [C] ✔
R:72 [ARG] A:737 [A] 1r:72 [ARG] 1a:737 [A] ✔
R:48 [GLY] A:718 [G] 1r:48 [GLY] 1a:718 [G] ❌ 4Y4O_1r_1a
R:52 [PRO] A:721 [G] 1r:52 [PRO] 1a:721 [G] ❌ 4Y4O_1r_1a
R:75 [ILE] A:672 [U] 1r:75 [ILE] 1a:672 [U] ❌ 4Y4O_1a:672 no longer at interface
R:47 [THR] A:718 [G] 1r:47 [THR] 1a:718 [G] ❌ 4Y4O_1r:47 no longer at interface
R:65 [ILE] A:664 [G] 1r:65 [ILE] 1a:664 [G] ❌ 2VQE_R:65 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
tri-helical Bacterial small subunit ribosomal RNA 0.99 1.04 0.89 0.98 0.99 0.95 1.0 0.98 0.93 0.64 0.60


Other pairs involving 2VQE_R_A or 4Y4O_1r_1a

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_R_A 4Y4O_1r_1a 0.98 0.99 1.04 0.89 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 4YBB_AR_AA 0.84 0.95 2.09 0.58 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 4YBB_AR_AA 0.73 0.95 2.78 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 6S0X_r_a 0.74 0.95 2.55 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 6S0X_r_a 0.74 0.94 2.0 0.44 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 7K00_R_A 0.89 0.96 1.37 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7K00_R_A 0.88 0.98 0.79 0.68 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 7RYG_r_a 0.87 0.92 1.92 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7RYG_r_a 0.87 0.91 2.0 0.53 tri-helical Bacterial small subunit ribosomal RNA compare