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All interfaces > All interologs > Interface groups > group94 > 2VQE_R_A vs 4YBB_AR_AA

Interface analysis


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Common contacts -

2VQE_R
2VQE_A
4YBB_AR
4YBB_AA
Conserved?
R:61 [LYS] A:662 [G] AR:50 [LYS] AA:662 [U] ✔
R:61 [LYS] A:663 [A] AR:50 [LYS] AA:663 [A] ✔
R:61 [LYS] A:835 [U] AR:50 [LYS] AA:835 [U] ✔
R:61 [LYS] A:836 [G] AR:50 [LYS] AA:836 [G] ✔
R:68 [LYS] A:735 [C] AR:57 [ARG] AA:735 [C] ✔
R:68 [LYS] A:736 [C] AR:57 [ARG] AA:736 [C] ✔
R:53 [ARG] A:720 [C] AR:42 [SER] AA:720 [C] ✔
R:53 [ARG] A:721 [G] AR:42 [SER] AA:721 [G] ✔
R:75 [ILE] A:672 [U] AR:64 [TYR] AA:672 [U] ✔
R:75 [ILE] A:673 [G] AR:64 [TYR] AA:673 [A] ✔
R:75 [ILE] A:734 [G] AR:64 [TYR] AA:734 [G] ✔
R:75 [ILE] A:735 [C] AR:64 [TYR] AA:735 [C] ✔
R:48 [GLY] A:719 [C] AR:37 [GLY] AA:719 [C] ✔
R:64 [ARG] A:663 [A] AR:53 [ARG] AA:663 [A] ✔
R:64 [ARG] A:664 [G] AR:53 [ARG] AA:664 [G] ✔
R:64 [ARG] A:665 [A] AR:53 [ARG] AA:665 [A] ✔
R:64 [ARG] A:834 [C] AR:53 [ARG] AA:834 [U] ✔
R:64 [ARG] A:835 [U] AR:53 [ARG] AA:835 [U] ✔
R:71 [LYS] A:719 [C] AR:60 [LYS] AA:719 [C] ✔
R:71 [LYS] A:720 [C] AR:60 [LYS] AA:720 [C] ✔
R:71 [LYS] A:721 [G] AR:60 [LYS] AA:721 [G] ✔
R:71 [LYS] A:734 [G] AR:60 [LYS] AA:734 [G] ✔
R:71 [LYS] A:735 [C] AR:60 [LYS] AA:735 [C] ✔
R:67 [ALA] A:720 [C] AR:56 [ALA] AA:720 [C] ✔
R:60 [GLY] A:834 [C] AR:49 [ALA] AA:834 [U] ✔
R:60 [GLY] A:835 [U] AR:49 [ALA] AA:835 [U] ✔
R:50 [ILE] A:719 [C] AR:39 [ILE] AA:719 [C] ✔
R:50 [ILE] A:720 [C] AR:39 [ILE] AA:720 [C] ✔
R:74 [ARG] A:718 [G] AR:63 [ARG] AA:718 [A] ✔
R:74 [ARG] A:719 [C] AR:63 [ARG] AA:719 [C] ✔
R:51 [LEU] A:719 [C] AR:40 [VAL] AA:719 [C] ✔
R:51 [LEU] A:720 [C] AR:40 [VAL] AA:720 [C] ✔
R:52 [PRO] A:720 [C] AR:41 [PRO] AA:720 [C] ✔
R:52 [PRO] A:721 [G] AR:41 [PRO] AA:721 [G] ✔
R:49 [LYS] A:718 [G] AR:38 [LYS] AA:718 [A] ✔
R:49 [LYS] A:719 [C] AR:38 [LYS] AA:719 [C] ✔
R:82 [THR] A:675 [A] AR:70 [TYR] AA:675 [A] ✔
R:82 [THR] A:718 [G] AR:70 [TYR] AA:718 [A] ✔
R:63 [GLN] A:720 [C] AR:52 [GLN] AA:720 [C] ✔
R:63 [GLN] A:721 [G] AR:52 [GLN] AA:721 [G] ✔
R:72 [ARG] A:735 [C] AR:61 [ARG] AA:735 [C] ✔
R:72 [ARG] A:736 [C] AR:61 [ARG] AA:736 [C] ✔
R:72 [ARG] A:737 [A] AR:61 [ARG] AA:737 [C] ✔
R:53 [ARG] A:834 [C] AR:42 [SER] AA:834 [U] ❌ 4YBB_AR_AA
R:48 [GLY] A:718 [G] AR:37 [GLY] AA:718 [A] ❌ 4YBB_AR_AA
R:52 [PRO] A:719 [C] AR:41 [PRO] AA:719 [C] ❌ 2VQE_R_A
R:82 [THR] A:673 [G] AR:70 [TYR] AA:673 [A] ❌ 2VQE_R_A
R:82 [THR] A:674 [G] AR:70 [TYR] AA:674 [G] ❌ 2VQE_R_A
R:54 [ARG] A:722 [A] AR:43 [ARG] AA:722 [G] ❌ 2VQE_R:54, 2VQE_A:722 no longer at interface
R:47 [THR] A:718 [G] AR:36 [SER] AA:718 [A] ❌ 4YBB_AR:36 no longer at interface
R:54 [ARG] A:720 [C] AR:43 [ARG] AA:720 [C] ❌ 2VQE_R:54 no longer at interface
R:54 [ARG] A:721 [G] AR:43 [ARG] AA:721 [G] ❌ 2VQE_R:54 no longer at interface
R:65 [ILE] A:663 [A] AR:54 [GLN] AA:663 [A] ❌ 2VQE_R:65 no longer at interface
R:83 [GLU] A:718 [G] AR:71 [THR] AA:718 [A] ❌ 2VQE_R:83 no longer at interface
R:83 [GLU] A:675 [A] AR:71 [THR] AA:675 [A] ❌ 2VQE_R:83 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
tri-helical Bacterial small subunit ribosomal RNA 0.95 2.09 0.58 0.86 0.96 0.89 1.0 0.84 0.67 0.60 0.58


Other pairs involving 2VQE_R_A or 4YBB_AR_AA

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_R_A 7RYG_r_a 0.87 0.92 1.92 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 4YBB_AR_AA 0.84 0.95 2.09 0.58 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 4Y4O_1r_1a 0.98 0.99 1.04 0.89 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 6S0X_r_a 0.74 0.95 2.55 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 7K00_R_A 0.89 0.96 1.37 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 4YBB_AR_AA 0.73 0.95 2.78 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 6S0X_r_a 0.27 0.96 5.02 0.18 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 7K00_R_A 0.93 0.97 2.75 1.0 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 7RYG_r_a 0.91 0.97 1.52 0.85 tri-helical Bacterial small subunit ribosomal RNA compare