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All interfaces > All interologs > Interface groups > group94 > 4Y4O_1r_1a

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1r
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1r:48 [GLY] 1a:719 [C] 4.78 77.35
1r:49 [LYS] 1a:718 [G] 4.02 83.84
1r:49 [LYS] 1a:719 [C] 3.38 83.84
1r:50 [ILE] 1a:719 [C] 2.42 base:BB, sugar:BB 93.55
1r:50 [ILE] 1a:720 [C] 3.33 93.55
1r:51 [LEU] 1a:719 [C] 4.63 38.6
1r:51 [LEU] 1a:720 [C] 4.06 38.6
1r:52 [PRO] 1a:720 [C] 3.92 79.85
1r:53 [ARG] 1a:720 [C] 4.84 80.06
1r:53 [ARG] 1a:721 [G] 3.57 80.06
1r:53 [ARG] 1a:834 [C] 3.59 1a:852 [G] 80.06
1r:60 [ALA] 1a:834 [C] 3.87 1a:852 [G] 60.41
1r:60 [ALA] 1a:835 [U] 3.63 1a:851 [G] 60.41
1r:61 [LYS] 1a:662 [G] 4.15 1a:743 [U] 75.1
1r:61 [LYS] 1a:663 [A] 3.54 1a:742 [G] 75.1
1r:61 [LYS] 1a:835 [U] 3.16 1a:851 [G] 75.1
1r:61 [LYS] 1a:836 [G] 2.36 1a:850 [U] 75.1
1r:63 [GLN] 1a:720 [C] 3.55 sugar:SC 99.0
1r:63 [GLN] 1a:721 [G] 4.22 99.0
1r:64 [ARG] 1a:663 [A] 3.06 1a:742 [G] 86.28
1r:64 [ARG] 1a:664 [G] 2.86 1a:741 [G] 86.28
1r:64 [ARG] 1a:665 [A] 4.78 1a:724 [G] 86.28
1r:64 [ARG] 1a:834 [C] 3.76 1a:852 [G] 86.28
1r:64 [ARG] 1a:835 [U] 2.64 1a:851 [G] 86.28
1r:65 [ILE] 1a:664 [G] 4.61 1a:741 [G] 11.86
1r:67 [ALA] 1a:720 [C] 3.39 60.06
1r:68 [LYS] 1a:735 [C] 3.48 1a:671 [G] 51.98
1r:68 [LYS] 1a:736 [C] 3.36 1a:670 [G] 51.98
1r:71 [LYS] 1a:719 [C] 3.51 92.86
1r:71 [LYS] 1a:720 [C] 2.95 base:SC 92.86
1r:71 [LYS] 1a:721 [G] 4.29 92.86
1r:71 [LYS] 1a:734 [G] 3.44 1a:672 [U] 92.86
1r:71 [LYS] 1a:735 [C] 3.53 1a:671 [G] 92.86
1r:72 [ARG] 1a:735 [C] 3.91 1a:671 [G] 71.09
1r:72 [ARG] 1a:736 [C] 2.75 1a:670 [G] 71.09
1r:72 [ARG] 1a:737 [A] 4.42 1a:669 [U] 71.09
1r:74 [ARG] 1a:718 [G] 3.02 98.24
1r:74 [ARG] 1a:719 [C] 3.11 base:SC, base:SC 98.24
1r:75 [ILE] 1a:673 [G] 4.0 1a:717 [C] 40.38
1r:75 [ILE] 1a:734 [G] 3.96 1a:672 [U] 40.38
1r:75 [ILE] 1a:735 [C] 3.25 1a:671 [G] 40.38
1r:81 [PHE] 1a:673 [G] 3.31 1a:717 [C] 65.42
1r:81 [PHE] 1a:674 [G] 3.3 1a:716 [A] 65.42
1r:81 [PHE] 1a:718 [G] 2.69 base:BB, base:BB 65.42
1r:82 [THR] 1a:675 [A] 4.29 1a:715 [A] 50.5
1r:82 [THR] 1a:718 [G] 3.74 50.5

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group94 4Y4O_1r_1a 1r: 30s ribosomal protein s18, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SLQ0 tri-helical Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_R_A 4Y4O_1r_1a 0.98 0.99 1.04 0.89 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7RYG_r_a 0.87 0.91 2.0 0.53 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7K00_R_A 0.88 0.98 0.79 0.68 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 4YBB_AR_AA 0.73 0.95 2.78 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 6S0X_r_a 0.74 0.94 2.0 0.44 tri-helical Bacterial small subunit ribosomal RNA compare