Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
4Y4O_1r
|
4Y4O_1a
|
4YBB_AR
|
4YBB_AA
|
Conserved?
|
---|---|---|---|---|
1r:61 [LYS] | 1a:662 [G] | AR:50 [LYS] | AA:662 [U] | ✔ |
1r:61 [LYS] | 1a:663 [A] | AR:50 [LYS] | AA:663 [A] | ✔ |
1r:61 [LYS] | 1a:835 [U] | AR:50 [LYS] | AA:835 [U] | ✔ |
1r:61 [LYS] | 1a:836 [G] | AR:50 [LYS] | AA:836 [G] | ✔ |
1r:68 [LYS] | 1a:735 [C] | AR:57 [ARG] | AA:735 [C] | ✔ |
1r:68 [LYS] | 1a:736 [C] | AR:57 [ARG] | AA:736 [C] | ✔ |
1r:53 [ARG] | 1a:720 [C] | AR:42 [SER] | AA:720 [C] | ✔ |
1r:53 [ARG] | 1a:721 [G] | AR:42 [SER] | AA:721 [G] | ✔ |
1r:60 [ALA] | 1a:834 [C] | AR:49 [ALA] | AA:834 [U] | ✔ |
1r:60 [ALA] | 1a:835 [U] | AR:49 [ALA] | AA:835 [U] | ✔ |
1r:75 [ILE] | 1a:673 [G] | AR:64 [TYR] | AA:673 [A] | ✔ |
1r:75 [ILE] | 1a:734 [G] | AR:64 [TYR] | AA:734 [G] | ✔ |
1r:75 [ILE] | 1a:735 [C] | AR:64 [TYR] | AA:735 [C] | ✔ |
1r:48 [GLY] | 1a:719 [C] | AR:37 [GLY] | AA:719 [C] | ✔ |
1r:64 [ARG] | 1a:663 [A] | AR:53 [ARG] | AA:663 [A] | ✔ |
1r:64 [ARG] | 1a:664 [G] | AR:53 [ARG] | AA:664 [G] | ✔ |
1r:64 [ARG] | 1a:665 [A] | AR:53 [ARG] | AA:665 [A] | ✔ |
1r:64 [ARG] | 1a:834 [C] | AR:53 [ARG] | AA:834 [U] | ✔ |
1r:64 [ARG] | 1a:835 [U] | AR:53 [ARG] | AA:835 [U] | ✔ |
1r:71 [LYS] | 1a:719 [C] | AR:60 [LYS] | AA:719 [C] | ✔ |
1r:71 [LYS] | 1a:720 [C] | AR:60 [LYS] | AA:720 [C] | ✔ |
1r:71 [LYS] | 1a:721 [G] | AR:60 [LYS] | AA:721 [G] | ✔ |
1r:71 [LYS] | 1a:734 [G] | AR:60 [LYS] | AA:734 [G] | ✔ |
1r:71 [LYS] | 1a:735 [C] | AR:60 [LYS] | AA:735 [C] | ✔ |
1r:67 [ALA] | 1a:720 [C] | AR:56 [ALA] | AA:720 [C] | ✔ |
1r:50 [ILE] | 1a:719 [C] | AR:39 [ILE] | AA:719 [C] | ✔ |
1r:50 [ILE] | 1a:720 [C] | AR:39 [ILE] | AA:720 [C] | ✔ |
1r:74 [ARG] | 1a:718 [G] | AR:63 [ARG] | AA:718 [A] | ✔ |
1r:74 [ARG] | 1a:719 [C] | AR:63 [ARG] | AA:719 [C] | ✔ |
1r:51 [LEU] | 1a:719 [C] | AR:40 [VAL] | AA:719 [C] | ✔ |
1r:51 [LEU] | 1a:720 [C] | AR:40 [VAL] | AA:720 [C] | ✔ |
1r:52 [PRO] | 1a:720 [C] | AR:41 [PRO] | AA:720 [C] | ✔ |
1r:49 [LYS] | 1a:718 [G] | AR:38 [LYS] | AA:718 [A] | ✔ |
1r:49 [LYS] | 1a:719 [C] | AR:38 [LYS] | AA:719 [C] | ✔ |
1r:82 [THR] | 1a:675 [A] | AR:70 [TYR] | AA:675 [A] | ✔ |
1r:82 [THR] | 1a:718 [G] | AR:70 [TYR] | AA:718 [A] | ✔ |
1r:63 [GLN] | 1a:720 [C] | AR:52 [GLN] | AA:720 [C] | ✔ |
1r:63 [GLN] | 1a:721 [G] | AR:52 [GLN] | AA:721 [G] | ✔ |
1r:72 [ARG] | 1a:735 [C] | AR:61 [ARG] | AA:735 [C] | ✔ |
1r:72 [ARG] | 1a:736 [C] | AR:61 [ARG] | AA:736 [C] | ✔ |
1r:72 [ARG] | 1a:737 [A] | AR:61 [ARG] | AA:737 [C] | ✔ |
1r:53 [ARG] | 1a:834 [C] | AR:42 [SER] | AA:834 [U] | ❌ 4YBB_AR_AA |
1r:65 [ILE] | 1a:664 [G] | AR:54 [GLN] | AA:664 [G] | ❌ 4YBB_AR_AA |
1r:52 [PRO] | 1a:719 [C] | AR:41 [PRO] | AA:719 [C] | ❌ 4Y4O_1r_1a |
1r:52 [PRO] | 1a:721 [G] | AR:41 [PRO] | AA:721 [G] | ❌ 4Y4O_1r_1a |
1r:65 [ILE] | 1a:663 [A] | AR:54 [GLN] | AA:663 [A] | ❌ 4Y4O_1r_1a |
1r:82 [THR] | 1a:673 [G] | AR:70 [TYR] | AA:673 [A] | ❌ 4Y4O_1r_1a |
1r:82 [THR] | 1a:674 [G] | AR:70 [TYR] | AA:674 [G] | ❌ 4Y4O_1r_1a |
1r:75 [ILE] | 1a:672 [U] | AR:64 [TYR] | AA:672 [U] | ❌ 4Y4O_1a:672 no longer at interface |
1r:81 [PHE] | 1a:673 [G] | AR:69 [PRO] | AA:673 [A] | ❌ 4YBB_AR:69 no longer at interface |
1r:81 [PHE] | 1a:674 [G] | AR:69 [PRO] | AA:674 [G] | ❌ 4YBB_AR:69 no longer at interface |
1r:81 [PHE] | 1a:718 [G] | AR:69 [PRO] | AA:718 [A] | ❌ 4YBB_AR:69 no longer at interface |
1r:83 [GLU] | 1a:718 [G] | AR:71 [THR] | AA:718 [A] | ❌ 4Y4O_1r:83 no longer at interface |
1r:83 [GLU] | 1a:675 [A] | AR:71 [THR] | AA:675 [A] | ❌ 4Y4O_1r:83 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
tri-helical | Bacterial small subunit ribosomal RNA | 0.95 | 2.78 | 0.63 | 0.86 | 0.96 | 0.95 | 1.0 | 0.73 | 0.56 | 0.59 | 0.46 |
Other pairs involving 4Y4O_1r_1a or 4YBB_AR_AA
Total number of entries: 9