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All interfaces > All interologs > Interface groups > group94 > 4Y4O_1r_1a vs 6S0X_r_a

Interface analysis


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Common contacts -

4Y4O_1r
4Y4O_1a
6S0X_r
6S0X_a
Conserved?
1r:61 [LYS] 1a:662 [G] r:55 [LYS] a:670 [A] ✔
1r:61 [LYS] 1a:835 [U] r:55 [LYS] a:843 [A] ✔
1r:61 [LYS] 1a:836 [G] r:55 [LYS] a:844 [G] ✔
1r:53 [ARG] 1a:720 [C] r:47 [ARG] a:728 [C] ✔
1r:53 [ARG] 1a:721 [G] r:47 [ARG] a:729 [A] ✔
1r:53 [ARG] 1a:834 [C] r:47 [ARG] a:842 [U] ✔
1r:60 [ALA] 1a:834 [C] r:54 [ALA] a:842 [U] ✔
1r:60 [ALA] 1a:835 [U] r:54 [ALA] a:843 [A] ✔
1r:81 [PHE] 1a:673 [G] r:75 [TYR] a:681 [G] ✔
1r:81 [PHE] 1a:674 [G] r:75 [TYR] a:682 [G] ✔
1r:81 [PHE] 1a:718 [G] r:75 [TYR] a:726 [A] ✔
1r:75 [ILE] 1a:734 [G] r:69 [HIS] a:742 [A] ✔
1r:75 [ILE] 1a:735 [C] r:69 [HIS] a:743 [C] ✔
1r:48 [GLY] 1a:719 [C] r:42 [GLY] a:727 [C] ✔
1r:64 [ARG] 1a:663 [A] r:58 [ARG] a:671 [A] ✔
1r:64 [ARG] 1a:664 [G] r:58 [ARG] a:672 [G] ✔
1r:64 [ARG] 1a:834 [C] r:58 [ARG] a:842 [U] ✔
1r:64 [ARG] 1a:835 [U] r:58 [ARG] a:843 [A] ✔
1r:71 [LYS] 1a:720 [C] r:65 [LYS] a:728 [C] ✔
1r:71 [LYS] 1a:734 [G] r:65 [LYS] a:742 [A] ✔
1r:71 [LYS] 1a:735 [C] r:65 [LYS] a:743 [C] ✔
1r:67 [ALA] 1a:720 [C] r:61 [THR] a:728 [C] ✔
1r:50 [ILE] 1a:719 [C] r:44 [ILE] a:727 [C] ✔
1r:50 [ILE] 1a:720 [C] r:44 [ILE] a:728 [C] ✔
1r:74 [ARG] 1a:719 [C] r:68 [ARG] a:727 [C] ✔
1r:51 [LEU] 1a:719 [C] r:45 [LEU] a:727 [C] ✔
1r:51 [LEU] 1a:720 [C] r:45 [LEU] a:728 [C] ✔
1r:52 [PRO] 1a:720 [C] r:46 [PRO] a:728 [C] ✔
1r:49 [LYS] 1a:718 [G] r:43 [LYS] a:726 [A] ✔
1r:49 [LYS] 1a:719 [C] r:43 [LYS] a:727 [C] ✔
1r:82 [THR] 1a:718 [G] r:76 [VAL] a:726 [A] ✔
1r:63 [GLN] 1a:720 [C] r:57 [GLN] a:728 [C] ✔
1r:72 [ARG] 1a:736 [C] r:66 [ARG] a:744 [U] ✔
1r:61 [LYS] 1a:663 [A] r:55 [LYS] a:671 [A] ❌ 6S0X_r_a
1r:68 [LYS] 1a:735 [C] r:62 [THR] a:743 [C] ❌ 6S0X_r_a
1r:68 [LYS] 1a:736 [C] r:62 [THR] a:744 [U] ❌ 6S0X_r_a
1r:75 [ILE] 1a:673 [G] r:69 [HIS] a:681 [G] ❌ 6S0X_r_a
1r:71 [LYS] 1a:719 [C] r:65 [LYS] a:727 [C] ❌ 6S0X_r_a
1r:71 [LYS] 1a:721 [G] r:65 [LYS] a:729 [A] ❌ 6S0X_r_a
1r:74 [ARG] 1a:718 [G] r:68 [ARG] a:726 [A] ❌ 6S0X_r_a
1r:63 [GLN] 1a:721 [G] r:57 [GLN] a:729 [A] ❌ 6S0X_r_a
1r:72 [ARG] 1a:735 [C] r:66 [ARG] a:743 [C] ❌ 6S0X_r_a
1r:61 [LYS] 1a:834 [C] r:55 [LYS] a:842 [U] ❌ 4Y4O_1r_1a
1r:64 [ARG] 1a:662 [G] r:58 [ARG] a:670 [A] ❌ 4Y4O_1r_1a
1r:68 [LYS] 1a:664 [G] r:62 [THR] a:672 [G] ❌ 4Y4O_1r_1a
1r:75 [ILE] 1a:736 [C] r:69 [HIS] a:744 [U] ❌ 4Y4O_1r_1a
1r:82 [THR] 1a:674 [G] r:76 [VAL] a:682 [G] ❌ 4Y4O_1r_1a
1r:64 [ARG] 1a:665 [A] r:58 [ARG] a:673 [A] ❌ 6S0X_a:673 no longer at interface
1r:82 [THR] 1a:675 [A] r:76 [VAL] a:683 [A] ❌ 6S0X_a:683 no longer at interface
1r:72 [ARG] 1a:737 [A] r:66 [ARG] a:745 [U] ❌ 6S0X_a:745 no longer at interface
1r:53 [ARG] 1a:833 [U] r:47 [ARG] a:841 [U] ❌ 4Y4O_1a:833 no longer at interface
1r:75 [ILE] 1a:672 [U] r:69 [HIS] a:680 [U] ❌ 4Y4O_1a:672 no longer at interface
1r:75 [ILE] 1a:671 [G] r:69 [HIS] a:679 [G] ❌ 4Y4O_1a:671 no longer at interface
1r:81 [PHE] 1a:672 [U] r:75 [TYR] a:680 [U] ❌ 4Y4O_1a:672 no longer at interface
1r:65 [ILE] 1a:664 [G] r:59 [MET] a:672 [G] ❌ 6S0X_r:59 no longer at interface
1r:59 [SER] 1a:835 [U] r:53 [SER] a:843 [A] ❌ 4Y4O_1r:59 no longer at interface
1r:59 [SER] 1a:834 [C] r:53 [SER] a:842 [U] ❌ 4Y4O_1r:59 no longer at interface
1r:76 [LEU] 1a:736 [C] r:70 [MET] a:744 [U] ❌ 4Y4O_1r:76 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
tri-helical Bacterial small subunit ribosomal RNA 0.94 2.0 0.44 0.73 0.95 0.95 0.83 0.74 0.63 0.38 0.44


Other pairs involving 4Y4O_1r_1a or 6S0X_r_a

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_R_A 4Y4O_1r_1a 0.98 0.99 1.04 0.89 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 6S0X_r_a 0.74 0.95 2.55 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7K00_R_A 0.72 0.95 2.35 0.53 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7RYG_r_a 0.45 0.96 4.7 0.35 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 6S0X_r_a 0.27 0.96 5.02 0.18 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7RYG_r_a 0.87 0.91 2.0 0.53 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7K00_R_A 0.88 0.98 0.79 0.68 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 4YBB_AR_AA 0.73 0.95 2.78 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 6S0X_r_a 0.74 0.94 2.0 0.44 tri-helical Bacterial small subunit ribosomal RNA compare