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All interfaces > All interologs > Interface groups > group94 > 4YBB_AR_AA vs 6S0X_r_a

Interface analysis


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Common contacts -

4YBB_AR
4YBB_AA
6S0X_r
6S0X_a
Conserved?
AR:39 [ILE] AA:719 [C] r:44 [ILE] a:727 [C] ✔
AR:39 [ILE] AA:720 [C] r:44 [ILE] a:728 [C] ✔
AR:49 [ALA] AA:834 [U] r:53 [SER] a:842 [U] ✔
AR:49 [ALA] AA:835 [U] r:53 [SER] a:843 [A] ✔
AR:40 [VAL] AA:719 [C] r:45 [LEU] a:727 [C] ✔
AR:40 [VAL] AA:720 [C] r:45 [LEU] a:728 [C] ✔
AR:37 [GLY] AA:719 [C] r:42 [GLY] a:727 [C] ✔
AR:41 [PRO] AA:720 [C] r:46 [PRO] a:728 [C] ✔
AR:38 [LYS] AA:718 [A] r:43 [LYS] a:726 [A] ✔
AR:38 [LYS] AA:719 [C] r:43 [LYS] a:727 [C] ✔
AR:70 [TYR] AA:674 [G] r:76 [VAL] a:682 [G] ✔
AR:70 [TYR] AA:718 [A] r:76 [VAL] a:726 [A] ✔
AR:42 [SER] AA:720 [C] r:47 [ARG] a:728 [C] ✔
AR:42 [SER] AA:721 [G] r:47 [ARG] a:729 [A] ✔
AR:50 [LYS] AA:835 [U] r:54 [ALA] a:843 [A] ✔
AR:60 [LYS] AA:719 [C] r:66 [ARG] a:727 [C] ❌ 6S0X_r_a
AR:60 [LYS] AA:720 [C] r:66 [ARG] a:728 [C] ❌ 6S0X_r_a
AR:60 [LYS] AA:721 [G] r:66 [ARG] a:729 [A] ❌ 6S0X_r_a
AR:60 [LYS] AA:734 [G] r:66 [ARG] a:742 [A] ❌ 6S0X_r_a
AR:60 [LYS] AA:735 [C] r:66 [ARG] a:743 [C] ❌ 6S0X_r_a
AR:52 [GLN] AA:720 [C] r:58 [ARG] a:728 [C] ❌ 6S0X_r_a
AR:52 [GLN] AA:721 [G] r:58 [ARG] a:729 [A] ❌ 6S0X_r_a
AR:41 [PRO] AA:719 [C] r:46 [PRO] a:727 [C] ❌ 6S0X_r_a
AR:41 [PRO] AA:721 [G] r:46 [PRO] a:729 [A] ❌ 6S0X_r_a
AR:70 [TYR] AA:673 [A] r:76 [VAL] a:681 [G] ❌ 6S0X_r_a
AR:64 [TYR] AA:672 [U] r:70 [MET] a:680 [U] ❌ 6S0X_r_a
AR:64 [TYR] AA:673 [A] r:70 [MET] a:681 [G] ❌ 6S0X_r_a
AR:64 [TYR] AA:734 [G] r:70 [MET] a:742 [A] ❌ 6S0X_r_a
AR:64 [TYR] AA:735 [C] r:70 [MET] a:743 [C] ❌ 6S0X_r_a
AR:50 [LYS] AA:662 [U] r:54 [ALA] a:670 [A] ❌ 6S0X_r_a
AR:50 [LYS] AA:663 [A] r:54 [ALA] a:671 [A] ❌ 6S0X_r_a
AR:50 [LYS] AA:836 [G] r:54 [ALA] a:844 [G] ❌ 6S0X_r_a
AR:63 [ARG] AA:718 [A] r:69 [HIS] a:726 [A] ❌ 6S0X_r_a
AR:63 [ARG] AA:719 [C] r:69 [HIS] a:727 [C] ❌ 6S0X_r_a
AR:42 [SER] AA:834 [U] r:47 [ARG] a:842 [U] ❌ 4YBB_AR_AA
AR:50 [LYS] AA:834 [U] r:54 [ALA] a:842 [U] ❌ 4YBB_AR_AA
AR:52 [GLN] AA:664 [G] r:58 [ARG] a:672 [G] ❌ 4YBB_AR_AA
AR:52 [GLN] AA:835 [U] r:58 [ARG] a:843 [A] ❌ 4YBB_AR_AA
AR:52 [GLN] AA:662 [U] r:58 [ARG] a:670 [A] ❌ 4YBB_AR_AA
AR:52 [GLN] AA:663 [A] r:58 [ARG] a:671 [A] ❌ 4YBB_AR_AA
AR:52 [GLN] AA:834 [U] r:58 [ARG] a:842 [U] ❌ 4YBB_AR_AA
AR:60 [LYS] AA:736 [C] r:66 [ARG] a:744 [U] ❌ 4YBB_AR_AA
AR:63 [ARG] AA:736 [C] r:69 [HIS] a:744 [U] ❌ 4YBB_AR_AA
AR:63 [ARG] AA:672 [U] r:69 [HIS] a:680 [U] ❌ 4YBB_AR_AA
AR:63 [ARG] AA:735 [C] r:69 [HIS] a:743 [C] ❌ 4YBB_AR_AA
AR:63 [ARG] AA:734 [G] r:69 [HIS] a:742 [A] ❌ 4YBB_AR_AA
AR:64 [TYR] AA:736 [C] r:70 [MET] a:744 [U] ❌ 4YBB_AR_AA
AR:48 [ARG] AA:846 [G] r:52 [THR] a:855 [C] ❌ 6S0X_r:52, 6S0X_a:855 no longer at interface
AR:53 [ARG] AA:665 [A] r:59 [MET] a:673 [A] ❌ 6S0X_r:59, 6S0X_a:673 no longer at interface
AR:70 [TYR] AA:675 [A] r:76 [VAL] a:683 [A] ❌ 6S0X_a:683 no longer at interface
AR:74 [HIS] AA:675 [A] r:77 [LYS] a:683 [A] ❌ 6S0X_r:77, 6S0X_a:683 no longer at interface
AR:61 [ARG] AA:737 [C] r:67 [SER] a:745 [U] ❌ 6S0X_r:67, 6S0X_a:745 no longer at interface
AR:43 [ARG] AA:722 [G] r:48 [ARG] a:730 [G] ❌ 6S0X_r:48, 6S0X_a:730 no longer at interface
AR:42 [SER] AA:833 [G] r:47 [ARG] a:841 [U] ❌ 4YBB_AA:833 no longer at interface
AR:63 [ARG] AA:671 [G] r:69 [HIS] a:679 [G] ❌ 4YBB_AA:671 no longer at interface
AR:48 [ARG] AA:845 [A] r:52 [THR] a:854 [G] ❌ 6S0X_r:52 no longer at interface
AR:53 [ARG] AA:663 [A] r:59 [MET] a:671 [A] ❌ 6S0X_r:59 no longer at interface
AR:53 [ARG] AA:664 [G] r:59 [MET] a:672 [G] ❌ 6S0X_r:59 no longer at interface
AR:53 [ARG] AA:834 [U] r:59 [MET] a:842 [U] ❌ 6S0X_r:59 no longer at interface
AR:53 [ARG] AA:835 [U] r:59 [MET] a:843 [A] ❌ 6S0X_r:59 no longer at interface
AR:57 [ARG] AA:735 [C] r:63 [ALA] a:743 [C] ❌ 6S0X_r:63 no longer at interface
AR:57 [ARG] AA:736 [C] r:63 [ALA] a:744 [U] ❌ 6S0X_r:63 no longer at interface
AR:54 [GLN] AA:663 [A] r:60 [LEU] a:671 [A] ❌ 6S0X_r:60 no longer at interface
AR:74 [HIS] AA:674 [G] r:77 [LYS] a:682 [G] ❌ 6S0X_r:77 no longer at interface
AR:61 [ARG] AA:735 [C] r:67 [SER] a:743 [C] ❌ 6S0X_r:67 no longer at interface
AR:61 [ARG] AA:736 [C] r:67 [SER] a:744 [U] ❌ 6S0X_r:67 no longer at interface
AR:43 [ARG] AA:720 [C] r:48 [ARG] a:728 [C] ❌ 6S0X_r:48 no longer at interface
AR:43 [ARG] AA:721 [G] r:48 [ARG] a:729 [A] ❌ 6S0X_r:48 no longer at interface
AR:47 [THR] AA:845 [A] r:51 [GLY] a:854 [G] ❌ 4YBB_AR:47 no longer at interface
AR:51 [TYR] AA:720 [C] r:57 [GLN] a:728 [C] ❌ 4YBB_AR:51 no longer at interface
AR:55 [LEU] AA:720 [C] r:61 [THR] a:728 [C] ❌ 4YBB_AR:55 no longer at interface
AR:59 [ILE] AA:720 [C] r:65 [LYS] a:728 [C] ❌ 4YBB_AR:59 no longer at interface
AR:59 [ILE] AA:735 [C] r:65 [LYS] a:743 [C] ❌ 4YBB_AR:59 no longer at interface
AR:59 [ILE] AA:734 [G] r:65 [LYS] a:742 [A] ❌ 4YBB_AR:59 no longer at interface
AR:62 [ALA] AA:719 [C] r:68 [ARG] a:727 [C] ❌ 4YBB_AR:62 no longer at interface
AR:69 [PRO] AA:673 [A] r:75 [TYR] a:681 [G] ❌ 4YBB_AR:69 no longer at interface
AR:69 [PRO] AA:674 [G] r:75 [TYR] a:682 [G] ❌ 4YBB_AR:69 no longer at interface
AR:69 [PRO] AA:672 [U] r:75 [TYR] a:680 [U] ❌ 4YBB_AR:69 no longer at interface
AR:69 [PRO] AA:718 [A] r:75 [TYR] a:726 [A] ❌ 4YBB_AR:69 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
tri-helical Bacterial small subunit ribosomal RNA 0.96 5.02 0.18 0.81 0.96 0.59 0.85 0.27 0.40 0.05 0.50


Other pairs involving 4YBB_AR_AA or 6S0X_r_a

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_R_A 4YBB_AR_AA 0.84 0.95 2.09 0.58 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 6S0X_r_a 0.74 0.95 2.55 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7K00_R_A 0.72 0.95 2.35 0.53 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7RYG_r_a 0.45 0.96 4.7 0.35 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 6S0X_r_a 0.27 0.96 5.02 0.18 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 7K00_R_A 0.93 0.97 2.75 1.0 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 7RYG_r_a 0.91 0.97 1.52 0.85 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 4YBB_AR_AA 0.73 0.95 2.78 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 6S0X_r_a 0.74 0.94 2.0 0.44 tri-helical Bacterial small subunit ribosomal RNA compare