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All interfaces > All interologs > Interface groups > group94 > 6S0X_r_a

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_r
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
r:42 [GLY] a:727 [C] 4.24 78.26
r:43 [LYS] a:726 [A] 3.34 77.26
r:43 [LYS] a:727 [C] 3.37 77.26
r:44 [ILE] a:727 [C] 2.49 base:BB, sugar:BB, sugar:BB 99.0
r:44 [ILE] a:728 [C] 3.33 99.0
r:45 [LEU] a:727 [C] 4.59 42.34
r:45 [LEU] a:728 [C] 3.85 42.34
r:46 [PRO] a:728 [C] 3.66 65.73
r:47 [ARG] a:728 [C] 4.37 78.18
r:47 [ARG] a:729 [A] 3.29 78.18
r:47 [ARG] a:841 [U] 4.6 a:862 [G] 78.18
r:47 [ARG] a:842 [U] 3.46 a:861 [A] 78.18
r:51 [GLY] a:854 [G] 4.31 a:849 [U] 58.3
r:53 [SER] a:842 [U] 4.88 a:861 [A] 67.8
r:53 [SER] a:843 [A] 4.15 a:860 [U] 67.8
r:54 [ALA] a:842 [U] 3.39 a:861 [A] 38.99
r:54 [ALA] a:843 [A] 3.27 a:860 [U] 38.99
r:55 [LYS] a:670 [A] 4.63 a:751 [U] 58.96
r:55 [LYS] a:842 [U] 4.86 a:861 [A] 58.96
r:55 [LYS] a:843 [A] 2.72 a:860 [U] 58.96
r:55 [LYS] a:844 [G] 2.7 a:859 [U] 58.96
r:56 [TYR] a:853 [C] 4.12 64.06
r:57 [GLN] a:728 [C] 2.35 sugar:SC 98.08
r:58 [ARG] a:670 [A] 4.36 a:751 [U] 81.47
r:58 [ARG] a:671 [A] 3.45 a:750 [G] 81.47
r:58 [ARG] a:672 [G] 4.16 a:749 [G] 81.47
r:58 [ARG] a:842 [U] 3.41 a:861 [A] 81.47
r:58 [ARG] a:843 [A] 2.53 a:860 [U] 81.47
r:61 [THR] a:728 [C] 3.35 54.51
r:62 [THR] a:672 [G] 4.53 a:749 [G] 38.25
r:65 [LYS] a:728 [C] 2.92 base:SC, base:SC 83.65
r:65 [LYS] a:742 [A] 4.05 a:680 [U] 83.65
r:65 [LYS] a:743 [C] 3.73 a:679 [G] 83.65
r:66 [ARG] a:744 [U] 3.82 a:678 [A] 63.59
r:68 [ARG] a:727 [C] 3.64 98.4
r:69 [HIS] a:679 [G] 3.34 a:743 [C] 33.34
r:69 [HIS] a:680 [U] 2.31 a:742 [A] base:SC 33.34
r:69 [HIS] a:742 [A] 3.18 a:680 [U] 33.34
r:69 [HIS] a:743 [C] 3.09 a:679 [G] 33.34
r:69 [HIS] a:744 [U] 4.29 a:678 [A] 33.34
r:70 [MET] a:744 [U] 3.54 a:678 [A] 72.75
r:75 [TYR] a:680 [U] 4.14 a:742 [A] 46.54
r:75 [TYR] a:681 [G] 3.11 a:725 [C] 46.54
r:75 [TYR] a:682 [G] 4.03 a:724 [A] 46.54
r:75 [TYR] a:726 [A] 4.97 46.54
r:76 [VAL] a:682 [G] 3.25 a:724 [A] 22.86
r:76 [VAL] a:726 [A] 4.63 22.86

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group94 6S0X_r_a r: 30s ribosomal protein s18, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) A0A077UZF4 tri-helical Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_R_A 6S0X_r_a 0.74 0.95 2.55 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7K00_R_A 0.72 0.95 2.35 0.53 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7RYG_r_a 0.45 0.96 4.7 0.35 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 6S0X_r_a 0.27 0.96 5.02 0.18 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 6S0X_r_a 0.74 0.94 2.0 0.44 tri-helical Bacterial small subunit ribosomal RNA compare