Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 6S0X_r
|
6S0X_a
|
7RYG_r
|
7RYG_a
|
Conserved?
|
|---|---|---|---|---|
| r:43 [LYS] | a:726 [A] | r:38 [LYS] | a:715 [A] | ✔ |
| r:43 [LYS] | a:727 [C] | r:38 [LYS] | a:716 [C] | ✔ |
| r:54 [ALA] | a:842 [U] | r:49 [ALA] | a:831 [U] | ✔ |
| r:54 [ALA] | a:843 [A] | r:49 [ALA] | a:832 [G] | ✔ |
| r:57 [GLN] | a:728 [C] | r:52 [GLN] | a:717 [C] | ✔ |
| r:55 [LYS] | a:843 [A] | r:50 [ARG] | a:832 [G] | ✔ |
| r:55 [LYS] | a:844 [G] | r:50 [ARG] | a:833 [G] | ✔ |
| r:42 [GLY] | a:727 [C] | r:37 [GLY] | a:716 [C] | ✔ |
| r:76 [VAL] | a:682 [G] | r:70 [TYR] | a:671 [G] | ✔ |
| r:76 [VAL] | a:726 [A] | r:70 [TYR] | a:715 [A] | ✔ |
| r:44 [ILE] | a:727 [C] | r:39 [ILE] | a:716 [C] | ✔ |
| r:44 [ILE] | a:728 [C] | r:39 [ILE] | a:717 [C] | ✔ |
| r:45 [LEU] | a:728 [C] | r:40 [VAL] | a:717 [C] | ✔ |
| r:46 [PRO] | a:728 [C] | r:41 [PRO] | a:717 [C] | ✔ |
| r:58 [ARG] | a:671 [A] | r:53 [ARG] | a:660 [A] | ✔ |
| r:58 [ARG] | a:672 [G] | r:53 [ARG] | a:661 [G] | ✔ |
| r:58 [ARG] | a:842 [U] | r:53 [ARG] | a:831 [U] | ✔ |
| r:58 [ARG] | a:843 [A] | r:53 [ARG] | a:832 [G] | ✔ |
| r:47 [ARG] | a:728 [C] | r:42 [SER] | a:717 [C] | ✔ |
| r:47 [ARG] | a:729 [A] | r:42 [SER] | a:718 [G] | ✔ |
| r:66 [ARG] | a:744 [U] | r:60 [LYS] | a:733 [C] | ❌ 7RYG_r_a |
| r:70 [MET] | a:744 [U] | r:64 [TYR] | a:733 [C] | ❌ 7RYG_r_a |
| r:69 [HIS] | a:680 [U] | r:63 [ARG] | a:669 [U] | ❌ 7RYG_r_a |
| r:69 [HIS] | a:742 [A] | r:63 [ARG] | a:731 [G] | ❌ 7RYG_r_a |
| r:69 [HIS] | a:743 [C] | r:63 [ARG] | a:732 [C] | ❌ 7RYG_r_a |
| r:69 [HIS] | a:744 [U] | r:63 [ARG] | a:733 [C] | ❌ 7RYG_r_a |
| r:55 [LYS] | a:842 [U] | r:50 [ARG] | a:831 [U] | ❌ 7RYG_r_a |
| r:62 [THR] | a:672 [G] | r:56 [ALA] | a:661 [G] | ❌ 7RYG_r_a |
| r:45 [LEU] | a:727 [C] | r:40 [VAL] | a:716 [C] | ❌ 7RYG_r_a |
| r:47 [ARG] | a:842 [U] | r:42 [SER] | a:831 [U] | ❌ 7RYG_r_a |
| r:46 [PRO] | a:729 [A] | r:41 [PRO] | a:718 [G] | ❌ 6S0X_r_a |
| r:55 [LYS] | a:671 [A] | r:50 [ARG] | a:660 [A] | ❌ 6S0X_r_a |
| r:55 [LYS] | a:672 [G] | r:50 [ARG] | a:661 [G] | ❌ 6S0X_r_a |
| r:57 [GLN] | a:729 [A] | r:52 [GLN] | a:718 [G] | ❌ 6S0X_r_a |
| r:62 [THR] | a:728 [C] | r:56 [ALA] | a:717 [C] | ❌ 6S0X_r_a |
| r:66 [ARG] | a:727 [C] | r:60 [LYS] | a:716 [C] | ❌ 6S0X_r_a |
| r:66 [ARG] | a:743 [C] | r:60 [LYS] | a:732 [C] | ❌ 6S0X_r_a |
| r:66 [ARG] | a:728 [C] | r:60 [LYS] | a:717 [C] | ❌ 6S0X_r_a |
| r:66 [ARG] | a:742 [A] | r:60 [LYS] | a:731 [G] | ❌ 6S0X_r_a |
| r:69 [HIS] | a:726 [A] | r:63 [ARG] | a:715 [A] | ❌ 6S0X_r_a |
| r:69 [HIS] | a:727 [C] | r:63 [ARG] | a:716 [C] | ❌ 6S0X_r_a |
| r:70 [MET] | a:681 [G] | r:64 [TYR] | a:670 [A] | ❌ 6S0X_r_a |
| r:70 [MET] | a:743 [C] | r:64 [TYR] | a:732 [C] | ❌ 6S0X_r_a |
| r:70 [MET] | a:680 [U] | r:64 [TYR] | a:669 [U] | ❌ 6S0X_r_a |
| r:76 [VAL] | a:681 [G] | r:70 [TYR] | a:670 [A] | ❌ 6S0X_r_a |
| r:51 [GLY] | a:854 [G] | r:47 [THR] | a:842 [A] | ❌ 7RYG_r:47, 7RYG_a:842 no longer at interface |
| r:69 [HIS] | a:679 [G] | r:63 [ARG] | a:668 [G] | ❌ 7RYG_a:668 no longer at interface |
| r:55 [LYS] | a:670 [A] | r:50 [ARG] | a:659 [G] | ❌ 7RYG_a:659 no longer at interface |
| r:58 [ARG] | a:670 [A] | r:53 [ARG] | a:659 [G] | ❌ 7RYG_a:659 no longer at interface |
| r:47 [ARG] | a:841 [U] | r:42 [SER] | a:830 [U] | ❌ 7RYG_a:830 no longer at interface |
| r:48 [ARG] | a:730 [G] | r:43 [ARG] | a:719 [A] | ❌ 6S0X_r:48, 6S0X_a:730 no longer at interface |
| r:58 [ARG] | a:673 [A] | r:53 [ARG] | a:662 [A] | ❌ 6S0X_a:673 no longer at interface |
| r:77 [LYS] | a:683 [A] | r:71 [THR] | a:672 [A] | ❌ 6S0X_r:77, 6S0X_a:683 no longer at interface |
| r:75 [TYR] | a:680 [U] | r:69 [PRO] | a:669 [U] | ❌ 7RYG_r:69 no longer at interface |
| r:75 [TYR] | a:681 [G] | r:69 [PRO] | a:670 [A] | ❌ 7RYG_r:69 no longer at interface |
| r:75 [TYR] | a:682 [G] | r:69 [PRO] | a:671 [G] | ❌ 7RYG_r:69 no longer at interface |
| r:75 [TYR] | a:726 [A] | r:69 [PRO] | a:715 [A] | ❌ 7RYG_r:69 no longer at interface |
| r:65 [LYS] | a:728 [C] | r:59 [ILE] | a:717 [C] | ❌ 7RYG_r:59 no longer at interface |
| r:65 [LYS] | a:742 [A] | r:59 [ILE] | a:731 [G] | ❌ 7RYG_r:59 no longer at interface |
| r:65 [LYS] | a:743 [C] | r:59 [ILE] | a:732 [C] | ❌ 7RYG_r:59 no longer at interface |
| r:61 [THR] | a:728 [C] | r:55 [LEU] | a:717 [C] | ❌ 7RYG_r:55 no longer at interface |
| r:68 [ARG] | a:727 [C] | r:62 [ALA] | a:716 [C] | ❌ 7RYG_r:62 no longer at interface |
| r:60 [LEU] | a:672 [G] | r:54 [GLN] | a:661 [G] | ❌ 6S0X_r:60 no longer at interface |
| r:63 [ALA] | a:744 [U] | r:57 [LEU] | a:733 [C] | ❌ 6S0X_r:63 no longer at interface |
| r:63 [ALA] | a:743 [C] | r:57 [LEU] | a:732 [C] | ❌ 6S0X_r:63 no longer at interface |
| r:67 [SER] | a:744 [U] | r:61 [GLN] | a:733 [C] | ❌ 6S0X_r:67 no longer at interface |
| r:67 [SER] | a:743 [C] | r:61 [GLN] | a:732 [C] | ❌ 6S0X_r:67 no longer at interface |
| r:77 [LYS] | a:726 [A] | r:71 [THR] | a:715 [A] | ❌ 6S0X_r:77 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tri-helical | Bacterial small subunit ribosomal RNA | 0.96 | 4.7 | 0.35 | 0.82 | 0.96 | 0.75 | 0.83 | 0.45 | 0.43 | 0.16 | 0.48 |
Other pairs involving 6S0X_r_a or 7RYG_r_a
Total number of entries: 9