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All interfaces > All interologs > Interface groups > group94 > 7K00_R_A

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_R
7K00_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:37 [GLY] A:719 [C] 4.48 0.0
R:38 [LYS] A:718 [A] 3.45 0.0
R:38 [LYS] A:719 [C] 3.26 0.0
R:39 [ILE] A:719 [C] 2.73 base:BB, sugar:BB 0.0
R:39 [ILE] A:720 [C] 3.59 0.0
R:40 [VAL] A:719 [C] 4.89 0.0
R:40 [VAL] A:720 [C] 4.18 0.0
R:41 [PRO] A:719 [C] 4.73 0.0
R:41 [PRO] A:720 [C] 3.52 0.0
R:41 [PRO] A:721 [G] 3.89 0.0
R:42 [SER] A:720 [C] 4.12 0.0
R:42 [SER] A:721 [G] 2.67 0.0
R:43 [ARG] A:721 [G] 4.33 0.0
R:48 [ARG] A:846 [G] 3.69 A:840 [C] 0.0
R:49 [ALA] A:834 [U] 3.64 A:852 [G] 0.0
R:49 [ALA] A:835 [U] 4.14 A:851 [G] 0.0
R:50 [LYS] A:662 [U] 4.28 A:743 [A] 0.0
R:50 [LYS] A:663 [A] 3.05 A:742 [G] 0.0
R:50 [LYS] A:835 [U] 3.34 A:851 [G] 0.0
R:50 [LYS] A:836 [G] 3.61 A:850 [U] 0.0
R:52 [GLN] A:720 [C] 3.12 sugar:SC 0.0
R:52 [GLN] A:721 [G] 3.57 0.0
R:53 [ARG] A:663 [A] 3.1 A:742 [G] 0.0
R:53 [ARG] A:664 [G] 2.69 A:741 [G] 0.0
R:53 [ARG] A:665 [A] 4.37 A:724 [G] 0.0
R:53 [ARG] A:834 [U] 4.13 A:852 [G] 0.0
R:53 [ARG] A:835 [U] 2.93 A:851 [G] 0.0
R:56 [ALA] A:720 [C] 3.67 0.0
R:57 [ARG] A:664 [G] 2.8 A:741 [G] 0.0
R:57 [ARG] A:665 [A] 3.5 A:724 [G] 0.0
R:57 [ARG] A:735 [C] 4.27 A:671 [G] 0.0
R:60 [LYS] A:719 [C] 4.0 0.0
R:60 [LYS] A:720 [C] 3.0 base:SC 0.0
R:60 [LYS] A:721 [G] 4.24 0.0
R:60 [LYS] A:734 [G] 3.55 A:672 [U] 0.0
R:60 [LYS] A:735 [C] 3.69 A:671 [G] 0.0
R:61 [ARG] A:735 [C] 3.95 A:671 [G] 0.0
R:61 [ARG] A:736 [C] 2.6 A:670 [G] 0.0
R:63 [ARG] A:718 [A] 3.55 0.0
R:63 [ARG] A:719 [C] 2.99 base:SC, base:SC 0.0
R:64 [TYR] A:672 [U] 3.38 A:734 [G] sugar:SC 0.0
R:64 [TYR] A:673 [A] 3.56 A:717 [U] 0.0
R:64 [TYR] A:735 [C] 4.93 A:671 [G] 0.0
R:70 [TYR] A:673 [A] 2.89 A:717 [U] sugar:SC 0.0
R:70 [TYR] A:674 [G] 3.35 A:716 [A] 0.0
R:70 [TYR] A:718 [A] 3.09 base:BB 0.0
R:71 [THR] A:675 [A] 4.22 A:715 [A] 0.0
R:74 [HIS] A:674 [G] 3.13 A:716 [A] 0.0
R:74 [HIS] A:675 [A] 2.84 A:715 [A] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group94 7K00_R_A R: 30s ribosomal protein s18, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) P0A7T7 tri-helical Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7K00_R_A 7RYG_r_a 0.91 0.92 1.59 0.8 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 7K00_R_A 0.89 0.96 1.37 0.63 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7K00_R_A 0.72 0.95 2.35 0.53 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 7K00_R_A 0.93 0.97 2.75 1.0 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7K00_R_A 0.88 0.98 0.79 0.68 tri-helical Bacterial small subunit ribosomal RNA compare