RNAprotDB

All interfaces > All interologs > Interface groups > group94 > 7RYG_r_a

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7RYG_r
7RYG_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
r:37 [GLY] a:716 [C] 4.26 79.99
r:38 [LYS] a:715 [A] 3.53 75.71
r:38 [LYS] a:716 [C] 3.04 75.71
r:39 [ILE] a:716 [C] 2.95 base:BB, sugar:BB, sugar:BB 99.0
r:39 [ILE] a:717 [C] 3.81 99.0
r:40 [VAL] a:717 [C] 4.39 11.31
r:41 [PRO] a:717 [C] 3.65 66.06
r:41 [PRO] a:718 [G] 4.73 66.06
r:42 [SER] a:717 [C] 4.45 69.07
r:42 [SER] a:718 [G] 3.26 69.07
r:43 [ARG] a:719 [A] 4.9 a:730 [A] 53.84
r:49 [ALA] a:831 [U] 4.71 a:849 [A] 52.67
r:49 [ALA] a:832 [G] 4.47 a:848 [U] 52.67
r:50 [ARG] a:660 [A] 4.1 a:739 [G] 62.21
r:50 [ARG] a:661 [G] 4.97 a:738 [G] 62.21
r:50 [ARG] a:832 [G] 3.55 a:848 [U] 62.21
r:50 [ARG] a:833 [G] 4.47 a:847 [U] 62.21
r:52 [GLN] a:717 [C] 3.11 sugar:SC 98.63
r:52 [GLN] a:718 [G] 3.83 98.63
r:53 [ARG] a:660 [A] 3.39 a:739 [G] 76.98
r:53 [ARG] a:661 [G] 3.21 a:738 [G] 76.98
r:53 [ARG] a:662 [A] 4.8 a:721 [G] 76.98
r:53 [ARG] a:831 [U] 4.93 a:849 [A] 76.98
r:53 [ARG] a:832 [G] 3.84 a:848 [U] 76.98
r:54 [GLN] a:661 [G] 3.7 a:738 [G] 5.59
r:56 [ALA] a:717 [C] 3.56 54.39
r:57 [LEU] a:732 [C] 3.86 a:668 [G] 35.45
r:57 [LEU] a:733 [C] 3.97 a:667 [G] 35.45
r:60 [LYS] a:716 [C] 4.15 80.42
r:60 [LYS] a:717 [C] 4.3 80.42
r:60 [LYS] a:731 [G] 2.74 a:669 [U] 80.42
r:60 [LYS] a:732 [C] 2.83 a:668 [G] 80.42
r:61 [GLN] a:732 [C] 3.74 a:668 [G] 70.89
r:61 [GLN] a:733 [C] 2.67 a:667 [G] 70.89
r:63 [ARG] a:715 [A] 3.21 base:SC 98.79
r:63 [ARG] a:716 [C] 3.61 base:SC 98.79
r:64 [TYR] a:669 [U] 3.38 a:731 [G] sugar:SC 24.7
r:64 [TYR] a:670 [A] 3.17 a:714 [U] 24.7
r:64 [TYR] a:732 [C] 4.98 a:668 [G] 24.7
r:70 [TYR] a:670 [A] 3.21 a:714 [U] 51.64
r:70 [TYR] a:671 [G] 4.19 a:713 [A] 51.64
r:70 [TYR] a:715 [A] 4.12 51.64
r:71 [THR] a:672 [A] 4.93 a:712 [A] 36.03
r:71 [THR] a:715 [A] 4.81 36.03

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group94 7RYG_r_a r: 30s ribosomal protein s18, Acinetobacter baumannii ab0057 (natural) a: 16s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) A0A022IPE7 tri-helical Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7K00_R_A 7RYG_r_a 0.91 0.92 1.59 0.8 tri-helical Bacterial small subunit ribosomal RNA compare
2VQE_R_A 7RYG_r_a 0.87 0.92 1.92 0.47 tri-helical Bacterial small subunit ribosomal RNA compare
6S0X_r_a 7RYG_r_a 0.45 0.96 4.7 0.35 tri-helical Bacterial small subunit ribosomal RNA compare
4YBB_AR_AA 7RYG_r_a 0.91 0.97 1.52 0.85 tri-helical Bacterial small subunit ribosomal RNA compare
4Y4O_1r_1a 7RYG_r_a 0.87 0.91 2.0 0.53 tri-helical Bacterial small subunit ribosomal RNA compare