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All interfaces > All interologs > Interface groups > group95 > 3V74_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3V74_A
3V74_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:201 [LYS] B:12 [A] 2.84 93.7
A:204 [CYS] B:12 [A] 4.42 94.64
A:205 [GLN] B:12 [A] 3.59 90.36
A:208 [GLU] B:12 [A] 2.98 base:SC 96.41
A:241 [ILE] B:11 [U] 4.08 75.46
A:241 [ILE] B:12 [A] 4.29 75.46
A:242 [PHE] B:12 [A] 4.07 89.37
A:244 [ASN] B:11 [U] 2.77 base:SC, base:SC 98.64
A:245 [TYR] B:11 [U] 3.04 base/AA stacks 91.71
A:245 [TYR] B:12 [A] 3.23 base/AA stacks 91.71
A:248 [GLN] B:11 [U] 2.9 base:SC 98.23
A:284 [LYS] B:10 [A] 4.6 81.21
A:284 [LYS] B:11 [U] 4.39 81.21
A:285 [PHE] B:11 [U] 3.32 80.51
A:287 [CYS] B:10 [A] 3.72 87.84
A:288 [ARG] B:10 [A] 3.25 base/AA stacks 96.85
A:288 [ARG] B:11 [U] 3.16 sugar:SC base/AA stacks 96.85
A:291 [GLN] B:10 [A] 2.8 base:SC, base:SC 96.99
A:322 [GLN] B:10 [A] 4.21 89.56
A:323 [ASN] B:10 [A] 4.01 87.76
A:326 [HIS] B:9 [C] 4.18 97.54
A:326 [HIS] B:10 [A] 3.21 base/AA stacks 97.54
A:360 [LYS] B:7 [G] 3.71 79.92
A:360 [LYS] B:8 [C] 3.48 79.92
A:361 [TYR] B:8 [C] 3.25 91.11
A:361 [TYR] B:9 [C] 4.71 91.11
A:363 [CYS] B:7 [G] 3.38 97.12
A:364 [ARG] B:7 [G] 3.29 97.84
A:364 [ARG] B:8 [C] 2.71 base:SC, base:SC 97.84
A:367 [GLN] B:7 [G] 4.57 98.56
A:412 [GLU] B:6 [U] 3.54 85.4
A:412 [GLU] B:7 [G] 4.91 85.4
A:413 [TYR] B:7 [G] 3.48 83.05
A:415 [ASN] B:6 [U] 2.88 base:SC, base:SC 97.92
A:416 [TYR] B:6 [U] 3.01 base/AA stacks 93.04
A:416 [TYR] B:7 [G] 3.12 base/AA stacks 93.04
A:419 [GLN] B:6 [U] 2.8 base:SC 98.59
A:450 [LYS] B:5 [G] 2.99 sugar:SC 98.34
A:450 [LYS] B:6 [U] 3.31 98.34
A:451 [PHE] B:6 [U] 3.29 80.96
A:453 [SER] B:5 [G] 2.87 base:SC 99.0
A:454 [HIS] B:5 [G] 3.18 base/AA stacks 97.15
A:454 [HIS] B:6 [U] 3.23 base/AA stacks 97.15
A:457 [GLU] B:5 [G] 2.68 base:SC, base:SC 96.21
A:494 [MET] B:2 [C] 3.78 base:BB 87.54
A:495 [PHE] B:2 [C] 3.03 base:BB 77.11
A:496 [HIS] B:2 [C] 3.67 95.14
A:497 [GLN] B:2 [C] 4.53 86.99
A:497 [GLN] B:4 [U] 3.53 86.99
A:497 [GLN] B:5 [G] 4.88 86.99
A:498 [PHE] B:5 [G] 3.54 68.6
A:500 [ASN] B:2 [C] 3.62 base/AA stacks 98.97
A:500 [ASN] B:4 [U] 2.92 base:SC, base:SC 98.97
A:501 [TYR] B:4 [U] 2.97 base/AA stacks 98.67
A:501 [TYR] B:5 [G] 3.18 base/AA stacks 98.67
A:504 [GLN] B:4 [U] 2.77 base:SC 98.81
A:551 [ARG] B:2 [C] 4.45 80.69
A:552 [PHE] B:2 [C] 3.55 base/AA stacks 55.83
A:553 [SER] B:2 [C] 3.06 sugar:BB 91.69
A:553 [SER] B:3 [A] 2.8 base:SC 91.69
A:553 [SER] B:4 [U] 3.63 91.69
A:554 [SER] B:2 [C] 2.54 base:BB, base:SC, base:SC 92.93
A:554 [SER] B:4 [U] 3.61 92.93
A:555 [GLY] B:2 [C] 4.9 92.79
A:556 [LYS] B:3 [A] 3.52 96.87
A:557 [LYS] B:3 [A] 4.14 92.13
A:557 [LYS] B:4 [U] 2.91 base:SC 92.13

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group95 3V74_A_B A: Fem-3 mRNA-binding factor 2, Caenorhabditis elegans (genetically engineered) B: Caenorhabditis elegans (synthetic) Q09312 ARM repeat ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3V6Y_A_B 3V74_A_B 1.00 0.99 0.31 0.91 ARM repeat compare
3BSX_A_C 3V74_A_B 0.89 0.85 1.99 0.56 ARM repeat compare
3K49_A_B 3V74_A_B 0.90 0.73 3.17 0.6 ARM repeat compare
3V74_A_B 5BZ1_A_B 0.68 0.82 2.09 0.33 ARM repeat compare
3V74_A_B 5WZJ_A_B 0.89 0.64 2.92 0.09 ARM repeat compare