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All interfaces > All interologs > Interface groups > group96 > 7O7Y_Ar_A2

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Ar
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Ar:23 [ARG] A2:1599 [G] 4.68 A2:1600 [U] 49.08
Ar:24 [ARG] A2:1603 [U] 3.49 A2:1534 [A] 48.62
Ar:24 [ARG] A2:1604 [G] 3.3 48.62
Ar:25 [LYS] A2:1597 [U] 3.57 A2:1538 [A] 45.06
Ar:25 [LYS] A2:1598 [C] 3.45 A2:1537 [G] 45.06
Ar:25 [LYS] A2:1604 [G] 3.17 45.06
Ar:28 [PHE] A2:1604 [G] 3.24 base/AA stacks 6.9
Ar:31 [THR] A2:1632 [U] 4.34 A2:1609 [U] 70.6
Ar:33 [ILE] A2:1632 [U] 3.46 A2:1609 [U] 84.57
Ar:34 [LYS] A2:1631 [A] 4.68 A2:1610 [C] 75.77
Ar:34 [LYS] A2:1632 [U] 3.68 A2:1609 [U] 75.77
Ar:34 [LYS] A2:1633 [G] 4.06 A2:1608 [A] 75.77
Ar:35 [GLY] A2:1631 [A] 3.18 A2:1610 [C] 98.84
Ar:35 [GLY] A2:1632 [U] 3.07 A2:1609 [U] 98.84
Ar:36 [VAL] A2:1631 [A] 3.54 A2:1610 [C] 81.21
Ar:36 [VAL] A2:1632 [U] 3.2 A2:1609 [U] 81.21
Ar:37 [GLY] A2:1631 [A] 3.11 A2:1610 [C] 80.59
Ar:37 [GLY] A2:1632 [U] 3.5 A2:1609 [U] 80.59
Ar:38 [ARG] A2:1604 [G] 3.32 0.82
Ar:38 [ARG] A2:1605 [G] 2.48 A2:1636 [C] 0.82
Ar:38 [ARG] A2:1607 [G] 3.57 A2:1634 [A] base:SC 0.82
Ar:38 [ARG] A2:1631 [A] 3.72 A2:1610 [C] 0.82
Ar:39 [ARG] A2:1629 [C] 4.88 A2:1612 [G] 61.1
Ar:39 [ARG] A2:1630 [C] 2.91 A2:1611 [G] 61.1
Ar:39 [ARG] A2:1631 [A] 3.34 A2:1610 [C] 61.1
Ar:40 [TYR] A2:1630 [C] 4.04 A2:1611 [G] 34.91
Ar:40 [TYR] A2:1631 [A] 2.69 A2:1610 [C] 34.91
Ar:41 [ALA] A2:1631 [A] 4.69 A2:1610 [C] 81.2
Ar:55 [ARG] A2:1598 [C] 4.18 A2:1537 [G] 59.2
Ar:55 [ARG] A2:1599 [G] 3.03 A2:1600 [U] 59.2
Ar:82 [TRP] A2:1568 [G] 3.33 base/AA stacks 59.64
Ar:82 [TRP] A2:1629 [C] 2.85 A2:1612 [G] sugar:BB 59.64
Ar:82 [TRP] A2:1630 [C] 3.67 A2:1611 [G] 59.64
Ar:83 [PHE] A2:1629 [C] 4.63 A2:1612 [G] 62.46
Ar:83 [PHE] A2:1630 [C] 3.04 A2:1611 [G] 62.46
Ar:84 [LEU] A2:1612 [G] 4.18 A2:1629 [C] 46.31
Ar:84 [LEU] A2:1630 [C] 3.41 A2:1611 [G] 46.31
Ar:85 [ASN] A2:1611 [G] 3.02 A2:1630 [C] base:BB 98.74
Ar:85 [ASN] A2:1612 [G] 3.76 A2:1629 [C] 98.74
Ar:85 [ASN] A2:1630 [C] 3.24 A2:1611 [G] 98.74
Ar:85 [ASN] A2:1631 [A] 3.37 A2:1610 [C] sugar:SC 98.74
Ar:86 [ARG] A2:1611 [G] 3.1 A2:1630 [C] sugar:SC 88.1
Ar:86 [ARG] A2:1612 [G] 3.63 A2:1629 [C] 88.1
Ar:87 [GLN] A2:1612 [G] 2.74 A2:1629 [C] sugar:BB 75.45
Ar:87 [GLN] A2:1613 [G] 2.9 A2:1628 [C] sugar:SC 75.45
Ar:87 [GLN] A2:1629 [C] 4.42 A2:1612 [G] 75.45
Ar:88 [LYS] A2:1612 [G] 4.36 A2:1629 [C] 65.56
Ar:88 [LYS] A2:1613 [G] 3.72 A2:1628 [C] 65.56
Ar:88 [LYS] A2:1614 [G] 2.94 A2:1627 [C] 65.56
Ar:90 [VAL] A2:1612 [G] 4.16 A2:1629 [C] 0.24
Ar:90 [VAL] A2:1613 [G] 3.56 A2:1628 [C] 0.24
Ar:97 [GLN] A2:1630 [C] 3.72 A2:1611 [G] sugar:SC 90.89
Ar:97 [GLN] A2:1631 [A] 3.74 A2:1610 [C] 90.89
Ar:103 [LEU] A2:1631 [A] 3.4 A2:1610 [C] 85.27
Ar:103 [LEU] A2:1632 [U] 3.94 A2:1609 [U] 85.27
Ar:107 [LEU] A2:1610 [C] 3.85 A2:1631 [A] 29.36
Ar:107 [LEU] A2:1611 [G] 3.55 A2:1630 [C] 29.36
Ar:110 [ASP] A2:1611 [G] 2.66 A2:1630 [C] sugar:SC 87.73
Ar:110 [ASP] A2:1612 [G] 3.98 A2:1629 [C] 87.73
Ar:111 [LEU] A2:1611 [G] 4.02 A2:1630 [C] 85.73
Ar:113 [ARG] A2:1612 [G] 3.13 A2:1629 [C] 77.8
Ar:114 [LEU] A2:1611 [G] 4.82 A2:1630 [C] 78.49
Ar:114 [LEU] A2:1612 [G] 4.88 A2:1629 [C] 78.49
Ar:120 [HIS] A2:1622 [U] 4.48 72.65
Ar:120 [HIS] A2:1623 [U] 2.56 base/AA stacks 72.65
Ar:121 [ARG] A2:1610 [C] 4.86 A2:1631 [A] 84.21
Ar:121 [ARG] A2:1611 [G] 2.61 A2:1630 [C] 84.21
Ar:121 [ARG] A2:1612 [G] 2.77 A2:1629 [C] 84.21
Ar:121 [ARG] A2:1623 [U] 3.76 84.21
Ar:124 [ARG] A2:1521 [G] 4.43 A2:1238 [C] 98.97
Ar:124 [ARG] A2:1522 [C] 2.81 A2:1237 [G] 98.97
Ar:125 [HIS] A2:1610 [C] 3.1 A2:1631 [A] 96.29
Ar:125 [HIS] A2:1611 [G] 2.69 A2:1630 [C] 96.29
Ar:129 [LEU] A2:1522 [C] 3.31 A2:1237 [G] 82.47
Ar:129 [LEU] A2:1523 [A] 3.91 82.47
Ar:129 [LEU] A2:1610 [C] 4.69 A2:1631 [A] 82.47
Ar:130 [ARG] A2:1230 [G] 4.69 A2:1530 [C] 87.38
Ar:130 [ARG] A2:1231 [C] 2.61 A2:1529 [G] 87.38
Ar:130 [ARG] A2:1608 [A] 4.84 A2:1633 [G] 87.38
Ar:130 [ARG] A2:1609 [U] 3.41 A2:1632 [U] 87.38
Ar:130 [ARG] A2:1610 [C] 3.54 A2:1631 [A] 87.38
Ar:131 [VAL] A2:1610 [C] 2.82 A2:1631 [A] 93.05
Ar:131 [VAL] A2:1611 [G] 3.87 A2:1630 [C] 93.05
Ar:131 [VAL] A2:1623 [U] 4.08 93.05
Ar:131 [VAL] A2:1624 [A] 4.38 93.05
Ar:132 [ARG] A2:1610 [C] 3.34 A2:1631 [A] base/AA stacks 98.16
Ar:132 [ARG] A2:1611 [G] 2.86 A2:1630 [C] base:SC 98.16
Ar:132 [ARG] A2:1623 [U] 4.92 98.16
Ar:132 [ARG] A2:1624 [A] 3.32 base/AA stacks 98.16
Ar:133 [GLY] A2:1520 [U] 4.16 98.76
Ar:133 [GLY] A2:1623 [U] 3.96 98.76
Ar:133 [GLY] A2:1624 [A] 3.19 98.76
Ar:134 [GLN] A2:1232 [C] 3.34 A2:1528 [C] 99.0
Ar:134 [GLN] A2:1609 [U] 3.35 A2:1632 [U] 99.0
Ar:134 [GLN] A2:1610 [C] 2.66 A2:1631 [A] 99.0
Ar:135 [HIS] A2:1232 [C] 4.11 A2:1528 [C] 83.0
Ar:135 [HIS] A2:1233 [PSU] 3.16 A2:1527 [G] 83.0
Ar:135 [HIS] A2:1234 [G] 4.0 A2:1526 [C] 83.0
Ar:135 [HIS] A2:1520 [U] 2.78 83.0
Ar:135 [HIS] A2:1521 [G] 3.55 A2:1238 [C] 83.0
Ar:136 [THR] A2:1520 [U] 4.89 98.79
Ar:136 [THR] A2:1521 [G] 2.83 A2:1238 [C] 98.79
Ar:136 [THR] A2:1522 [C] 2.13 A2:1237 [G] sugar:BB 98.79
Ar:137 [LYS] A2:1235 [C] 3.7 A2:1525 [G] 83.24
Ar:137 [LYS] A2:1236 [G] 3.18 A2:1524 [C] 83.24
Ar:137 [LYS] A2:1237 [G] 3.52 A2:1522 [C] 83.24
Ar:137 [LYS] A2:1521 [G] 2.99 A2:1238 [C] 83.24
Ar:137 [LYS] A2:1522 [C] 3.45 A2:1237 [G] 83.24
Ar:137 [LYS] A2:1524 [C] 3.02 A2:1236 [G] base:BB 83.24
Ar:137 [LYS] A2:1525 [G] 4.29 A2:1235 [C] 83.24
Ar:138 [THR] A2:1233 [PSU] 2.66 A2:1527 [G] base:SC 85.79
Ar:138 [THR] A2:1234 [G] 3.24 A2:1526 [C] 85.79
Ar:138 [THR] A2:1235 [C] 3.31 A2:1525 [G] 85.79
Ar:138 [THR] A2:1525 [G] 3.9 A2:1235 [C] 85.79
Ar:138 [THR] A2:1526 [C] 3.44 A2:1234 [G] 85.79
Ar:139 [THR] A2:1231 [C] 3.53 A2:1529 [G] 84.65
Ar:139 [THR] A2:1232 [C] 2.67 A2:1528 [C] 84.65
Ar:139 [THR] A2:1233 [PSU] 4.58 A2:1527 [G] 84.65
Ar:140 [GLY] A2:1231 [C] 3.27 A2:1529 [G] 75.71
Ar:141 [ARG] A2:1231 [C] 4.99 A2:1529 [G] 96.02
Ar:141 [ARG] A2:1236 [G] 4.83 A2:1524 [C] 96.02
Ar:141 [ARG] A2:1524 [C] 3.22 A2:1236 [G] base/AA stacks 96.02
Ar:141 [ARG] A2:1525 [G] 2.83 A2:1235 [C] base:SC, base:SC 96.02
Ar:141 [ARG] A2:1526 [C] 4.48 A2:1234 [G] 96.02
Ar:142 [ARG] A2:1229 [A] 4.82 A2:1531 [U] 67.23
Ar:142 [ARG] A2:1230 [G] 3.36 A2:1530 [C] 67.23
Ar:142 [ARG] A2:1634 [A] 4.42 A2:1607 [G] 67.23
Ar:142 [ARG] A2:1635 [A] 3.34 A2:1606 [G] 67.23
Ar:144 [ARG] A2:1523 [A] 2.96 43.53
Ar:144 [ARG] A2:1524 [C] 4.77 A2:1236 [G] 43.53
Ar:145 [THR] A2:1523 [A] 2.77 sugar:BB 70.27
Ar:145 [THR] A2:1524 [C] 3.1 A2:1236 [G] 70.27
Ar:146 [VAL] A2:1523 [A] 4.95 80.93
Ar:146 [VAL] A2:1524 [C] 4.11 A2:1236 [G] 80.93
Ar:147 [GLY] A2:1523 [A] 3.53 sugar:BB 90.13
Ar:147 [GLY] A2:1524 [C] 3.2 A2:1236 [G] 90.13
Ar:148 [VAL] A2:1524 [C] 3.44 A2:1236 [G] 97.74
Ar:148 [VAL] A2:1525 [G] 3.39 A2:1235 [C] 97.74
Ar:149 [SER] A2:1523 [A] 3.36 36.74
Ar:149 [SER] A2:1524 [C] 3.69 A2:1236 [G] sugar:BB 36.74

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group96 7O7Y_Ar_A2 Ar: 40s ribosomal protein s18, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) G1TPG3 H2TH Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_m_a 7O7Y_Ar_A2 0.43 0.89 4.78 0.07 H2TH compare
4W2F_AM_AA 7O7Y_Ar_A2 0.77 0.93 1.79 0.4 H2TH compare
4Y4O_1m_1a 7O7Y_Ar_A2 0.73 0.93 2.02 0.4 H2TH compare
7K00_M_A 7O7Y_Ar_A2 0.73 0.92 1.92 0.44 H2TH compare