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All interfaces > All interologs > Interface groups > group97 > 4W2F_BQ_AW

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4W2F_BQ
4W2F_AW
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BQ:1 [MET] AW:62 [C] 4.28 AW:52 [G] 73.08
BQ:1 [MET] AW:63 [G] 4.23 AW:51 [U] 73.08
BQ:48 [GLU] AW:53 [G] 3.53 AW:61 [C] sugar:SC 87.12
BQ:51 [ARG] AW:53 [G] 2.89 AW:61 [C] sugar:SC 85.02
BQ:51 [ARG] AW:54 [5MU] 3.04 AW:58 [A] 85.02
BQ:52 [VAL] AW:52 [G] 3.76 AW:62 [C] 69.32
BQ:52 [VAL] AW:53 [G] 4.26 AW:61 [C] 69.32
BQ:55 [VAL] AW:53 [G] 4.12 AW:61 [C] 62.0
BQ:55 [VAL] AW:54 [5MU] 4.38 AW:58 [A] 62.0
BQ:56 [ARG] AW:52 [G] 3.37 AW:62 [C] 78.68
BQ:56 [ARG] AW:53 [G] 3.4 AW:61 [C] 78.68
BQ:60 [ARG] AW:52 [G] 4.64 AW:62 [C] 74.1
BQ:60 [ARG] AW:53 [G] 2.8 AW:61 [C] 74.1
BQ:60 [ARG] AW:54 [5MU] 3.06 AW:58 [A] 74.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group97 4W2F_BQ_AW BQ: 50s ribosomal protein l16, Thermus thermophilus (natural) AW: A/p-site tRNA, Escherichia coli (genetically engineered) P60489 Ribosomal protein L10e tRNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4W2F_BQ_AW 7PJS_M_w 0.62 0.92 1.02 0.2 Ribosomal protein L10e tRNA compare
4W2F_BQ_AW 6XZ7_M_g 0.58 0.91 1.0 0.2 Ribosomal protein L10e tRNA compare
4W2F_BQ_AW 7N1P_LP_Pt 0.63 0.91 0.99 0.2 Ribosomal protein L10e tRNA compare
4W2F_BQ_AW 7K00_l_Y 0.57 0.91 1.19 0.2 Ribosomal protein L10e tRNA compare
4W2F_BQ_AW 6XHV_1Q_1w 0.93 0.99 0.5 0.8 Ribosomal protein L10e tRNA compare