Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 4W2F_BQ
|
4W2F_AW
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| BQ:1 [MET] | AW:62 [C] | 4.28 | AW:52 [G] | 73.08 | ||
| BQ:1 [MET] | AW:63 [G] | 4.23 | AW:51 [U] | 73.08 | ||
| BQ:48 [GLU] | AW:53 [G] | 3.53 | AW:61 [C] | sugar:SC | 87.12 | |
| BQ:51 [ARG] | AW:53 [G] | 2.89 | AW:61 [C] | sugar:SC | 85.02 | |
| BQ:51 [ARG] | AW:54 [5MU] | 3.04 | AW:58 [A] | 85.02 | ||
| BQ:52 [VAL] | AW:52 [G] | 3.76 | AW:62 [C] | 69.32 | ||
| BQ:52 [VAL] | AW:53 [G] | 4.26 | AW:61 [C] | 69.32 | ||
| BQ:55 [VAL] | AW:53 [G] | 4.12 | AW:61 [C] | 62.0 | ||
| BQ:55 [VAL] | AW:54 [5MU] | 4.38 | AW:58 [A] | 62.0 | ||
| BQ:56 [ARG] | AW:52 [G] | 3.37 | AW:62 [C] | 78.68 | ||
| BQ:56 [ARG] | AW:53 [G] | 3.4 | AW:61 [C] | 78.68 | ||
| BQ:60 [ARG] | AW:52 [G] | 4.64 | AW:62 [C] | 74.1 | ||
| BQ:60 [ARG] | AW:53 [G] | 2.8 | AW:61 [C] | 74.1 | ||
| BQ:60 [ARG] | AW:54 [5MU] | 3.06 | AW:58 [A] | 74.1 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group97 | 4W2F_BQ_AW | BQ: 50s ribosomal protein l16, Thermus thermophilus (natural) AW: A/p-site tRNA, Escherichia coli (genetically engineered) | P60489 | Ribosomal protein L10e | tRNA | ✔ |
|
Interologs
Total number of interologs for this interface: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4W2F_BQ_AW | 7PJS_M_w | 0.62 | 0.92 | 1.02 | 0.2 | Ribosomal protein L10e | tRNA | compare |
| 4W2F_BQ_AW | 6XZ7_M_g | 0.58 | 0.91 | 1.0 | 0.2 | Ribosomal protein L10e | tRNA | compare |
| 4W2F_BQ_AW | 7N1P_LP_Pt | 0.63 | 0.91 | 0.99 | 0.2 | Ribosomal protein L10e | tRNA | compare |
| 4W2F_BQ_AW | 7K00_l_Y | 0.57 | 0.91 | 1.19 | 0.2 | Ribosomal protein L10e | tRNA | compare |
| 4W2F_BQ_AW | 6XHV_1Q_1w | 0.93 | 0.99 | 0.5 | 0.8 | Ribosomal protein L10e | tRNA | compare |