Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6XHV_1Q
|
6XHV_1w
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| 1Q:1 [MET] | 1w:62 [C] | 4.92 | 1w:52 [G] | 73.0 | ||
| 1Q:48 [GLU] | 1w:53 [G] | 3.73 | 1w:61 [C] | 87.1 | ||
| 1Q:51 [ARG] | 1w:53 [G] | 2.6 | 1w:61 [C] | sugar:SC | 85.0 | |
| 1Q:51 [ARG] | 1w:54 [5MU] | 2.8 | 1w:58 [A] | 85.0 | ||
| 1Q:52 [VAL] | 1w:52 [G] | 3.66 | 1w:62 [C] | 69.3 | ||
| 1Q:52 [VAL] | 1w:53 [G] | 4.0 | 1w:61 [C] | 69.3 | ||
| 1Q:55 [VAL] | 1w:53 [G] | 4.13 | 1w:61 [C] | 62.0 | ||
| 1Q:55 [VAL] | 1w:54 [5MU] | 4.72 | 1w:58 [A] | 62.0 | ||
| 1Q:56 [ARG] | 1w:52 [G] | 3.3 | 1w:62 [C] | 78.6 | ||
| 1Q:56 [ARG] | 1w:53 [G] | 3.16 | 1w:61 [C] | 78.6 | ||
| 1Q:60 [ARG] | 1w:52 [G] | 4.93 | 1w:62 [C] | 74.1 | ||
| 1Q:60 [ARG] | 1w:53 [G] | 2.88 | 1w:61 [C] | 74.1 | ||
| 1Q:60 [ARG] | 1w:54 [5MU] | 2.3 | 1w:58 [A] | 74.1 | ||
| 1Q:60 [ARG] | 1w:55 [PSU] | 3.67 | 1w:18 [G] | base:SC | 74.1 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group97 | 6XHV_1Q_1w | 1Q: 50s ribosomal protein l16, Thermus thermophilus hb8 (natural) 1w: A-site tRNA, Escherichia coli (synthetic) | P60489 | Ribosomal protein L10e | tRNA | ✔ |
|
Interologs
Total number of interologs for this interface: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4W2F_BQ_AW | 6XHV_1Q_1w | 0.93 | 0.99 | 0.5 | 0.8 | Ribosomal protein L10e | tRNA | compare |
| 6XHV_1Q_1w | 7N1P_LP_Pt | 0.64 | 0.91 | 1.18 | 0.2 | Ribosomal protein L10e | tRNA | compare |
| 6XHV_1Q_1w | 6XZ7_M_g | 0.60 | 0.9 | 1.19 | 0.2 | Ribosomal protein L10e | tRNA | compare |
| 6XHV_1Q_1w | 7PJS_M_w | 0.63 | 0.91 | 1.24 | 0.2 | Ribosomal protein L10e | tRNA | compare |
| 6XHV_1Q_1w | 7K00_l_Y | 0.59 | 0.9 | 1.4 | 0.2 | Ribosomal protein L10e | tRNA | compare |