Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6XHV_1Q
|
6XHV_1w
|
7K00_l
|
7K00_Y
|
Conserved?
|
---|---|---|---|---|
1Q:51 [ARG] | 1w:53 [G] | l:50 [ARG] | Y:54 [U] | ✔ |
1Q:51 [ARG] | 1w:54 [5MU] | l:50 [ARG] | Y:55 [U] | ✔ |
1Q:60 [ARG] | 1w:54 [5MU] | l:59 [ARG] | Y:55 [U] | ✔ |
1Q:52 [VAL] | 1w:53 [G] | l:51 [ARG] | Y:54 [U] | ✔ |
1Q:48 [GLU] | 1w:53 [G] | l:47 [GLU] | Y:54 [U] | ✔ |
1Q:55 [VAL] | 1w:54 [5MU] | l:54 [THR] | Y:55 [U] | ✔ |
1Q:56 [ARG] | 1w:52 [G] | l:55 [ARG] | Y:53 [G] | ✔ |
1Q:56 [ARG] | 1w:53 [G] | l:55 [ARG] | Y:54 [U] | ✔ |
1Q:60 [ARG] | 1w:52 [G] | l:59 [ARG] | Y:53 [G] | ❌ 7K00_l_Y |
1Q:60 [ARG] | 1w:53 [G] | l:59 [ARG] | Y:54 [U] | ❌ 7K00_l_Y |
1Q:52 [VAL] | 1w:52 [G] | l:51 [ARG] | Y:53 [G] | ❌ 7K00_l_Y |
1Q:55 [VAL] | 1w:53 [G] | l:54 [THR] | Y:54 [U] | ❌ 7K00_l_Y |
1Q:1 [MET] | 1w:62 [C] | l:1 [MET] | Y:61 [C] | ❌ 7K00_l:1, 7K00_Y:61 no longer at interface |
1Q:60 [ARG] | 1w:57 [G] | l:59 [ARG] | Y:57 [G] | ❌ 6XHV_1w:57 no longer at interface |
1Q:60 [ARG] | 1w:56 [C] | l:59 [ARG] | Y:56 [C] | ❌ 6XHV_1w:56 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L10e | tRNA | 0.9 | 1.4 | 0.20 | 0.97 | 0.66 | 1.0 | 0.6 | 0.59 | 0.38 | 0.25 | 0.43 |
Other pairs involving 6XHV_1Q_1w or 7K00_l_Y
Total number of entries: 6
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
4W2F_BQ_AW | 7K00_l_Y | 0.57 | 0.91 | 1.19 | 0.2 | Ribosomal protein L10e | tRNA | compare |
4W2F_BQ_AW | 6XHV_1Q_1w | 0.93 | 0.99 | 0.5 | 0.8 | Ribosomal protein L10e | tRNA | compare |
6XHV_1Q_1w | 7N1P_LP_Pt | 0.64 | 0.91 | 1.18 | 0.2 | Ribosomal protein L10e | tRNA | compare |
6XHV_1Q_1w | 7PJS_M_w | 0.63 | 0.91 | 1.24 | 0.2 | Ribosomal protein L10e | tRNA | compare |
6XHV_1Q_1w | 6XZ7_M_g | 0.60 | 0.9 | 1.19 | 0.2 | Ribosomal protein L10e | tRNA | compare |
6XHV_1Q_1w | 7K00_l_Y | 0.59 | 0.9 | 1.4 | 0.2 | Ribosomal protein L10e | tRNA | compare |