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All interfaces > All interologs > Interface groups > group97 > 7K00_l_Y

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

7K00_l
7K00_Y
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
l:47 [GLU] Y:54 [U] 4.05 Y:58 [A] 85.56
l:50 [ARG] Y:54 [U] 3.38 Y:58 [A] 87.13
l:50 [ARG] Y:55 [U] 3.32 Y:18 [G] 87.13
l:51 [ARG] Y:54 [U] 3.18 Y:58 [A] sugar:SC 63.27
l:54 [THR] Y:55 [U] 3.94 Y:18 [G] 45.71
l:55 [ARG] Y:53 [G] 4.02 Y:61 [C] 78.2
l:55 [ARG] Y:54 [U] 3.42 Y:58 [A] 78.2
l:59 [ARG] Y:55 [U] 3.84 Y:18 [G] 69.0
l:59 [ARG] Y:56 [C] 3.45 Y:19 [G] 69.0
l:59 [ARG] Y:57 [G] 2.76 69.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group97 7K00_l_Y l: 50s ribosomal protein l16, Escherichia coli (natural) Y: A-site tRNA-val, Escherichia coli (synthetic) P0ADY7 Ribosomal protein L10e tRNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4W2F_BQ_AW 7K00_l_Y 0.57 0.91 1.19 0.2 Ribosomal protein L10e tRNA compare
6XHV_1Q_1w 7K00_l_Y 0.59 0.9 1.4 0.2 Ribosomal protein L10e tRNA compare