RNAprotDB

Interface analysis

Contacts -

7N1P_LP	7N1P_Pt	Distance	Base Pair	Base Stacking	Residue conservation
LP:47 [GLU]	Pt:54 [5MU]	4.2	Pt:58 [A]		83.02
LP:50 [ARG]	Pt:54 [5MU]	3.01	Pt:58 [A]		85.86
LP:50 [ARG]	Pt:55 [PSU]	2.85	Pt:18 [G]		85.86
LP:51 [ARG]	Pt:53 [G]	4.04	Pt:61 [C]		62.17
LP:51 [ARG]	Pt:54 [5MU]	3.19	Pt:58 [A]		62.17
LP:54 [THR]	Pt:55 [PSU]	3.3	Pt:18 [G]		35.86
LP:55 [ARG]	Pt:52 [G]	4.83	Pt:62 [C]		80.18
LP:55 [ARG]	Pt:53 [G]	2.75	Pt:61 [C]		80.18
LP:55 [ARG]	Pt:54 [5MU]	3.18	Pt:58 [A]		80.18
LP:59 [ARG]	Pt:55 [PSU]	3.51	Pt:18 [G]	base/AA stacks	67.53
LP:59 [ARG]	Pt:56 [C]	3.09	Pt:19 [G]		67.53
LP:59 [ARG]	Pt:57 [G]	2.47			67.53

Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID	Structure ID	Structure description	UniProt ID	ECOD label(s)	RFAM label(s)	Is ribosome?	RCSB PDB link
group97	7N1P_LP_Pt	LP: 50s ribosomal protein l16, Escherichia coli (strain k12) (natural) Pt: tRNA, Escherichia coli k-12 (genetically engineered)	P0ADY7	Ribosomal protein L10e	tRNA	✔

Interologs

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
6XZ7_M_g	7N1P_LP_Pt	0.95	0.98	0.31	1.0	Ribosomal protein L10e	tRNA	compare
6XHV_1Q_1w	7N1P_LP_Pt	0.64	0.91	1.18	0.2	Ribosomal protein L10e	tRNA	compare
4W2F_BQ_AW	7N1P_LP_Pt	0.63	0.91	0.99	0.2	Ribosomal protein L10e	tRNA	compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

6XZ7_M_g

7N1P_LP_Pt

0.95