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All interfaces > All interologs > Interface groups > group98 > 4Y4O_15_1A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_15
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
15:2 [ALA] 1A:2589 [A] 3.39 50.35
15:2 [ALA] 1A:2591 [C] 3.92 1A:2521 [G] 50.35
15:2 [ALA] 1A:2623 [U] 3.38 50.35
15:2 [ALA] 1A:2624 [C] 2.57 50.35
15:2 [ALA] 1A:2625 [U] 3.46 1A:2035 [A] 50.35
15:3 [LYS] 1A:2078 [G] 3.0 base:BB, base:BB 75.56
15:3 [LYS] 1A:2079 [A] 3.19 75.56
15:3 [LYS] 1A:2517 [G] 2.83 base:SC 75.56
15:3 [LYS] 1A:2588 [G] 3.06 sugar:SC 75.56
15:3 [LYS] 1A:2589 [A] 2.6 sugar:BB 75.56
15:3 [LYS] 1A:2623 [U] 3.28 75.56
15:3 [LYS] 1A:2625 [U] 4.94 1A:2035 [A] 75.56
15:4 [HIS] 1A:794 [U] 3.45 1A:2036 [A] base/AA stacks 82.33
15:4 [HIS] 1A:2037 [A] 2.84 1A:1310 [G] base:SC 82.33
15:4 [HIS] 1A:2078 [G] 2.98 base:BB 82.33
15:4 [HIS] 1A:2079 [A] 3.91 82.33
15:4 [HIS] 1A:2589 [A] 4.22 82.33
15:4 [HIS] 1A:2623 [U] 3.9 82.33
15:4 [HIS] 1A:2625 [U] 4.03 1A:2035 [A] 82.33
15:5 [PRO] 1A:794 [U] 4.98 1A:2036 [A] 74.99
15:5 [PRO] 1A:2037 [A] 3.73 1A:1310 [G] 74.99
15:5 [PRO] 1A:2078 [G] 3.44 74.99
15:5 [PRO] 1A:2589 [A] 3.9 74.99
15:5 [PRO] 1A:2625 [U] 3.79 1A:2035 [A] 74.99
15:5 [PRO] 1A:2626 [A] 3.4 74.99
15:5 [PRO] 1A:2627 [U] 4.27 1A:2076 [A] 74.99
15:6 [VAL] 1A:2037 [A] 3.4 1A:1310 [G] 63.47
15:6 [VAL] 1A:2038 [U] 3.12 1A:1309 [U] 63.47
15:6 [VAL] 1A:2076 [A] 4.82 1A:2627 [U] 63.47
15:6 [VAL] 1A:2078 [G] 4.26 63.47
15:6 [VAL] 1A:2079 [A] 3.76 63.47
15:6 [VAL] 1A:2626 [A] 4.84 63.47
15:6 [VAL] 1A:2627 [U] 2.92 1A:2076 [A] 63.47
15:7 [PRO] 1A:1310 [G] 3.26 1A:2037 [A] 91.26
15:7 [PRO] 1A:2037 [A] 3.53 1A:1310 [G] 91.26
15:7 [PRO] 1A:2038 [U] 2.52 1A:1309 [U] sugar:BB 91.26
15:7 [PRO] 1A:2039 [U] 4.19 1A:1308 [A] 91.26
15:7 [PRO] 1A:2627 [U] 3.45 1A:2076 [A] 91.26
15:8 [LYS] 1A:2038 [U] 4.45 1A:1309 [U] 80.12
15:8 [LYS] 1A:2039 [U] 3.16 1A:1308 [A] 80.12
15:8 [LYS] 1A:2040 [G] 4.33 1A:556 [C] 80.12
15:8 [LYS] 1A:2076 [A] 3.39 1A:2627 [U] 80.12
15:8 [LYS] 1A:2077 [C] 2.69 1A:2511 [C] 80.12
15:8 [LYS] 1A:2078 [G] 2.91 sugar:SC 80.12
15:8 [LYS] 1A:2079 [A] 4.05 80.12
15:8 [LYS] 1A:2627 [U] 3.18 1A:2076 [A] base:BB 80.12
15:9 [LYS] 1A:1309 [U] 4.51 1A:2038 [U] 63.11
15:9 [LYS] 1A:2039 [U] 3.32 1A:1308 [A] 63.11
15:9 [LYS] 1A:2040 [G] 2.95 1A:556 [C] 63.11
15:9 [LYS] 1A:2041 [A] 2.93 1A:2057 [G] base:SC 63.11
15:9 [LYS] 1A:2042 [A] 3.59 1A:2056 [U] 63.11
15:9 [LYS] 1A:2044 [U] 3.43 63.11
15:9 [LYS] 1A:2627 [U] 4.45 1A:2076 [A] 63.11
15:10 [LYS] 1A:602 [G] 4.33 1A:1307 [C] 82.67
15:10 [LYS] 1A:1308 [A] 2.9 1A:2039 [U] base:SC, sugar:SC 82.67
15:10 [LYS] 1A:1309 [U] 3.43 1A:2038 [U] 82.67
15:10 [LYS] 1A:2039 [U] 2.89 1A:1308 [A] sugar:BB 82.67
15:10 [LYS] 1A:2041 [A] 4.29 1A:2057 [G] 82.67
15:10 [LYS] 1A:2044 [U] 4.99 82.67
15:11 [THR] 1A:1309 [U] 3.01 1A:2038 [U] sugar:BB 67.89
15:11 [THR] 1A:1310 [G] 3.36 1A:2037 [A] 67.89
15:11 [THR] 1A:2627 [U] 4.22 1A:2076 [A] 67.89
15:12 [SER] 1A:2042 [A] 3.74 1A:2056 [U] 93.17
15:12 [SER] 1A:2043 [C] 2.58 93.17
15:13 [LYS] 1A:16 [G] 4.85 1A:549 [U] 64.35
15:13 [LYS] 1A:17 [G] 3.98 1A:548 [C] 64.35
15:13 [LYS] 1A:541 [C] 2.64 1A:24 [G] 64.35
15:13 [LYS] 1A:542 [C] 3.3 1A:23 [G] 64.35
15:14 [ALA] 1A:16 [G] 3.37 1A:549 [U] 70.63
15:14 [ALA] 1A:17 [G] 3.44 1A:548 [C] 70.63
15:14 [ALA] 1A:2043 [C] 4.0 70.63
15:15 [ARG] 1A:2043 [C] 3.02 79.88
15:15 [ARG] 1A:2044 [U] 2.9 79.88
15:15 [ARG] 1A:2068 [G] 4.14 1A:2634 [C] 79.88
15:15 [ARG] 1A:2628 [C] 3.89 1A:2075 [G] 79.88
15:15 [ARG] 1A:2629 [C] 4.35 1A:2074 [G] 79.88
15:16 [ARG] 1A:541 [C] 4.58 1A:24 [G] 49.62
15:16 [ARG] 1A:542 [C] 2.33 1A:23 [G] 49.62
15:16 [ARG] 1A:543 [G] 4.59 1A:22 [C] 49.62
15:16 [ARG] 1A:1308 [A] 4.63 1A:2039 [U] 49.62
15:16 [ARG] 1A:1309 [U] 2.88 1A:2038 [U] 49.62
15:16 [ARG] 1A:1310 [G] 3.91 1A:2037 [A] 49.62
15:16 [ARG] 1A:1312 [G] 4.9 1A:1313 [U] 49.62
15:17 [ASP] 1A:15 [G] 3.97 1A:550 [U] 63.33
15:17 [ASP] 1A:16 [G] 3.46 1A:549 [U] 63.33
15:17 [ASP] 1A:543 [G] 4.47 1A:22 [C] 63.33
15:18 [ALA] 1A:15 [G] 3.39 1A:550 [U] 26.46
15:18 [ALA] 1A:16 [G] 3.99 1A:549 [U] 26.46
15:18 [ALA] 1A:2067 [C] 2.89 1A:2635 [G] sugar:BB 26.46
15:18 [ALA] 1A:2068 [G] 3.8 1A:2634 [C] 26.46
15:19 [ARG] 1A:1309 [U] 4.78 1A:2038 [U] 87.81
15:19 [ARG] 1A:1310 [G] 2.66 1A:2037 [A] 87.81
15:19 [ARG] 1A:1311 [A] 3.76 87.81
15:19 [ARG] 1A:1312 [G] 2.98 1A:1313 [U] 87.81
15:19 [ARG] 1A:2067 [C] 4.43 1A:2635 [G] 87.81
15:19 [ARG] 1A:2068 [G] 3.35 1A:2634 [C] 87.81
15:19 [ARG] 1A:2069 [U] 3.66 1A:2633 [A] 87.81
15:20 [ARG] 1A:15 [G] 4.82 1A:550 [U] 83.5
15:20 [ARG] 1A:1309 [U] 4.89 1A:2038 [U] 83.5
15:20 [ARG] 1A:1310 [G] 4.2 1A:2037 [A] 83.5
15:20 [ARG] 1A:1311 [A] 3.52 sugar:SC 83.5
15:20 [ARG] 1A:1312 [G] 2.66 1A:1313 [U] 83.5
15:21 [SER] 1A:14 [A] 2.58 1A:13 [A] sugar:BB 71.02
15:21 [SER] 1A:15 [G] 3.34 1A:550 [U] 71.02
15:21 [SER] 1A:2067 [C] 3.05 1A:2635 [G] sugar:SC 71.02
15:22 [HIS] 1A:14 [A] 4.64 1A:13 [A] 68.71
15:22 [HIS] 1A:2067 [C] 2.83 1A:2635 [G] base:SC, sugar:SC 68.71
15:22 [HIS] 1A:2068 [G] 3.36 1A:2634 [C] sugar:SC 68.71
15:22 [HIS] 1A:2635 [G] 3.4 1A:2067 [C] 68.71
15:22 [HIS] 1A:2636 [G] 3.73 1A:2066 [C] sugar:SC 68.71
15:23 [HIS] 1A:1312 [G] 3.33 1A:1313 [U] 5.44
15:24 [ALA] 1A:15 [G] 3.56 1A:550 [U] 60.37
15:29 [THR] 1A:2824 [C] 3.01 1A:2896 [G] 42.24
15:29 [THR] 1A:2825 [C] 3.48 1A:2841 [G] sugar:SC 42.24
15:30 [LEU] 1A:2897 [U] 4.29 1A:2823 [A] 0.0
15:31 [VAL] 1A:2894 [U] 4.59 0.0
15:31 [VAL] 1A:2895 [C] 3.76 0.0
15:31 [VAL] 1A:2896 [G] 3.28 1A:2824 [C] 0.0
15:31 [VAL] 1A:2897 [U] 4.01 1A:2823 [A] 0.0
15:32 [PRO] 1A:2895 [C] 4.35 0.0
15:32 [PRO] 1A:2896 [G] 3.59 1A:2824 [C] 0.0
15:32 [PRO] 1A:2897 [U] 4.16 1A:2823 [A] 0.0
15:34 [PRO] 1A:2895 [C] 3.44 0.0
15:40 [LYS] 1A:2894 [U] 3.24 base:SC 0.0
15:41 [PRO] 1A:2894 [U] 4.65 42.3
15:42 [PRO] 1A:2825 [C] 3.46 1A:2841 [G] 70.99
15:42 [PRO] 1A:2826 [C] 4.92 1A:2840 [G] 70.99
15:42 [PRO] 1A:2894 [U] 3.55 70.99
15:42 [PRO] 1A:2895 [C] 4.17 70.99
15:42 [PRO] 1A:2896 [G] 4.97 1A:2824 [C] 70.99
15:43 [HIS] 1A:2825 [C] 2.81 1A:2841 [G] sugar:SC 99.0
15:43 [HIS] 1A:2826 [C] 3.36 1A:2840 [G] 99.0
15:43 [HIS] 1A:2841 [G] 3.44 1A:2825 [C] 99.0
15:43 [HIS] 1A:2893 [A] 3.3 1A:2844 [G] 99.0
15:43 [HIS] 1A:2894 [U] 2.76 base:BB 99.0
15:43 [HIS] 1A:2895 [C] 3.46 base/AA stacks 99.0
15:44 [THR] 1A:2894 [U] 4.38 52.92
15:52 [TYR] 1A:2892 [A] 4.96 1A:2846 [U] 91.97
15:52 [TYR] 1A:2893 [A] 2.74 1A:2844 [G] 91.97
15:52 [TYR] 1A:2894 [U] 3.25 base/AA stacks 91.97
15:53 [ALA] 1A:2894 [U] 2.92 base:BB 59.62
15:54 [GLY] 1A:2894 [U] 4.71 0.0
15:55 [ARG] 1A:2892 [A] 4.16 1A:2846 [U] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group98 4Y4O_15_1A 15: 50s ribosomal protein l32, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P80339 Rubredoxin-related Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_15_1A 6S0Z_Z_A 0.91 0.96 1.31 0.42 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_15_1A 7OF0_0_A 0.74 0.93 1.15 0.14 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_15_1A 7RYG_Z_A 0.87 0.96 1.43 0.39 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_15_1A 7OF7_0_A 0.77 0.94 1.15 0.14 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_15_1A 7K00_z_a 0.89 0.96 1.33 0.35 Rubredoxin-related Bacterial large subunit ribosomal RNA compare