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All interfaces > All interologs > Interface groups > group99 > 4Y4O_1R_1A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1R
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1R:1 [MET] 1A:1700 [G] 4.02 97.66
1R:1 [MET] 1A:1701 [A] 2.36 97.66
1R:1 [MET] 1A:2021 [C] 4.82 1A:1708 [G] 97.66
1R:1 [MET] 1A:2022 [G] 4.63 1A:1707 [C] 97.66
1R:1 [MET] 1A:2736 [C] 3.23 1A:2698 [G] 97.66
1R:1 [MET] 1A:2737 [C] 3.57 1A:2697 [G] 97.66
1R:2 [ARG] 1A:1700 [G] 3.2 73.0
1R:2 [ARG] 1A:1701 [A] 3.81 73.0
1R:2 [ARG] 1A:2735 [G] 4.68 1A:2699 [U] 73.0
1R:2 [ARG] 1A:2829 [G] 4.62 1A:2837 [C] 73.0
1R:2 [ARG] 1A:2830 [A] 2.47 73.0
1R:2 [ARG] 1A:2831 [A] 3.25 1A:2836 [A] 73.0
1R:2 [ARG] 1A:2832 [G] 2.88 base:SC, base:SC 73.0
1R:3 [HIS] 1A:2735 [G] 2.79 1A:2699 [U] sugar:BB 80.42
1R:3 [HIS] 1A:2736 [C] 2.29 1A:2698 [G] 80.42
1R:3 [HIS] 1A:2830 [A] 3.21 80.42
1R:3 [HIS] 1A:2831 [A] 3.13 1A:2836 [A] 80.42
1R:3 [HIS] 1A:2832 [G] 4.65 80.42
1R:4 [LEU] 1A:2734 [A] 4.07 1A:2700 [U] 67.29
1R:4 [LEU] 1A:2735 [G] 3.85 1A:2699 [U] 67.29
1R:4 [LEU] 1A:2829 [G] 4.33 1A:2837 [C] 67.29
1R:4 [LEU] 1A:2830 [A] 3.05 67.29
1R:4 [LEU] 1A:2883 [A] 3.82 1A:2733 [U] 67.29
1R:4 [LEU] 1A:2884 [C] 3.87 1A:2853 [G] 67.29
1R:5 [LYS] 1A:2021 [C] 4.81 1A:1708 [G] 32.43
1R:5 [LYS] 1A:2022 [G] 2.64 1A:1707 [C] 32.43
1R:5 [LYS] 1A:2734 [A] 4.11 1A:2700 [U] 32.43
1R:5 [LYS] 1A:2735 [G] 4.59 1A:2699 [U] 32.43
1R:5 [LYS] 1A:2830 [A] 4.22 32.43
1R:5 [LYS] 1A:2883 [A] 3.67 1A:2733 [U] 32.43
1R:6 [SER] 1A:2848 [G] 3.85 1A:2890 [C] 39.64
1R:6 [SER] 1A:2882 [G] 3.87 1A:2732 [G] 39.64
1R:6 [SER] 1A:2883 [A] 3.02 1A:2733 [U] base:BB 39.64
1R:8 [ARG] 1A:1699 [A] 2.96 1A:2027 [A] 45.26
1R:8 [ARG] 1A:2828 [G] 4.88 1A:2838 [C] 45.26
1R:9 [LYS] 1A:1700 [G] 3.45 69.52
1R:9 [LYS] 1A:2023 [A] 2.62 1A:1706 [U] 69.52
1R:9 [LYS] 1A:2024 [G] 2.63 1A:1705 [C] 69.52
1R:10 [LEU] 1A:1698 [G] 4.22 1A:2028 [C] 72.69
1R:10 [LEU] 1A:1699 [A] 3.84 1A:2027 [A] 72.69
1R:10 [LEU] 1A:1700 [G] 3.41 72.69
1R:11 [ASN] 1A:1698 [G] 3.2 1A:2028 [C] 60.43
1R:11 [ASN] 1A:1699 [A] 2.63 1A:2027 [A] base:SC, base:SC 60.43
1R:11 [ASN] 1A:1700 [G] 3.03 base:BB 60.43
1R:11 [ASN] 1A:2025 [G] 3.48 1A:1704 [C] 60.43
1R:12 [ARG] 1A:1322 [A] 3.16 1A:1340 [U] sugar:SC, sugar:SC 81.43
1R:12 [ARG] 1A:1323 [G] 3.91 1A:1339 [C] 81.43
1R:12 [ARG] 1A:1697 [G] 4.56 1A:2029 [C] 81.43
1R:12 [ARG] 1A:1698 [G] 4.35 1A:2028 [C] 81.43
1R:12 [ARG] 1A:2024 [G] 4.01 1A:1705 [C] 81.43
1R:12 [ARG] 1A:2025 [G] 4.64 1A:1704 [C] 81.43
1R:13 [HIS] 1A:1321 [A] 3.67 base:SC 33.07
1R:13 [HIS] 1A:2024 [G] 3.73 1A:1705 [C] 33.07
1R:13 [HIS] 1A:2725 [A] 3.57 33.07
1R:13 [HIS] 1A:2726 [A] 3.88 33.07
1R:14 [SER] 1A:2701 [U] 4.35 55.41
1R:14 [SER] 1A:2702 [C] 3.13 55.41
1R:14 [SER] 1A:2725 [A] 4.76 55.41
1R:14 [SER] 1A:2726 [A] 2.68 55.41
1R:15 [SER] 1A:1321 [A] 3.82 30.76
1R:15 [SER] 1A:2722 [C] 3.42 1A:2709 [G] 30.76
1R:15 [SER] 1A:2725 [A] 4.98 30.76
1R:15 [SER] 1A:2726 [A] 4.67 30.76
1R:16 [HIS] 1A:1321 [A] 3.19 base/AA stacks 59.67
1R:16 [HIS] 1A:1322 [A] 2.63 1A:1340 [U] sugar:SC 59.67
1R:17 [ARG] 1A:2024 [G] 3.45 1A:1705 [C] 87.66
1R:17 [ARG] 1A:2701 [U] 4.52 87.66
1R:17 [ARG] 1A:2702 [C] 2.48 87.66
1R:18 [LEU] 1A:2721 [G] 3.76 1A:2710 [U] 38.35
1R:19 [ALA] 1A:1321 [A] 3.77 80.88
1R:19 [ALA] 1A:1341 [C] 3.24 1A:1692 [G] 80.88
1R:20 [LEU] 1A:1322 [A] 4.31 1A:1340 [U] 80.5
1R:20 [LEU] 1A:1323 [G] 3.49 1A:1339 [C] 80.5
1R:22 [ARG] 1A:2720 [G] 3.15 1A:2711 [C] 84.36
1R:22 [ARG] 1A:2721 [G] 2.97 1A:2710 [U] 84.36
1R:23 [ASN] 1A:1322 [A] 3.87 1A:1340 [U] 73.29
1R:23 [ASN] 1A:1323 [G] 4.67 1A:1339 [C] 73.29
1R:23 [ASN] 1A:1340 [U] 2.67 1A:1322 [A] sugar:SC 73.29
1R:23 [ASN] 1A:1341 [C] 3.03 1A:1692 [G] sugar:SC 73.29
1R:24 [GLN] 1A:1323 [G] 3.07 1A:1339 [C] sugar:SC 84.24
1R:24 [GLN] 1A:1324 [A] 3.99 1A:1338 [U] 84.24
1R:26 [LYS] 1A:1340 [U] 3.01 1A:1322 [A] sugar:SC 58.62
1R:26 [LYS] 1A:1341 [C] 4.3 1A:1692 [G] 58.62
1R:27 [SER] 1A:1323 [G] 3.97 1A:1339 [C] base:SC 75.22
1R:27 [SER] 1A:1324 [A] 3.28 1A:1338 [U] sugar:SC 75.22
1R:31 [HIS] 1A:1324 [A] 3.81 1A:1338 [U] 63.67
1R:31 [HIS] 1A:1325 [G] 3.27 1A:1337 [C] 63.67
1R:33 [ARG] 1A:1325 [G] 4.59 1A:1337 [C] 44.26
1R:34 [ILE] 1A:1324 [A] 3.48 1A:1338 [U] 89.0
1R:34 [ILE] 1A:1325 [G] 3.51 1A:1337 [C] 89.0
1R:35 [THR] 1A:1324 [A] 3.5 1A:1338 [U] 33.97
1R:35 [THR] 1A:1325 [G] 2.82 1A:1337 [C] 33.97
1R:36 [THR] 1A:1323 [G] 3.93 1A:1339 [C] 98.97
1R:36 [THR] 1A:1324 [A] 2.99 1A:1338 [U] 98.97
1R:37 [THR] 1A:1324 [A] 4.65 1A:1338 [U] 98.92
1R:37 [THR] 1A:1697 [G] 3.53 1A:2029 [C] 98.92
1R:37 [THR] 1A:1698 [G] 2.56 1A:2028 [C] 98.92
1R:39 [PRO] 1A:1698 [G] 3.71 1A:2028 [C] 69.84
1R:39 [PRO] 1A:1699 [A] 4.06 1A:2027 [A] 69.84
1R:40 [LYS] 1A:1323 [G] 4.27 1A:1339 [C] 83.73
1R:40 [LYS] 1A:1697 [G] 3.62 1A:2029 [C] 83.73
1R:40 [LYS] 1A:1698 [G] 2.7 1A:2028 [C] 83.73
1R:42 [LYS] 1A:2827 [G] 2.8 1A:2839 [C] 86.83
1R:42 [LYS] 1A:2828 [G] 2.66 1A:2838 [C] 86.83
1R:42 [LYS] 1A:2848 [G] 4.87 1A:2890 [C] 86.83
1R:45 [ARG] 1A:2828 [G] 3.71 1A:2838 [C] 56.4
1R:45 [ARG] 1A:2847 [G] 3.61 1A:2891 [C] 56.4
1R:45 [ARG] 1A:2848 [G] 3.6 1A:2890 [C] 56.4
1R:45 [ARG] 1A:2891 [C] 4.67 1A:2847 [G] 56.4
1R:45 [ARG] 1A:2892 [A] 4.89 1A:2846 [U] 56.4
1R:46 [GLY] 1A:2848 [G] 4.0 1A:2890 [C] 43.9
1R:46 [GLY] 1A:2849 [G] 3.36 1A:2888 [U] 43.9
1R:49 [ASP] 1A:2849 [G] 2.62 1A:2888 [U] sugar:SC 82.73
1R:49 [ASP] 1A:2850 [C] 4.22 1A:2887 [G] 82.73
1R:50 [HIS] 1A:2849 [G] 4.47 1A:2888 [U] 71.65
1R:50 [HIS] 1A:2850 [C] 3.51 1A:2887 [G] 71.65
1R:50 [HIS] 1A:2881 [C] 2.94 1A:2855 [G] 71.65
1R:53 [HIS] 1A:2850 [C] 2.86 1A:2887 [G] 81.32
1R:53 [HIS] 1A:2851 [C] 2.84 1A:2886 [G] 81.32
1R:57 [ARG] 1A:2879 [G] 4.97 1A:2857 [U] 40.76
1R:57 [ARG] 1A:2880 [C] 2.74 1A:2856 [G] 40.76
1R:60 [LEU] 1A:1501 [U] 3.54 58.27
1R:60 [LEU] 1A:1502 [G] 3.95 1A:2716 [C] 58.27
1R:60 [LEU] 1A:2861 [A] 4.2 1A:2876 [U] 58.27
1R:60 [LEU] 1A:2862 [G] 3.98 1A:2875 [U] 58.27
1R:61 [HIS] 1A:2860 [A] 3.18 54.01
1R:61 [HIS] 1A:2861 [A] 4.32 1A:2876 [U] 54.01
1R:61 [HIS] 1A:2879 [G] 2.95 1A:2857 [U] sugar:SC 54.01
1R:61 [HIS] 1A:2880 [C] 3.97 1A:2856 [G] 54.01
1R:63 [ARG] 1A:1501 [U] 3.1 67.85
1R:64 [ARG] 1A:1501 [U] 3.06 base:SC, base:SC 93.91
1R:64 [ARG] 1A:1502 [G] 3.32 1A:2716 [C] 93.91
1R:64 [ARG] 1A:2717 [A] 3.46 93.91
1R:64 [ARG] 1A:2718 [G] 3.39 1A:2713 [C] 93.91
1R:64 [ARG] 1A:2719 [G] 4.93 1A:2712 [C] 93.91
1R:64 [ARG] 1A:2861 [A] 3.11 1A:2876 [U] 93.91
1R:64 [ARG] 1A:2862 [G] 3.06 1A:2875 [U] 93.91
1R:65 [LEU] 1A:2880 [C] 3.95 1A:2856 [G] 1.01
1R:67 [LEU] 1A:1501 [U] 3.93 0.15
1R:68 [ARG] 1A:2719 [G] 3.44 1A:2712 [C] 40.07
1R:68 [ARG] 1A:2720 [G] 3.61 1A:2711 [C] 40.07
1R:71 [GLN] 1A:2713 [C] 4.24 1A:2718 [G] 7.05
1R:71 [GLN] 1A:2719 [G] 4.37 1A:2712 [C] 7.05
1R:71 [GLN] 1A:2720 [G] 3.22 1A:2711 [C] 7.05
1R:73 [VAL] 1A:1500 [A] 4.72 1A:1504 [A] 42.8
1R:73 [VAL] 1A:1501 [U] 3.62 42.8
1R:73 [VAL] 1A:2714 [U] 3.99 42.8
1R:77 [ARG] 1A:1500 [A] 2.85 1A:1504 [A] 35.27
1R:77 [ARG] 1A:1501 [U] 2.28 35.27
1R:90 [ARG] 1A:2890 [C] 2.74 1A:2848 [G] sugar:SC 85.15
1R:90 [ARG] 1A:2891 [C] 3.63 1A:2847 [G] 85.15
1R:91 [GLN] 1A:2849 [G] 2.92 1A:2888 [U] base:BB 34.43
1R:91 [GLN] 1A:2850 [C] 3.99 1A:2887 [G] 34.43
1R:91 [GLN] 1A:2890 [C] 3.39 1A:2848 [G] 34.43
1R:92 [GLY] 1A:2848 [G] 4.74 1A:2890 [C] 86.3
1R:92 [GLY] 1A:2849 [G] 3.29 1A:2888 [U] 86.3
1R:92 [GLY] 1A:2850 [C] 3.53 1A:2887 [G] 86.3
1R:92 [GLY] 1A:2890 [C] 2.72 1A:2848 [G] sugar:BB 86.3
1R:93 [GLY] 1A:2848 [G] 3.55 1A:2890 [C] 95.02
1R:93 [GLY] 1A:2849 [G] 3.12 1A:2888 [U] sugar:BB 95.02
1R:93 [GLY] 1A:2890 [C] 3.07 1A:2848 [G] 95.02
1R:93 [GLY] 1A:2891 [C] 3.32 1A:2847 [G] 95.02
1R:94 [TYR] 1A:2849 [G] 4.34 1A:2888 [U] 67.72
1R:94 [TYR] 1A:2850 [C] 4.39 1A:2887 [G] 67.72
1R:94 [TYR] 1A:2890 [C] 4.97 1A:2848 [G] 67.72
1R:95 [THR] 1A:2891 [C] 2.81 1A:2847 [G] sugar:BB 74.7
1R:96 [ARG] 1A:2891 [C] 3.26 1A:2847 [G] 78.37
1R:96 [ARG] 1A:2892 [A] 2.8 1A:2846 [U] 78.37
1R:97 [VAL] 1A:2891 [C] 4.34 1A:2847 [G] 69.27
1R:97 [VAL] 1A:2892 [A] 3.75 1A:2846 [U] 69.27
1R:98 [LEU] 1A:2892 [A] 3.77 1A:2846 [U] 41.8
1R:98 [LEU] 1A:2893 [A] 4.14 1A:2844 [G] 41.8
1R:99 [LYS] 1A:2826 [C] 2.74 1A:2840 [G] 66.42
1R:99 [LYS] 1A:2827 [G] 3.04 1A:2839 [C] 66.42
1R:99 [LYS] 1A:2893 [A] 4.18 1A:2844 [G] 66.42
1R:103 [ARG] 1A:2030 [C] 4.45 1A:1696 [G] 58.32
1R:104 [ARG] 1A:1324 [A] 4.53 1A:1338 [U] 94.77
1R:104 [ARG] 1A:1333 [A] 3.33 94.77
1R:104 [ARG] 1A:1696 [G] 4.57 1A:2030 [C] 94.77
1R:104 [ARG] 1A:1697 [G] 3.95 1A:2029 [C] 94.77
1R:105 [ARG] 1A:1331 [G] 3.52 32.69
1R:105 [ARG] 1A:1332 [A] 3.98 1A:1328 [U] 32.69
1R:105 [ARG] 1A:1333 [A] 3.6 32.69
1R:105 [ARG] 1A:1373 [C] 2.9 sugar:SC 32.69
1R:105 [ARG] 1A:1374 [G] 3.36 32.69
1R:105 [ARG] 1A:2031 [G] 4.19 1A:1695 [C] 32.69
1R:106 [GLY] 1A:1333 [A] 2.85 base:BB 84.99
1R:106 [GLY] 1A:1334 [U] 3.11 84.99
1R:106 [GLY] 1A:1695 [C] 4.81 1A:2031 [G] 84.99
1R:106 [GLY] 1A:2031 [G] 2.98 1A:1695 [C] base:BB 84.99
1R:106 [GLY] 1A:2032 [G] 4.39 1A:1316 [C] 84.99
1R:107 [ASP] 1A:1333 [A] 3.43 base/AA stacks 99.0
1R:107 [ASP] 1A:1334 [U] 4.92 99.0
1R:107 [ASP] 1A:1696 [G] 2.56 1A:2030 [C] base:BB, sugar:SC 99.0
1R:107 [ASP] 1A:1697 [G] 3.29 1A:2029 [C] 99.0
1R:107 [ASP] 1A:2030 [C] 4.48 1A:1696 [G] 99.0
1R:107 [ASP] 1A:2031 [G] 3.52 1A:1695 [C] 99.0
1R:108 [GLY] 1A:2031 [G] 3.84 1A:1695 [C] 51.61
1R:109 [ALA] 1A:1697 [G] 3.33 1A:2029 [C] 83.1
1R:110 [PRO] 1A:1697 [G] 4.39 1A:2029 [C] 24.94
1R:117 [VAL] 1A:2891 [C] 4.0 1A:2847 [G] 54.52

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group99 4Y4O_1R_1A 1R: 50s ribosomal protein l17, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q9Z9H5 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1R_1A 7K00_m_a 0.86 0.97 0.71 0.6 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
4Y4O_1R_1A 7OF0_O_A 0.59 0.95 1.86 0.22 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
4Y4O_1R_1A 6S0Z_L_A 0.74 0.96 1.57 0.52 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
4Y4O_1R_1A 6YSI_J_1 0.83 0.97 0.79 0.57 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
4Y4O_1R_1A 7RYG_M_A 0.83 0.96 1.65 0.57 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare