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All interfaces > All interologs > Interface groups > group99 > 6YSI_J_1

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6YSI_J
6YSI_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:1 [MET] 1:1645 [A] 3.41 94.33
J:1 [MET] 1:1988 [G] 4.76 1:1652 [C] 94.33
J:1 [MET] 1:1989 [C] 4.44 1:1651 [G] 94.33
J:1 [MET] 1:2712 [C] 3.34 1:2675 [G] 94.33
J:1 [MET] 1:2713 [U] 3.89 1:2674 [G] 94.33
J:2 [ARG] 1:1644 [G] 3.49 75.91
J:2 [ARG] 1:1645 [A] 3.39 75.91
J:2 [ARG] 1:2711 [G] 4.63 1:2676 [U] 75.91
J:2 [ARG] 1:2808 [C] 4.7 1:2816 [G] 75.91
J:2 [ARG] 1:2809 [G] 2.57 75.91
J:2 [ARG] 1:2810 [A] 3.77 1:2815 [A] 75.91
J:2 [ARG] 1:2811 [G] 3.17 base:SC, base:SC 75.91
J:3 [HIS] 1:2711 [G] 2.78 1:2676 [U] sugar:BB 84.34
J:3 [HIS] 1:2712 [C] 3.23 1:2675 [G] 84.34
J:3 [HIS] 1:2809 [G] 3.17 84.34
J:3 [HIS] 1:2810 [A] 3.02 1:2815 [A] 84.34
J:3 [HIS] 1:2811 [G] 4.14 84.34
J:4 [ARG] 1:2710 [A] 4.66 1:2677 [G] 62.46
J:4 [ARG] 1:2711 [G] 3.83 1:2676 [U] 62.46
J:4 [ARG] 1:2809 [G] 3.05 base/AA stacks 62.46
J:4 [ARG] 1:2862 [A] 3.69 1:2709 [U] 62.46
J:4 [ARG] 1:2863 [C] 3.56 1:2832 [G] 62.46
J:4 [ARG] 1:2864 [C] 3.18 1:2831 [G] 62.46
J:5 [ASN] 1:1989 [C] 4.93 1:1651 [G] 45.11
J:5 [ASN] 1:2710 [A] 3.53 1:2677 [G] 45.11
J:5 [ASN] 1:2711 [G] 4.06 1:2676 [U] 45.11
J:5 [ASN] 1:2809 [G] 4.4 45.11
J:5 [ASN] 1:2862 [A] 3.62 1:2709 [U] 45.11
J:6 [SER] 1:2679 [A] 3.85 50.15
J:6 [SER] 1:2827 [G] 4.77 1:2869 [C] 50.15
J:6 [SER] 1:2861 [G] 3.73 1:2708 [G] 50.15
J:6 [SER] 1:2862 [A] 3.06 1:2709 [U] base:BB 50.15
J:7 [GLY] 1:2679 [A] 3.51 14.87
J:8 [VAL] 1:2679 [A] 2.95 base:BB 48.05
J:9 [LYS] 1:1644 [G] 3.19 70.8
J:9 [LYS] 1:1990 [A] 3.0 1:1650 [U] 70.8
J:9 [LYS] 1:1991 [G] 2.82 1:1649 [C] 70.8
J:9 [LYS] 1:2679 [A] 4.67 70.8
J:10 [LEU] 1:1642 [G] 3.84 1:1995 [C] 69.23
J:10 [LEU] 1:1643 [A] 3.98 69.23
J:10 [LEU] 1:1644 [G] 3.17 69.23
J:11 [GLY] 1:1644 [G] 3.11 base:BB 62.6
J:11 [GLY] 1:1991 [G] 4.89 1:1649 [C] 62.6
J:11 [GLY] 1:1992 [A] 3.13 1:1648 [U] 62.6
J:12 [ARG] 1:1264 [A] 3.1 1:1282 [U] sugar:SC 80.23
J:12 [ARG] 1:1265 [A] 3.81 1:1281 [U] 80.23
J:12 [ARG] 1:1641 [A] 4.43 1:1996 [U] 80.23
J:12 [ARG] 1:1642 [G] 4.9 1:1995 [C] 80.23
J:12 [ARG] 1:1991 [G] 3.51 1:1649 [C] 80.23
J:12 [ARG] 1:1992 [A] 4.4 1:1648 [U] 80.23
J:13 [THR] 1:1991 [G] 4.14 1:1649 [C] 23.03
J:14 [SER] 1:2678 [U] 3.43 sugar:SC 58.99
J:14 [SER] 1:2679 [A] 3.68 58.99
J:15 [SER] 1:1263 [A] 4.32 46.67
J:15 [SER] 1:2699 [C] 3.14 1:2686 [G] 46.67
J:16 [HIS] 1:1263 [A] 3.09 base/AA stacks 57.42
J:16 [HIS] 1:1264 [A] 2.85 1:1282 [U] sugar:SC 57.42
J:17 [ARG] 1:1990 [A] 4.87 1:1650 [U] 89.55
J:17 [ARG] 1:1991 [G] 3.34 1:1649 [C] 89.55
J:17 [ARG] 1:2679 [A] 3.37 base/AA stacks 89.55
J:18 [LYS] 1:2697 [C] 3.86 1:2688 [G] 51.05
J:18 [LYS] 1:2698 [G] 2.98 1:2687 [U] 51.05
J:19 [ALA] 1:1263 [A] 4.03 81.55
J:19 [ALA] 1:1283 [C] 3.69 1:1636 [G] 81.55
J:20 [MET] 1:1264 [A] 3.96 1:1282 [U] 76.85
J:20 [MET] 1:1265 [A] 3.91 1:1281 [U] 76.85
J:23 [ASN] 1:1264 [A] 4.39 1:1282 [U] 79.09
J:23 [ASN] 1:1265 [A] 4.56 1:1281 [U] 79.09
J:23 [ASN] 1:1282 [U] 2.56 1:1264 [A] base:SC, sugar:SC 79.09
J:23 [ASN] 1:1283 [C] 3.23 1:1636 [G] sugar:SC 79.09
J:24 [LEU] 1:1265 [A] 3.6 1:1281 [U] 86.81
J:24 [LEU] 1:1266 [C] 3.96 1:1280 [G] 86.81
J:26 [ASN] 1:1282 [U] 4.64 1:1264 [A] 63.04
J:27 [SER] 1:1266 [C] 3.27 1:1280 [G] sugar:SC 75.82
J:31 [HIS] 1:1266 [C] 3.83 1:1280 [G] 66.58
J:31 [HIS] 1:1267 [G] 3.47 1:1279 [C] 66.58
J:33 [LEU] 1:1267 [G] 4.25 1:1279 [C] 50.86
J:34 [ILE] 1:1266 [C] 3.57 1:1280 [G] 85.17
J:34 [ILE] 1:1267 [G] 3.45 1:1279 [C] 85.17
J:35 [LYS] 1:1266 [C] 3.49 1:1280 [G] 42.54
J:35 [LYS] 1:1267 [G] 2.62 1:1279 [C] 42.54
J:36 [THR] 1:1265 [A] 4.43 1:1281 [U] 99.0
J:36 [THR] 1:1266 [C] 3.03 1:1280 [G] 99.0
J:37 [THR] 1:1266 [C] 4.45 1:1280 [G] 99.0
J:37 [THR] 1:1641 [A] 3.88 1:1996 [U] 99.0
J:37 [THR] 1:1642 [G] 2.65 1:1995 [C] 99.0
J:39 [PRO] 1:1642 [G] 3.16 1:1995 [C] 76.18
J:39 [PRO] 1:1643 [A] 4.17 76.18
J:40 [LYS] 1:1265 [A] 4.51 1:1281 [U] 87.86
J:40 [LYS] 1:1641 [A] 4.15 1:1996 [U] 87.86
J:40 [LYS] 1:1642 [G] 2.96 1:1995 [C] 87.86
J:42 [LYS] 1:2806 [U] 2.83 1:2818 [A] 87.72
J:42 [LYS] 1:2807 [U] 2.69 1:2817 [G] 87.72
J:45 [ARG] 1:2807 [U] 3.45 1:2817 [G] 62.32
J:45 [ARG] 1:2826 [A] 4.68 1:2870 [U] 62.32
J:45 [ARG] 1:2827 [G] 3.64 1:2869 [C] 62.32
J:45 [ARG] 1:2828 [G] 4.63 1:2867 [U] 62.32
J:45 [ARG] 1:2870 [U] 4.88 1:2826 [A] 62.32
J:46 [ARG] 1:2827 [G] 3.38 1:2869 [C] 55.28
J:46 [ARG] 1:2828 [G] 3.27 1:2867 [U] 55.28
J:46 [ARG] 1:2861 [G] 3.83 1:2708 [G] sugar:SC 55.28
J:46 [ARG] 1:2862 [A] 4.26 1:2709 [U] 55.28
J:49 [GLU] 1:2827 [G] 4.26 1:2869 [C] 82.56
J:49 [GLU] 1:2828 [G] 3.07 1:2867 [U] 82.56
J:49 [GLU] 1:2829 [U] 4.09 1:2866 [A] 82.56
J:50 [PRO] 1:2828 [G] 4.32 1:2867 [U] 73.26
J:50 [PRO] 1:2829 [U] 3.49 1:2866 [A] 73.26
J:53 [THR] 1:2828 [G] 4.4 1:2867 [U] 82.45
J:53 [THR] 1:2829 [U] 2.81 1:2866 [A] 82.45
J:53 [THR] 1:2830 [U] 3.75 1:2865 [A] 82.45
J:60 [VAL] 1:1442 [U] 3.66 58.0
J:60 [VAL] 1:1443 [G] 4.33 1:2693 [C] 58.0
J:60 [VAL] 1:2840 [A] 4.81 1:2855 [G] 58.0
J:61 [ALA] 1:2839 [A] 3.97 53.86
J:61 [ALA] 1:2840 [A] 4.47 1:2855 [G] 53.86
J:62 [ASN] 1:2859 [C] 4.65 1:2835 [G] 64.32
J:63 [ARG] 1:1441 [U] 3.21 sugar:SC 69.89
J:63 [ARG] 1:1442 [U] 3.48 69.89
J:64 [ARG] 1:1442 [U] 2.98 base:SC 87.89
J:64 [ARG] 1:1443 [G] 3.47 1:2693 [C] 87.89
J:64 [ARG] 1:2694 [A] 3.97 87.89
J:64 [ARG] 1:2695 [G] 3.38 1:2690 [C] 87.89
J:64 [ARG] 1:2840 [A] 3.1 1:2855 [G] 87.89
J:64 [ARG] 1:2841 [G] 3.21 1:2854 [U] 87.89
J:65 [LEU] 1:2859 [C] 3.87 1:2835 [G] 28.07
J:67 [PHE] 1:1442 [U] 3.56 0.59
J:67 [PHE] 1:2690 [C] 3.52 1:2695 [G] 0.59
J:67 [PHE] 1:2695 [G] 4.34 1:2690 [C] 0.59
J:68 [ALA] 1:2696 [U] 3.51 1:2689 [A] 48.55
J:68 [ALA] 1:2697 [C] 3.66 1:2688 [G] 48.55
J:69 [ARG] 1:2681 [C] 4.86 1:2706 [G] 0.0
J:69 [ARG] 1:2859 [C] 3.14 1:2835 [G] 0.0
J:69 [ARG] 1:2860 [U] 3.16 1:2834 [U] 0.0
J:71 [ARG] 1:2689 [A] 3.61 1:2696 [U] 14.75
J:71 [ARG] 1:2690 [C] 3.52 1:2695 [G] 14.75
J:71 [ARG] 1:2695 [G] 4.21 1:2690 [C] 14.75
J:71 [ARG] 1:2696 [U] 2.96 1:2689 [A] base:SC 14.75
J:71 [ARG] 1:2697 [C] 3.52 1:2688 [G] base/AA stacks 14.75
J:73 [ALA] 1:1441 [U] 3.69 44.47
J:74 [ALA] 1:1441 [U] 3.43 40.68
J:76 [VAL] 1:1442 [U] 4.51 70.36
J:77 [GLY] 1:1441 [U] 3.25 42.35
J:78 [LYS] 1:1441 [U] 4.97 77.83
J:90 [ARG] 1:2869 [C] 2.9 1:2827 [G] sugar:SC 85.38
J:90 [ARG] 1:2870 [U] 4.24 1:2826 [A] 85.38
J:91 [ASN] 1:2828 [G] 3.06 1:2867 [U] base:BB 53.39
J:91 [ASN] 1:2829 [U] 3.82 1:2866 [A] 53.39
J:91 [ASN] 1:2869 [C] 3.56 1:2827 [G] 53.39
J:92 [GLY] 1:2827 [G] 4.88 1:2869 [C] 84.28
J:92 [GLY] 1:2828 [G] 3.11 1:2867 [U] 84.28
J:92 [GLY] 1:2829 [U] 3.49 1:2866 [A] 84.28
J:92 [GLY] 1:2869 [C] 3.1 1:2827 [G] sugar:BB 84.28
J:93 [GLY] 1:2827 [G] 3.85 1:2869 [C] 93.21
J:93 [GLY] 1:2828 [G] 3.29 1:2867 [U] sugar:BB 93.21
J:93 [GLY] 1:2869 [C] 3.14 1:2827 [G] sugar:BB 93.21
J:93 [GLY] 1:2870 [U] 3.65 1:2826 [A] 93.21
J:94 [TYR] 1:2828 [G] 4.26 1:2867 [U] 71.44
J:94 [TYR] 1:2829 [U] 3.96 1:2866 [A] 71.44
J:94 [TYR] 1:2869 [C] 5.0 1:2827 [G] 71.44
J:95 [LEU] 1:2870 [U] 3.05 1:2826 [A] sugar:BB 83.6
J:96 [ARG] 1:2870 [U] 3.48 1:2826 [A] 85.77
J:96 [ARG] 1:2871 [A] 2.67 1:2825 [U] 85.77
J:97 [VAL] 1:2870 [U] 4.3 1:2826 [A] 72.01
J:97 [VAL] 1:2871 [A] 3.94 1:2825 [U] 72.01
J:98 [LEU] 1:2871 [A] 4.31 1:2825 [U] 39.9
J:99 [LYS] 1:2805 [G] 3.17 1:2819 [C] 69.51
J:99 [LYS] 1:2806 [U] 2.81 1:2818 [A] 69.51
J:99 [LYS] 1:2871 [A] 4.5 1:2825 [U] 69.51
J:103 [ARG] 1:1275 [A] 3.15 95.11
J:103 [ARG] 1:1640 [G] 3.78 1:1997 [C] 95.11
J:103 [ARG] 1:1641 [A] 3.52 1:1996 [U] 95.11
J:104 [ALA] 1:1273 [A] 4.25 29.5
J:104 [ALA] 1:1274 [A] 3.98 1:1270 [U] 29.5
J:104 [ALA] 1:1275 [A] 3.74 29.5
J:105 [GLY] 1:1275 [A] 2.83 base:BB 84.46
J:105 [GLY] 1:1276 [A] 3.81 1:1314 [U] base:BB 84.46
J:105 [GLY] 1:1314 [U] 4.94 1:1276 [A] 84.46
J:106 [ASP] 1:1275 [A] 3.64 base/AA stacks 97.99
J:106 [ASP] 1:1640 [G] 2.54 1:1997 [C] base:BB, base:SC, sugar:SC, sugar:SC 97.99
J:106 [ASP] 1:1641 [A] 2.98 1:1996 [U] 97.99
J:106 [ASP] 1:1997 [C] 4.91 1:1640 [G] 97.99
J:106 [ASP] 1:1998 [A] 3.78 1:1639 [U] 97.99
J:107 [ALA] 1:1997 [C] 4.92 1:1640 [G] 62.27
J:107 [ALA] 1:1998 [A] 3.37 1:1639 [U] 62.27
J:108 [ALA] 1:1641 [A] 3.2 1:1996 [U] 88.75
J:109 [PRO] 1:1641 [A] 4.35 1:1996 [U] 34.82
J:116 [VAL] 1:2870 [U] 4.1 1:2826 [A] 63.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group99 6YSI_J_1 J: 50s ribosomal protein l17, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) 1: 23s ribosomal RNA, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) D0CD23 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6YSI_J_1 7OF0_O_A 0.63 0.92 1.85 0.23 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
6YSI_J_1 7RYG_M_A 0.99 0.98 1.27 1.0 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
6YSI_J_1 7K00_m_a 0.92 1.0 0.44 0.75 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
6S0Z_L_A 6YSI_J_1 0.75 0.98 1.41 0.52 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare
4Y4O_1R_1A 6YSI_J_1 0.83 0.97 0.79 0.57 Prokaryotic ribosomal protein L17 Bacterial large subunit ribosomal RNA compare