Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_H
|
7RYG_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| H:11 [ASN] | A:2091 [A] | 4.33 | A:2190 [U] | 61.41 | ||
| H:11 [ASN] | A:2092 [C] | 4.87 | A:2189 [G] | 61.41 | ||
| H:22 [LYS] | A:2089 [G] | 3.78 | A:2192 [C] | 72.05 | ||
| H:22 [LYS] | A:2090 [A] | 3.46 | A:2191 [U] | 72.05 | ||
| H:23 [ALA] | A:2087 [C] | 4.69 | A:2224 [G] | 48.18 | ||
| H:23 [ALA] | A:2089 [G] | 3.76 | A:2192 [C] | 48.18 | ||
| H:24 [GLY] | A:2088 [U] | 4.08 | A:2223 [C] | 98.15 | ||
| H:24 [GLY] | A:2089 [G] | 3.17 | A:2192 [C] | 98.15 | ||
| H:24 [GLY] | A:2194 [A] | 4.53 | 98.15 | |||
| H:25 [TYR] | A:2089 [G] | 3.19 | A:2192 [C] | 84.43 | ||
| H:25 [TYR] | A:2090 [A] | 3.86 | A:2191 [U] | 84.43 | ||
| H:25 [TYR] | A:2194 [A] | 3.7 | 84.43 | |||
| H:27 [ARG] | A:2087 [C] | 3.94 | A:2224 [G] | 88.14 | ||
| H:27 [ARG] | A:2088 [U] | 3.01 | A:2223 [C] | 88.14 | ||
| H:27 [ARG] | A:2089 [G] | 4.24 | A:2192 [C] | 88.14 | ||
| H:28 [ASN] | A:2088 [U] | 3.19 | A:2223 [C] | 99.0 | ||
| H:28 [ASN] | A:2194 [A] | 4.11 | 99.0 | |||
| H:28 [ASN] | A:2195 [A] | 3.32 | A:2220 [G] | 99.0 | ||
| H:29 [PHE] | A:2194 [A] | 3.6 | base/AA stacks | 67.79 | ||
| H:33 [GLN] | A:2194 [A] | 4.24 | 52.08 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group44 | 7RYG_H_A | H: 50s ribosomal protein l9, Acinetobacter baumannii (strain ab0057) (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | B7IBC3 | L9 N-domain-like | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 7K00_h_a | 7RYG_H_A | 0.97 | 0.98 | 2.02 | 1.0 | L9 N-domain-like | Bacterial large subunit ribosomal RNA | compare |
| 4Y4O_1I_1A | 7RYG_H_A | 0.97 | 0.96 | 3.59 | 0.5 | L9 N-domain-like | Bacterial large subunit ribosomal RNA | compare |