Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
| 6FQ3_A
|
6FQ3_B
|
6FQL_A
|
6FQL_B
|
Conserved?
|
|---|---|---|---|---|
| A:754 [GLN] | B:9 [A] | A:754 [GLN] | B:9 [A] | ✔ |
| A:676 [ARG] | B:7 [C] | A:676 [ARG] | B:7 [U] | ✔ |
| A:582 [SER] | B:6 [C] | A:582 [SER] | B:6 [U] | ✔ |
| A:582 [SER] | B:8 [A] | A:582 [SER] | B:8 [A] | ✔ |
| A:563 [CYS] | B:6 [C] | A:563 [CYS] | B:6 [U] | ✔ |
| A:770 [ARG] | B:10 [C] | A:770 [ARG] | B:10 [U] | ✔ |
| A:752 [ARG] | B:9 [A] | A:752 [ARG] | B:9 [A] | ✔ |
| A:752 [ARG] | B:10 [C] | A:752 [ARG] | B:10 [U] | ✔ |
| A:629 [ASP] | B:7 [C] | A:629 [ASP] | B:7 [U] | ✔ |
| A:555 [GLU] | B:6 [C] | A:555 [GLU] | B:6 [U] | ✔ |
| A:660 [TRP] | B:8 [A] | A:660 [TRP] | B:8 [A] | ✔ |
| A:660 [TRP] | B:9 [A] | A:660 [TRP] | B:9 [A] | ✔ |
| A:722 [PHE] | B:9 [A] | A:722 [PHE] | B:9 [A] | ✔ |
| A:722 [PHE] | B:10 [C] | A:722 [PHE] | B:10 [U] | ✔ |
| A:658 [TYR] | B:7 [C] | A:658 [TYR] | B:7 [U] | ✔ |
| A:628 [LYS] | B:7 [C] | A:628 [LYS] | B:7 [U] | ✔ |
| A:628 [LYS] | B:8 [A] | A:628 [LYS] | B:8 [A] | ✔ |
| A:564 [ARG] | B:6 [C] | A:564 [ARG] | B:6 [U] | ✔ |
| A:564 [ARG] | B:8 [A] | A:564 [ARG] | B:8 [A] | ✔ |
| A:611 [ARG] | B:6 [C] | A:611 [ARG] | B:6 [U] | ✔ |
| A:611 [ARG] | B:7 [C] | A:611 [ARG] | B:7 [U] | ✔ |
| A:611 [ARG] | B:8 [A] | A:611 [ARG] | B:8 [A] | ✔ |
| A:707 [ARG] | B:8 [A] | A:707 [ARG] | B:8 [A] | ✔ |
| A:707 [ARG] | B:9 [A] | A:707 [ARG] | B:9 [A] | ✔ |
| A:581 [ARG] | B:8 [A] | A:581 [ARG] | B:8 [A] | ✔ |
| A:770 [ARG] | B:9 [A] | A:770 [ARG] | B:9 [A] | ❌ 6FQL_A_B |
| A:723 [ASN] | B:9 [A] | A:723 [ASN] | B:9 [A] | ❌ 6FQ3_A:723 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6-bladed | 1.0 | 0.1 | 0.40 | 1.0 | 0.84 | 1.0 | 1.0 | 0.99 | 1.00 | 0.92 | 0.50 |
Other pairs involving 6FQ3_A_B or 6FQL_A_B
Total number of entries: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4ZLR_A_C | 6FQL_A_B | 0.19 | 0.84 | 2.36 | 0.0 | 6-bladed | compare | |
| 4ZLR_A_C | 6FQ3_A_B | 0.17 | 0.84 | 2.23 | 0.0 | 6-bladed | compare | |
| 6FQ3_A_B | 6FQL_A_B | 0.99 | 1.0 | 0.1 | 0.4 | 6-bladed | compare |